test_locus_http
Locus14789.htm
ADDITIONAL_LINKS:
                key is UniGene
                    Mm.35708
url = http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Mm&CID=35708


----------------------------------------------
----------------------------------------------
EXTERNAL_ANNOTATION:
        Not Available
FUNCTION:
        Not Available
GENBANK:
                AC002397
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=3287367&db=Nucleotide&dopt=GenBank


                g
                AAC36012
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=3287370&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=3287370&all=1


----------------------------------------------
                BC003726
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=13277629&db=Nucleotide&dopt=GenBank


                m
                AAH03726
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=13277630&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=13277630&all=1


----------------------------------------------
                BC016431
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=16741169&db=Nucleotide&dopt=GenBank


                m
                AAH16431
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=16741170&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=16741170&all=1


----------------------------------------------
----------------------------------------------
LOCUS:
        Not Available
MAP:
        key is Chromosome
                6
                mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?org=mouse&chr=6&query=Grcb&cmd=focus&fill=40&size=40


----------------------------------------------
        key is Cytogenetic
                6
                RefSeq
----------------------------------------------
        key is Genetic
                6 60.19 cM
                MGD
url = http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI:1315208


----------------------------------------------
NOMENCLATURE:
        key is Grcb
                 gene rich cluster, B gene
----------------------------------------------
        key is LocusID
                14789
----------------------------------------------
OVERVIEW:
        key is Alternate Symbols
                B
----------------------------------------------
        key is Locus Type
                gene with protein product, function known or inferred
----------------------------------------------
        key is Product
                gene rich cluster, B gene
----------------------------------------------
REFSEQ:
            key is PROVISIONAL
                key is GenBank Source
                        AC002397
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=AC002397&dopt=DocSum&dispmax=1000


----------------------------------------------
                key is Protein
                        NP_038562
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7305105&db=Protein&dopt=GenPept
gene rich cluster, B gene

                        BL
url = /cgi-bin/Entrez/blink?pid=7305105&all=1


----------------------------------------------
                key is mRNA
                        NM_013534
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7305104&db=Nucleotide&dopt=GenBank


----------------------------------------------
            key is NCBI Genome Annotation
                key is 1.
----------------------------------------------
                key is Annotated transcripts/proteins for this locus
----------------------------------------------
                key is Evidence
                        supported by alignment with both mRNA and ESTs (6)
----------------------------------------------
                key is Genomic Contig
                        NT_002572
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=NT_002572.2&db=Nucleotide&dopt=GenBank


                        gb
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NT_002572.2&from=39181&to=55768&strand=1&text=on&view=genbank


                        sv
url = /entrez/viewer.cgi?val=NT_002572.2&_gene=Grcb&view=graph


                        mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=mouse&MAPS=cntg,stsnw-r,rh,mgi,besnw,locnw,loc&chr=6&gnl=NT_002572.2&verbose=on&query=LOCUS(14789)


                        ev
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/evv.cgi?org=mouse&contig=NT_002572.2&gene=Grcb&lid=14789


                        mm
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/modelmaker.cgi?org=mouse&cntg=cntg&contig=NT_002572.2&gene=Grcb&lid=14789


----------------------------------------------
                key is Protein
                        NP_038562
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7305105&db=Protein&dopt=GenPept


                        BL
url = /cgi-bin/Entrez/blink?pid=7305105&all=1


----------------------------------------------
                key is mRNA
                        NM_013534
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7305104&db=Nucleotide&dopt=GenBank


----------------------------------------------
            key is NCBI Genome Annotation
                key is 2.
----------------------------------------------
                key is Annotated transcripts/proteins for this locus
----------------------------------------------
                key is Evidence
                        supported by alignment with mRNA
----------------------------------------------
                key is Genomic Contig
                        NW_000265
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=NW_000265.1&db=Nucleotide&dopt=GenBank


                        gb
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NW_000265.1&from=258786&to=275681&strand=2&text=on&view=genbank


                        sv
url = /entrez/viewer.cgi?val=NW_000265.1&_gene=Grcb&view=graph


                        mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=mouse&MAPS=cntgnw,stsnw-r,rh,mgi,besnw,locnw&chr=6&gnl=NW_000265.1&verbose=on&query=LOCUS(14789)


                        ev
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/evv.cgi?org=mouse&contig=NW_000265.1&gene=Grcb&lid=14789


                        mm
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/modelmaker.cgi?org=mouse&cntg=cntgnw&contig=NW_000265.1&gene=Grcb&lid=14789


----------------------------------------------
                key is Protein
                        NP_038562
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7305105&db=Protein&dopt=GenPept


                        BL
url = /cgi-bin/Entrez/blink?pid=7305105&all=1


----------------------------------------------
                key is Strain
                        C57BL/6J
----------------------------------------------
                key is mRNA
                        NM_013534
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7305104&db=Nucleotide&dopt=GenBank


----------------------------------------------
----------------------------------------------
RELATIONSHIPS:
        key is Human Homology Maps
                    NCBI vs. MGD
                    12q13
                    HSU47926
url = ./LocRpt.cgi?l=10536


