PROSITE: PDOC00640 (documentation file)

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# PROSITE: PDOC00640 (documentation)

    {PDOC00640}
    {PS00812; GLYCOSYL_HYDROL_F8}
    {BEGIN}
    ******************************************
    * Glycosyl hydrolases family 8 signature *
    ******************************************

    The microbial degradation  of cellulose and  xylans requires  several types of
    enzymes such as endoglucanases (EC 3.2.1.4),  cellobiohydrolases (EC 3.2.1.91)
    (exoglucanases), or xylanases (EC 3.2.1.8) [1,2].  Fungi and bacteria produces
    a spectrum of cellulolytic  enzymes (cellulases)  and  xylanases which, on the
    basis of sequence similarities,  can be classified into families. One of these
    families is known as the cellulase family D [3] or as  the glycosyl hydrolases
    family 8  [4,E1].  The  enzymes  which  are  currently known to belong to this
    family are listed below.

     - Acetobacter xylinum endonuclease cmcAX.
     - Bacillus strain KSM-330 acidic endonuclease K (Endo-K).
     - Cellulomonas josui endoglucanase 2 (celB).
     - Cellulomonas uda endoglucanase.
     - Clostridium cellulolyticum endoglucanases C (celcCC).
     - Clostridium thermocellum endoglucanases A (celA).
     - Erwinia chrysanthemi minor endoglucanase y (celY).
     - Bacillus circulans beta-glucanase (EC 3.2.1.73).
     - Escherichia coli hypothetical protein yhjM.

    The most conserved region in  these enzymes is  a stretch of about 20 residues
    that contains  two conserved aspartate. The first asparatate is thought [5] to
    act as the nucleophile in the catalytic mechanism. We have used this region as
    a signature pattern.

    -Consensus pattern: A-[ST]-D-[AG]-D-x(2)-[IM]-A-x-[SA]-[LIVM]-[LIVMG]-x-A-
                        x(3)-[FW]
                        [The first D is an active site residue]
    -Sequences known to belong to this class detected by the pattern: ALL.
    -Other sequence(s) detected in SWISS-PROT: NONE.

    -Expert(s) to contact by email:
                       Henrissat B.; bernie@afmb.cnrs-mrs.fr

    -Last update: November 1997 / Text revised.

    [ 1] Beguin P.
         Annu. Rev. Microbiol. 44:219-248(1990).
    [ 2] Gilkes N.R., Henrissat B., Kilburn D.G., Miller R.C. Jr., Warren R.A.J.
         Microbiol. Rev. 55:303-315(1991).
    [ 3] Henrissat B., Claeyssens M., Tomme P., Lemesle L., