BLAST Search Results

    TBLASTN 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|729325|sp|P39483|DHG2_BACME GLUCOSE 1-DEHYDROGENASE
    II (GLCDH-II).
             (261 letters)

    Database: Non-redundant Database of GenBank STS Division
               89,405 sequences; 32,867,852 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 7 Blast Hits on the Query Sequence

                                                                       Score     E
    Sequences producing significant alignments:                        (bits)  Value

    emb|AJ229891|KLAJ9891  Kluyveromyces lactis DNA fragment for...    47  1e-05
    gb|G27169|G27169  human STS SHGC-31983.                            43  1e-04
    emb|AJ230012|KLAJ0012  Kluyveromyces lactis DNA fragment for...    39  0.002
    gb|G26965|G26965  human STS SHGC-31083.                            31  0.76
    gb|AF106665.1|AF106665  Mus musculus chromosome 6 clone D6wu...    29  2.2
    gb|L09988|HUM4STS889  Human Chromosome 4 (clone p4-1095) STS...    29  2.2
    gb|G21322|G21322  human STS WI-12250.                              29  3.8

     emb|AJ229891|KLAJ9891 Kluyveromyces lactis DNA fragment for sequence tagged site, clone
               okam5d07r [Kluyveromyces lactis]
               Length = 230

     Score = 46.9 bits (109), Expect = 1e-05
     Identities = 25/72 (34%), Positives = 44/72 (60%), Gaps = 3/72 (4%)
     Frame = +1

    Query: 108 NWNQVIDTNLTGAFLGSREAIKYFVEN---DIKGNVINMSSVHEMIPWPLFVHYAASKGG 164
               +W QVIDTN+ G F   + A+     +   D +  V+N+S+V+ ++  P    Y A+K
    Sbjct: 1   SWRQVIDTNINGTFYTLKYALPLMESSSSPDSEAAVVNLSAVNGLVGIPGISPYTATKHA 180

    Query: 165 MKLMTETLALEYAPK 179
               +  +T+++ALEYA +
    Sbjct: 181 VIGITQSVALEYAER 225

     gb|G27169|G27169 human STS SHGC-31983.
               Length = 594

     Score = 43.4 bits (100), Expect = 1e-04
     Identities = 21/73 (28%), Positives = 34/73 (45%)
     Frame = -1

    Query: 177 APKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQA 236
               AP   RVN + P  + T +    + DP +   + +  P+G   + E +     FL S ++
    Sbjct: 312 APXRXRVNAVXPXVVMTSMGQATWXDPXKAXTMLNRXPLGXFAEVEHVVKAILFLLSDRS 133

    Query: 237 SYVTGITLFADGG 249
                  TG TL  +GG
    Sbjct: 132 GMTTGSTLPVEGG 94

     emb|AJ230012|KLAJ0012 Kluyveromyces lactis DNA fragment for sequence tagged site, clone
               okam6d01d [Kluyveromyces lactis]
               Length = 199

     Score = 39.5 bits (90), Expect = 0.002
     Identities = 18/49 (36%), Positives = 26/49 (52%)
     Frame = -1

    Query: 200 FADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADG 248
               F D + +    S+IPMG  G P+E+     + AS  ++Y TG  L  DG
    Sbjct: 157 FVDEDLKNKWHSLIPMGREGLPQELVGAYLYFASDASTYTTGSDLLVDG 11

     gb|G26965|G26965 human STS SHGC-31083.
               Length = 268

     Score = 30.9 bits (68), Expect = 0.76
     Identities = 12/37 (32%), Positives = 19/37 (50%)
     Frame = -1

    Query: 214 PMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGM 250
               PMG  G PE++  V A      +  +TG ++   GG+
    Sbjct: 268 PMGXXGDPEDVXDVXAXXXXEXSGXITGTSVEVTGGL 158

     gb|AF106665.1|AF106665 Mus musculus chromosome 6 clone D6wum9 map between Nkrp1 and Prp
               strain C57BL/6J, sequence tagged site
               Length = 299

     Score = 29.3 bits (64), Expect = 2.2
     Identities = 17/55 (30%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
     Frame = -2

    Query: 142 NMSSVHEMIPWPLFVHYAASKGGMKLMTETL--ALEYAPKGIRVNNIGPGAIDTPIN 196
               ++S    +I +P F+    S  G  L+  +L  A+ + P GI V+++GP ++ T +N
    Sbjct: 172 SLSPTQYLIMFPSFLPCPLSHPGPFLLPSSLVIAVFFLPNGIEVSSLGPFSLRTLLN 2

     gb|L09988|HUM4STS889 Human Chromosome 4 (clone p4-1095) STS4-889.
               Length = 412

     Score = 29.3 bits (64), Expect = 2.2
     Identities = 14/34 (41%), Positives = 22/34 (64%)
     Frame = -1

    Query: 7   DKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRS 40
               DKV  V GGS+G+GRA+A    ++  ++ V  R+
    Sbjct: 316 DKVCAVFGGSRGIGRAVAQLMARKGYRLAVIARN 215

     gb|G21322|G21322 human STS WI-12250.
               Length = 586

     Score = 28.6 bits (62), Expect = 3.8
     Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
     Frame = +1

    Query: 98  PVPSHELSLENWNQ-VIDTNLTGAFLGSREAIKYFVENDI 136
               PVP  ELS  +W+Q  + T+ T  F  S     YF  N I
    Sbjct: 220 PVPMQELSKVHWSQFFLTTSPTMTFFFSHYLANYFFRNSI 339

      Database: Non-redundant Database of GenBank STS Division
        Posted date:  Dec 18, 1999  7:45 PM
      Number of letters in database: 32,867,852
      Number of sequences in database:  89,405

    Lambda     K      H
       0.315    0.134    0.378

    Gapped
    Lambda     K      H
       0.270   0.0470    0.230

    Matrix: BLOSUM62
    Gap Penalties: Existence: 11, Extension: 1
    Number of Hits to DB: 6334151
    Number of Sequences: 89405
    Number of extensions: 57201
    Number of successful extensions: 152
    Number of sequences better than 10.0: 14
    Number of HSP's better than 10.0 without gapping: 5
    Number of HSP's successfully gapped in prelim test: 2
    Number of HSP's that attempted gapping in prelim test: 146
    Number of HSP's gapped (non-prelim): 7
    length of query: 261
    length of database: 10,955,950
    effective HSP length: 50
    effective length of query: 211
    effective length of database: 6,485,700
    effective search space: 1368482700
    effective search space used: 1368482700
    frameshift window, decay const: 50,  0.1
    T: 13
    A: 40
    X1: 16 ( 7.3 bits)
    X2: 38 (14.8 bits)
    X3: 64 (24.9 bits)
    S1: 42 (22.0 bits)
    S2: 59 (27.4 bits)