                    Mm
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=10090&chr=6&symbol=Grcb


                    Hs
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=9606&chr=12&symbol=HSU47926


----------------------------------------------
                    UCSC vs. MGD
                    12q13
                    HSU47926
url = ./LocRpt.cgi?l=10536


                    Mm
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=10090&chr=6&symbol=Grcb


                    Hs
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=9606&chr=12&symbol=HSU47926


----------------------------------------------
----------------------------------------------




Locus16590.htm
ADDITIONAL_LINKS:
                key is UniGene
                    Mm.4394
url = http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Mm&CID=4394


----------------------------------------------
----------------------------------------------
EXTERNAL_ANNOTATION:
        Not Available
FUNCTION:
        key is GeneRIF
                     Gene References into Function:
----------------------------------------------
                11964302
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=11964302


                    Critical roles of c-Kit tyrosine residues 567 and 719 in stem cell factor-induced chemotaxis
----------------------------------------------
                Gene Ontology
url = http://www.geneontology.org/


----------------------------------------------
        key is TM
----------------------------------------------
                    membrane
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0016020


                    IEA
                    MGD
----------------------------------------------
                ATP binding
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005524


                    IEA
                    MGD
----------------------------------------------
                transferase
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0016740


                    IEA
                    MGD
----------------------------------------------
                intracellular
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005622


                    IEA
                    MGD
----------------------------------------------
                protein kinase
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0004672


                    IEA
                    MGD
----------------------------------------------
                protein tyrosine kinase
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0004713


                    IEA
                    MGD
----------------------------------------------
                regulation of cell cycle
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0000074


                    IEA
                    MGD
----------------------------------------------
                integral membrane protein
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0016021


                    IEA
                    MGD
----------------------------------------------
                cell growth and/or maintenance
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0008151


                    IEA
                    MGD
----------------------------------------------
                protein amino acid phosphorylation
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0006468


                    IEA
                    MGD
----------------------------------------------
                transmembrane receptor protein tyrosine kinase
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0004714


                    IEA
                    MGD
----------------------------------------------
                transmembrane receptor protein tyrosine kinase signaling pathway
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0007169


                    IEA
                    MGD
----------------------------------------------
----------------------------------------------
GENBANK:
                L11358
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=293325&db=Nucleotide&dopt=GenBank


                g
                AAA37420
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=293326&db=Protein&dopt=GenPept


                BALB/c
                BL
url = /cgi-bin/Entrez/blink?pid=293326&all=1


----------------------------------------------
                X65998
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50433&db=Nucleotide&dopt=GenBank


                g
                CAA46799
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50434&db=Protein&dopt=GenPept


                ICR
                BL
url = /cgi-bin/Entrez/blink?pid=50434&all=1


----------------------------------------------
                CAA46800
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50435&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=50435&all=1


----------------------------------------------
                AW741410
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=7653185&db=Nucleotide&dopt=GenBank


                m
----------------------------------------------
                X65997
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50431&db=Nucleotide&dopt=GenBank


                m
                CAA46798
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50432&db=Protein&dopt=GenPept


                ICR
                BL
url = /cgi-bin/Entrez/blink?pid=50432&all=1


----------------------------------------------
                Y00864
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50423&db=Nucleotide&dopt=GenBank


                m
                CAA68772
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=50424&db=Protein&dopt=GenPept


                BALB/c
                BL
url = /cgi-bin/Entrez/blink?pid=50424&all=1


----------------------------------------------
----------------------------------------------
LOCUS:
        Not Available
MAP:
        key is Chromosome
                5
                mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?org=mouse&chr=5&query=Kit&cmd=focus&fill=40&size=40


----------------------------------------------
        key is Cytogenetic
                5
                RefSeq
----------------------------------------------
        key is Genetic
                5 42.0 cM
                MGD
url = http://www.informatics.jax.org/searches/accession_report.cgi?id=MGI:96677


----------------------------------------------
        key is Markers
                    Chr. 5
                    3714
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=179184


----------------------------------------------
                    Chr. 5
                    Y00864
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=179184


----------------------------------------------
----------------------------------------------
NOMENCLATURE:
        key is Kit
                 kit oncogene
----------------------------------------------
        key is LocusID
                16590
----------------------------------------------
OVERVIEW:
        key is Alias
                dominant spotting
                spotted sterile male
                Steel Factor Receptor
                Dominant white spotting
                c-kit proto-oncogene protein
----------------------------------------------
        key is Alternate Symbols
                W, Bs, Fdc, Ssm, CD117, c-KIT, belly-spot
----------------------------------------------
        key is Locus Type
                gene with protein product, function known or inferred
----------------------------------------------
        key is Product
                c-kit
----------------------------------------------
        key is RefSeqSummary
                The c-Kit proto-oncogene is the cellular homolog of the transforming gene of a feline retrovirus (v-Kit). The c-kit protein includes characteristics of a protein kinase transmembrane receptor.
----------------------------------------------
REFSEQ:
            key is REVIEWED
                key is Domains
                            Immunoglobulin
url = /Structure/cdd/cddsrv.cgi?uid=smart00409
score:125

----------------------------------------------
                            Immunoglobulin domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00047
score:94

----------------------------------------------
                            Protein kinase domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00069
score:198

----------------------------------------------
                            Immunoglobulin C-2 Type
url = /Structure/cdd/cddsrv.cgi?uid=smart00408
score:83

----------------------------------------------
                            Tyrosine kinase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00219
score:610

----------------------------------------------
                            Serine/Threonine protein kinases, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00220
score:159

----------------------------------------------
----------------------------------------------
                key is GenBank Source
                        AW741410,Y00864
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=AW741410,Y00864&dopt=DocSum&dispmax=1000


----------------------------------------------
                key is Protein
                        NP_066922
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=10863917&db=Protein&dopt=GenPept
c-kit

                        BL
url = /cgi-bin/Entrez/blink?pid=10863917&all=1


----------------------------------------------
                key is Strain
                        BALB/c
----------------------------------------------
                key is mRNA
                        NM_021099
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=10947120&db=Nucleotide&dopt=GenBank


----------------------------------------------
            key is NCBI Genome Annotation
                key is Annotated transcripts/proteins for this locus
----------------------------------------------
                key is Domains
                            Immunoglobulin
url = /Structure/cdd/cddsrv.cgi?uid=smart00409
score:125

----------------------------------------------
                            Immunoglobulin domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00047
score:94

----------------------------------------------
                            Protein kinase domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00069
score:402

----------------------------------------------
                            Immunoglobulin C-2 Type
url = /Structure/cdd/cddsrv.cgi?uid=smart00408
score:83

----------------------------------------------
                            Tyrosine kinase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00219
score:616

----------------------------------------------
                            Serine/Threonine protein kinases, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00220
score:308

----------------------------------------------
----------------------------------------------
                key is Evidence
                        supported by alignment with both mRNA and ESTs (51)
----------------------------------------------
                key is Genomic Contig
                        NW_000230
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=NW_000230.1&db=Nucleotide&dopt=GenBank


                        gb
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NW_000230.1&from=1594776&to=1676260&strand=1&text=on&view=genbank


                        sv
url = /entrez/viewer.cgi?val=NW_000230.1&_gene=Kit&view=graph


                        mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=mouse&MAPS=cntgnw,stsnw-r,rh,mgi,besnw,locnw&chr=5&gnl=NW_000230.1&verbose=on&query=LOCUS(16590)


                        ev
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/evv.cgi?org=mouse&contig=NW_000230.1&gene=Kit&lid=16590


                        mm
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/modelmaker.cgi?org=mouse&cntg=cntgnw&contig=NW_000230.1&gene=Kit&lid=16590


----------------------------------------------
                key is Model Protein
                        XP_132123
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=20832868&db=Protein&dopt=GenPept


                        BL
url = /cgi-bin/Entrez/blink?pid=20832868&all=1


----------------------------------------------
                key is Model mRNA
                        XM_132123
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=20832867&db=Nucleotide&dopt=GenBank


----------------------------------------------
                key is Strain
                        C57BL/6J
----------------------------------------------
----------------------------------------------
RELATIONSHIPS:
        key is Human Homology Maps
                    NCBI vs. MGD
                    4q11-q12
                    KIT
url = ./LocRpt.cgi?l=3815


                    Mm
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=10090&chr=5&symbol=Kit


                    Hs
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=9606&chr=4&symbol=KIT


----------------------------------------------
                    UCSC vs. MGD
                    4q11-q12
                    KIT
url = ./LocRpt.cgi?l=3815


                    Mm
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=10090&chr=5&symbol=Kit


                    Hs
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=9606&chr=4&symbol=KIT


----------------------------------------------
                    NCBI vs. EST-based RH Map
                    4q11-q12
                    X06182
url = ./LocRpt.cgi?l=16590


                    Mm
url = /Homology/view.cgi?map=ncbi_est&tax_id=10090&chr=5&symbol=Y00864


                    Hs
url = /Homology/view.cgi?map=ncbi_est&tax_id=9606&chr=4&symbol=X06182


----------------------------------------------
                    UCSC vs. EST-based RH Map
                    4q11-q12
                    X06182
url = ./LocRpt.cgi?l=16590


                    Mm
url = /Homology/view.cgi?map=ucsc_est&tax_id=10090&chr=5&symbol=Y00864


                    Hs
url = /Homology/view.cgi?map=ucsc_est&tax_id=9606&chr=4&symbol=X06182


----------------------------------------------
                    UCSC vs. Hudson et al.
                    4q11-q12
                    AW263947
url = ./LocRpt.cgi?l=16590


                    Mm
url = /Homology/view.cgi?map=natgen_paper&tax_id=10090&chr=5&symbol=Y00864


                    Hs
url = /Homology/view.cgi?map=natgen_paper&tax_id=9606&chr=4&symbol=AW263947


----------------------------------------------
----------------------------------------------




Locus2523.htm
ADDITIONAL_LINKS:
                key is OMIM
                    211100
url = http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=211100


----------------------------------------------
                key is UniGene
                    Hs.69747
url = http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Hs&CID=69747


----------------------------------------------
                GeneCards
url = http://bioinformatics.weizmann.ac.il/cards-bin/carddisp?FUT1


----------------------------------------------
                KEGG pathway: Blood group glycolipid biosynthesis - lact series
url = http://www.genome.ad.jp/dbget-bin/get_pathway?org_name=hsa&mapno=00601


----------------------------------------------
                KEGG pathway: Blood group glycolipid biosynthesis - neolact series
url = http://www.genome.ad.jp/dbget-bin/get_pathway?org_name=hsa&mapno=00602


----------------------------------------------
                Blood Group Antigen Gene Mutation Database
url = http://www.bioc.aecom.yu.edu/bgmut/hh.htm


----------------------------------------------
----------------------------------------------
EXTERNAL_ANNOTATION:
        Not Available
FUNCTION:
        key is EC Number
                    2.4.1.69
url = http://www.expasy.ch/cgi-bin/nicezyme.pl?2.4.1.69


----------------------------------------------
                Gene Ontology
url = http://www.geneontology.org/


----------------------------------------------
        key is Other Ontologies
----------------------------------------------
                    Golgi
                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                    Transferase
                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                    Integral membrane
                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                    Unspecified membrane
                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
----------------------------------------------
        key is TM
----------------------------------------------
                    Golgi apparatus
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005794


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                membrane fraction
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005624


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                fucosyltransferase
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0008417


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                blood group antigen
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005555


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                carbohydrate metabolism
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005975


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
                integral plasma membrane protein
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005887


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=2118655


----------------------------------------------
----------------------------------------------
GENBANK:
                AB004859
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217920&db=Nucleotide&dopt=GenBank


                g
                BAA20556
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217921&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=2217921&all=1


----------------------------------------------
                AB004860
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217922&db=Nucleotide&dopt=GenBank


                g
                BAA20557
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217923&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=2217923&all=1


----------------------------------------------
                AB004861
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217924&db=Nucleotide&dopt=GenBank


                g
                BAA20558
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217925&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=2217925&all=1


----------------------------------------------
                AB004862
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217926&db=Nucleotide&dopt=GenBank


                g
                BAA20559
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217927&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=2217927&all=1


----------------------------------------------
                AB004863
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217928&db=Nucleotide&dopt=GenBank


                g
                BAA20560
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2217929&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=2217929&all=1


----------------------------------------------
                Z69587
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=1616598&db=Nucleotide&dopt=GenBank


                g
                CAA93435
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=1648868&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=1648868&all=1


----------------------------------------------
                M35531
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=183887&db=Nucleotide&dopt=GenBank


                m
                AAA52639
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=306830&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=306830&all=1


----------------------------------------------
----------------------------------------------
LOCUS:
        Not Available
MAP:
        key is Chromosome
                19
                mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&chr=19&ovr=ideogr&maps=scan-r,est,loc&VERBOSE=ON&cmd=focus&fill=40&size=40&query=FUT1


----------------------------------------------
        key is Cytogenetic
                19q13.3
                HUGO
url = http://gdbwww.gdb.org/gdb-bin/genera/accno?GDB:120618


----------------------------------------------
        key is Markers
                    Chr. 19
                    G15901
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=37175


                    mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&CHR=19&MAPS=rh,wiyac,g3,gb4,shgcg3,marsh,thon,loc,comp,sts&sts=37175&ZOOM=10


----------------------------------------------
                    Chr. -
                    D19S596
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=42586


                    D19S596
----------------------------------------------
                    Chr. 19
                    STS-M35531
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=53731


                    mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&CHR=19&MAPS=rh,wiyac,g3,gb4,shgcg3,marsh,thon,loc,comp,sts&sts=53731&ZOOM=10


----------------------------------------------
                    Chr. 19
                    RH78937
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=64899


                    mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&CHR=19&MAPS=rh,wiyac,g3,gb4,shgcg3,marsh,thon,loc,comp,sts&sts=64899&ZOOM=10


----------------------------------------------
                    Chr. 19
                    SHGC-35310
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=69684


                    mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&CHR=19&MAPS=rh,wiyac,g3,gb4,shgcg3,marsh,thon,loc,comp,sts&sts=69684&ZOOM=10


----------------------------------------------
----------------------------------------------
NOMENCLATURE:
        key is FUT1
                 fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, Bombay phenotype included)
----------------------------------------------
        key is LocusID
                2523
----------------------------------------------
OVERVIEW:
        key is Alias
                Fucosyltransferase-1 (Bombay phenotype)
                fucosyltransferase 1 (alpha (1,2) fucosyltransferase, Bombay phenotype included)
----------------------------------------------
        key is Alternate Symbols
                H, HH
----------------------------------------------
        key is Locus Type
                gene with protein product, function known or inferred
----------------------------------------------
        key is Product
                fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, Bombay phenotype included)
----------------------------------------------
        key is Proteome Summary
                Alpha(1,2)fucosyltransferase (alpha-2-fucosyltransferase, GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase); forms the H blood-group antigen
----------------------------------------------
REFSEQ:
            key is PROVISIONAL
                key is Domains
                        Glycosyl transferase family 11
url = /Structure/cdd/cddsrv.cgi?uid=pfam01531
score:1193

----------------------------------------------
                key is GenBank Source
                        M35531
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=M35531&dopt=DocSum&dispmax=1000


----------------------------------------------
                key is Protein
                        NP_000139
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4503805&db=Protein&dopt=GenPept
fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, Bombay phenotype included)

                        BL
url = /cgi-bin/Entrez/blink?pid=4503805&all=1


----------------------------------------------
                key is mRNA
                        NM_000148
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4503804&db=Nucleotide&dopt=GenBank


----------------------------------------------
            key is NCBI Genome Annotation
                key is Annotated transcripts/proteins for this locus
----------------------------------------------
                key is Evidence
                        supported by alignment with mRNA
----------------------------------------------
                key is Genomic Contig
                        NT_033316
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=NT_033316.1&db=Nucleotide&dopt=GenBank


                        gb
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NT_033316.1&from=1601299&to=1605878&strand=1&text=on&view=genbank


                        sv
url = /entrez/viewer.cgi?val=NT_033316.1&_gene=FUT1&view=graph


                        mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&MAPS=est,clone,loc,cntg-r&verbose=on&gnl=NT_033316.1&query=NT_033316.1&cmd=FOCUS


                        ev
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/evv.cgi?org=hs&contig=NT_033316.1&gene=FUT1&lid=2523


                        mm
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/modelmaker.cgi?contig=NT_033316.1&gene=FUT1&lid=2523


----------------------------------------------
                key is Protein
                        NP_000139
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4503805&db=Protein&dopt=GenPept


                        BL
url = /cgi-bin/Entrez/blink?pid=4503805&all=1


----------------------------------------------
                key is mRNA
                        NM_000148
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4503804&db=Nucleotide&dopt=GenBank


----------------------------------------------
----------------------------------------------
RELATIONSHIPS:
        key is Mouse Homology Maps
                    NCBI vs. MGD
                    7 23.20 cM
                    Fut1
url = ./LocRpt.cgi?l=14343


                    Hs
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=9606&chr=19&symbol=FUT1


                    Mm
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=10090&chr=7&symbol=Fut1


----------------------------------------------
                    UCSC vs. MGD
                    7 23.20 cM
                    Fut1
url = ./LocRpt.cgi?l=14343


                    Hs
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=9606&chr=19&symbol=FUT1


                    Mm
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=10090&chr=7&symbol=Fut1


----------------------------------------------
----------------------------------------------




Locus5797.htm
ADDITIONAL_LINKS:
                key is OMIM
                    176888
url = http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=176888


----------------------------------------------
                key is UniGene
                    Hs.154151
url = http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Hs&CID=154151


----------------------------------------------
                GeneCards
url = http://bioinformatics.weizmann.ac.il/cards-bin/carddisp?PTPRM


----------------------------------------------
----------------------------------------------
EXTERNAL_ANNOTATION:
        Not Available
FUNCTION:
        key is EC Number
                    3.1.3.48
url = http://www.expasy.ch/cgi-bin/nicezyme.pl?3.1.3.48


----------------------------------------------
                Gene Ontology
url = http://www.geneontology.org/


----------------------------------------------
        key is Other Ontologies
----------------------------------------------
                    Hydrolase
                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10809770


----------------------------------------------
                    Integral membrane
                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=1655529


----------------------------------------------
                    Receptor (signalling)
                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=1655529


----------------------------------------------
----------------------------------------------
        key is TM
----------------------------------------------
                    protein dephosphorylation
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0006470


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10809770


----------------------------------------------
                integral plasma membrane protein
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005887


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=1655529


----------------------------------------------
                transmembrane receptor protein tyrosine phosphatase
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0005001


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10809770


----------------------------------------------
----------------------------------------------
GENBANK:
                AA281524
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=1924204&db=Nucleotide&dopt=GenBank


                m
----------------------------------------------
                X58288
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=32455&db=Nucleotide&dopt=GenBank


                m
                CAA41226
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=32456&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=32456&all=1


----------------------------------------------
----------------------------------------------
LOCUS:
        Not Available
MAP:
        key is Chromosome
                18
                mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&chr=18&ovr=ideogr&maps=scan-r,est,loc&VERBOSE=ON&cmd=focus&fill=40&size=40&query=PTPRM


----------------------------------------------
        key is Cytogenetic
                18p11.2
                HUGO
url = http://gdbwww.gdb.org/gdb-bin/genera/accno?GDB:128093


----------------------------------------------
        key is Markers
                    Chr. -
                    G10607
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=2693


----------------------------------------------
                    Chr. 18
                    WI-9017
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=29528


                    mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&CHR=18&MAPS=rh,wiyac,g3,gb4,shgcg3,marsh,thon,loc,comp,sts&sts=29528&ZOOM=10


----------------------------------------------
                    Chr. 18
                    Cda09f01
url = http://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=60128


                    mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&CHR=18&MAPS=rh,wiyac,g3,gb4,shgcg3,marsh,thon,loc,comp,sts&sts=60128&ZOOM=10


----------------------------------------------
----------------------------------------------
NOMENCLATURE:
        key is LocusID
                5797
----------------------------------------------
        key is PTPRM
                 protein tyrosine phosphatase, receptor type, M
----------------------------------------------
OVERVIEW:
        key is Alias
                protein tyrosine phosphatase mu precursor
                protein tyrosine phosphatase, receptor type, mu polypeptide
----------------------------------------------
        key is Alternate Symbols
                RPTPM, RPTPU, PTPRL1, HR-PTPU, R-PTP-MU
----------------------------------------------
        key is Locus Type
                gene with protein product, function known or inferred
----------------------------------------------
        key is Product
                protein tyrosine phosphatase, receptor type, M precursor
----------------------------------------------
        key is Proteome Summary
                Receptor-type protein tyrosine phosphatase M
----------------------------------------------
        key is RefSeqSummary
                The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP possesses an extracellular region, a single transmembrane region, and two tandem catalytic domains, and thus represents a receptor-type PTP. The extracellular region contains a meprin-A5 antigen-PTP mu (MAM) domain, an Ig-like domain and four fibronectin type III-like repeats. This PTP has been shown to mediate cell-cell aggregation through the interaction with another molecule of this PTP on an adjacent cell. This PTP can interact with scaffolding protein RACK1/GNB2L1, which may be necessary for the downstream signaling in response to cell-cell adhesion.
----------------------------------------------
REFSEQ:
            key is REVIEWED
                key is Domains
                            MAM domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00629
score:406

----------------------------------------------
                            Immunoglobulin
url = /Structure/cdd/cddsrv.cgi?uid=smart00409
score:102

----------------------------------------------
                            Fibronectin type 3 domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00060
score:101

----------------------------------------------
                            Fibronectin type III domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00041
score:126

----------------------------------------------
                            Protein-tyrosine phosphatase
url = /Structure/cdd/cddsrv.cgi?uid=pfam00102
score:800

----------------------------------------------
                            Dual specificity phosphatase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=pfam00782
score:86

----------------------------------------------
                            Dual specificity phosphatase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00195
score:84

----------------------------------------------
                            Protein tyrosine phosphatase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00194
score:857

----------------------------------------------
                            Protein tyrosine phosphatase, catalytic domain motif
url = /Structure/cdd/cddsrv.cgi?uid=smart00404
score:324

----------------------------------------------
                            Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
url = /Structure/cdd/cddsrv.cgi?uid=smart00137
score:436

----------------------------------------------
----------------------------------------------
                key is GenBank Source
                        AA281524,X58288
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=AA281524,X58288&dopt=DocSum&dispmax=1000


----------------------------------------------
                key is Protein
                        NP_002836
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=18860904&db=Protein&dopt=GenPept
protein tyrosine phosphatase, receptor type, M precursor

                        BL
url = /cgi-bin/Entrez/blink?pid=18860904&all=1


----------------------------------------------
                key is mRNA
                        NM_002845
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=18860903&db=Nucleotide&dopt=GenBank


----------------------------------------------
            key is NCBI Genome Annotation
                key is Annotated transcripts/proteins for this locus
----------------------------------------------
                key is Domains
                            Protein-tyrosine phosphatase
url = /Structure/cdd/cddsrv.cgi?uid=pfam00102
score:766

----------------------------------------------
                            Dual specificity phosphatase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00195
score:84

----------------------------------------------
                            Protein tyrosine phosphatase, catalytic domain
url = /Structure/cdd/cddsrv.cgi?uid=smart00194
score:786

----------------------------------------------
                            Protein tyrosine phosphatase, catalytic domain motif
url = /Structure/cdd/cddsrv.cgi?uid=smart00404
score:310

----------------------------------------------
----------------------------------------------
                key is Evidence
                        supported by alignment with both mRNA and ESTs (15)
----------------------------------------------
                key is Genomic Contig
                        NT_030853
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=NT_030853.3&db=Nucleotide&dopt=GenBank


                        gb
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NT_030853.3&from=799980&to=910490&strand=2&text=on&view=genbank


                        sv
url = /entrez/viewer.cgi?val=NT_030853.3&_gene=PTPRM&view=graph


                        mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&MAPS=est,clone,loc,cntg-r&verbose=on&gnl=NT_030853.3&query=NT_030853.3&cmd=FOCUS


                        ev
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/evv.cgi?org=hs&contig=NT_030853.3&gene=PTPRM&lid=5797


                        mm
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/modelmaker.cgi?contig=NT_030853.3&gene=PTPRM&lid=5797


----------------------------------------------
                key is Model Protein
                        XP_012741
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=17491416&db=Protein&dopt=GenPept


                        BL
url = /cgi-bin/Entrez/blink?pid=17491416&all=1


----------------------------------------------
                key is Model mRNA
                        XM_012741
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=20557738&db=Nucleotide&dopt=GenBank


----------------------------------------------
----------------------------------------------
RELATIONSHIPS:
        key is Mouse Homology Maps
                    NCBI vs. MGD
                    17 38.30 cM
                    Ptprm
url = ./LocRpt.cgi?l=19274


                    Hs
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=9606&chr=18&symbol=PTPRM


                    Mm
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=10090&chr=17&symbol=Ptprm


----------------------------------------------
                    UCSC vs. MGD
                    17 38.30 cM
                    Ptprm
url = ./LocRpt.cgi?l=19274


                    Hs
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=9606&chr=18&symbol=PTPRM


                    Mm
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=10090&chr=17&symbol=Ptprm


----------------------------------------------
----------------------------------------------




Locus6373.htm
ADDITIONAL_LINKS:
                key is OMIM
                    604852
url = http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=604852


----------------------------------------------
                key is UniGene
                    Hs.103982
url = http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?ORG=Hs&CID=103982


----------------------------------------------
                GeneCards
url = http://bioinformatics.weizmann.ac.il/cards-bin/carddisp?SCYB11


----------------------------------------------
----------------------------------------------
EXTERNAL_ANNOTATION:
        Not Available
FUNCTION:
        key is GeneRIF
                     Gene References into Function:
----------------------------------------------
                11559369
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=11559369


                    chemotactic activity for CXCR3-expressing cells; substrate for dipeptidylpeptidase IV
----------------------------------------------
                Gene Ontology
url = http://www.geneontology.org/


----------------------------------------------
        key is Other Ontologies
----------------------------------------------
                    Response to injury
                    NR
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                    Anti-pathogen response
                    NR
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                    Cell migration/motility
                    NR
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                    Cell-to-cell signalling
                    NR
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
----------------------------------------------
        key is TM
----------------------------------------------
                    chemokine
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0008009


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                chemotaxis
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0006935


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                signal transduction
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0007165


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                cell-cell signalling
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0007267


                    E
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                inflammatory response
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0006954


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
                response to pathogenic fungi
url = http://godatabase.org/cgi-bin/go.cgi?view=details&depth=1&query=GO:0009621


                    P
                    Proteome
                    pm
url = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&doptcmdl=DocSum&list_uids=10233762


----------------------------------------------
----------------------------------------------
GENBANK:
                A82120
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=6731985&db=Nucleotide&dopt=GenBank


                g
                CAB69205
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=6731986&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=6731986&all=1


----------------------------------------------
                AF053972
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=3746491&db=Nucleotide&dopt=GenBank


                g
                AAD10206
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=3746492&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=3746492&all=1


----------------------------------------------
                AF077867
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5051637&db=Nucleotide&dopt=GenBank


                g
                AAD38327
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5051638&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=5051638&all=1


----------------------------------------------
                Y15221
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5689773&db=Nucleotide&dopt=GenBank


                g
                CAB51859
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5689774&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=5689774&all=1


----------------------------------------------
                AF002985
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2580585&db=Nucleotide&dopt=GenBank


                m
                AAC51845
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=2580586&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=2580586&all=1


----------------------------------------------
                AF030514
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=3219692&db=Nucleotide&dopt=GenBank


                m
                AAC39775
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=3219693&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=3219693&all=1


----------------------------------------------
                BC005292
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=13529004&db=Nucleotide&dopt=GenBank


                m
                AAH05292
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=13529005&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=13529005&all=1


----------------------------------------------
                U59286
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=1628562&db=Nucleotide&dopt=GenBank


                m
                AAB17374
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=1628563&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=1628563&all=1


----------------------------------------------
                U66096
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5058994&db=Nucleotide&dopt=GenBank


                m
                AAD38867
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=5058995&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=5058995&all=1


----------------------------------------------
                Y15220
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4225953&db=Nucleotide&dopt=GenBank


                m
                CAA75510
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4225954&db=Protein&dopt=GenPept


                BL
url = /cgi-bin/Entrez/blink?pid=4225954&all=1


----------------------------------------------
----------------------------------------------
LOCUS:
        Not Available
MAP:
        key is Chromosome
                4
                mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&chr=4&ovr=ideogr&maps=scan-r,est,loc&VERBOSE=ON&cmd=focus&fill=40&size=40&query=SCYB11


----------------------------------------------
        key is Cytogenetic
                4q21.2
                RefSeq
----------------------------------------------
NOMENCLATURE:
        key is LocusID
                6373
----------------------------------------------
        key is SCYB11
                 small inducible cytokine subfamily B (Cys-X-Cys), member 11
----------------------------------------------
OVERVIEW:
        key is Alias
                small inducible cytokine subfamily B (Cys-X-Cys), member 9B
----------------------------------------------
        key is Alternate Symbols
                IP9, B-R1, H174, IP-9, I-TAC, CXCL11, SCYB9B
----------------------------------------------
        key is Locus Type
                gene with protein product, function known or inferred
----------------------------------------------
        key is Product
                small inducible cytokine subfamily B (Cys-X-Cys), member 11 precursor
----------------------------------------------
        key is Proteome Summary
                Cytokine B11; CXC chemokine that has chemotactic activity on activated T cells
----------------------------------------------
        key is RefSeqSummary
                Chemokines are a group of small (approximately 8 to 14 kD), mostly basic, structurally related molecules that regulate cell trafficking of various types of leukocytes through interactions with a subset of 7-transmembrane, G protein-coupled receptors. Chemokines also play fundamental roles in the development, homeostasis, and function of the immune system, and they have effects on cells of the central nervous system as well as on endothelial cells involved in angiogenesis or angiostasis. Chemokines are divided into 2 major subfamilies, CXC and CC.  Small inducible cytokine subfamily B member 11 (SCYB11) is a CXC member of the chemokine superfamily. It induces a chemotactic response in activated T-cells and is the dominant ligand for CXC receptor-3. The gene encoding SCYB11 protein contains 4 exons and at least three polyadenylation signals which might reflect cell-specific regulation of expression. IFN-gamma is a potent inducer of SCYB11 gene transcription.
----------------------------------------------
REFSEQ:
            key is REVIEWED
                key is Domains
                            Small cytokines (intecrine/chemokine)
url = /Structure/cdd/cddsrv.cgi?uid=pfam00048
score:76

----------------------------------------------
                            Intercrine alpha family (small cytokine C-X-C) (chemokine CXC).
url = /Structure/cdd/cddsrv.cgi?uid=smart00199
score:88

----------------------------------------------
----------------------------------------------
                key is GenBank Source
                        AF030514,U66096,Y15220
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=AF030514,U66096,Y15220&dopt=DocSum&dispmax=1000


----------------------------------------------
                key is Protein
                        NP_005400
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=4885589&db=Protein&dopt=GenPept
small inducible cytokine subfamily B (Cys-X-Cys), member 11 precursor

                        BL
url = /cgi-bin/Entrez/blink?pid=4885589&all=1


----------------------------------------------
                key is mRNA
                        NM_005409
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=14790145&db=Nucleotide&dopt=GenBank


----------------------------------------------
            key is NCBI Genome Annotation
                key is Annotated transcripts/proteins for this locus
----------------------------------------------
                key is Domains
                            Small cytokines (intecrine/chemokine), interleukin-8 like
url = /Structure/cdd/cddsrv.cgi?uid=pfam00048
score:87

----------------------------------------------
                            Intercrine alpha family (small cytokine C-X-C) (chemokine CXC).
url = /Structure/cdd/cddsrv.cgi?uid=smart00199
score:89

----------------------------------------------
----------------------------------------------
                key is Evidence
                        supported by alignment with mRNA
----------------------------------------------
                key is Genomic Contig
                        NT_022760
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=NT_022760.10&db=Nucleotide&dopt=GenBank


                        gb
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=NT_022760.10&from=2657918&to=2660426&strand=1&text=on&view=genbank


                        sv
url = /entrez/viewer.cgi?val=NT_022760.10&_gene=SCYB11&view=graph


                        mv
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/maps.cgi?ORG=hum&MAPS=est,clone,loc,cntg-r&verbose=on&gnl=NT_022760.10&query=NT_022760.10&cmd=FOCUS


                        ev
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/evv.cgi?org=hs&contig=NT_022760.10&gene=SCYB11&lid=6373


                        mm
url = http://www.ncbi.nlm.nih.gov/cgi-bin/Entrez/modelmaker.cgi?contig=NT_022760.10&gene=SCYB11&lid=6373


----------------------------------------------
                key is Model Protein
                        XP_113426
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=20469054&db=Protein&dopt=GenPept


                        BL
url = /cgi-bin/Entrez/blink?pid=20469054&all=1


----------------------------------------------
                key is Model mRNA
                        XM_113426
url = http://www.ncbi.nlm.nih.gov/entrez/viewer.cgi?val=20469053&db=Nucleotide&dopt=GenBank


----------------------------------------------
----------------------------------------------
RELATIONSHIPS:
        key is Mouse Homology Maps
                    NCBI vs. MGD
                    Scyb11
url = ./LocRpt.cgi?l=56066


                    Hs
url = /Homology/view.cgi?map=ncbi_mgd&tax_id=9606&chr=4&symbol=SCYB11


----------------------------------------------
                    UCSC vs. MGD
                    Scyb11
url = ./LocRpt.cgi?l=56066


                    Hs
url = /Homology/view.cgi?map=ucsc_mgd&tax_id=9606&chr=4&symbol=SCYB11


----------------------------------------------
----------------------------------------------




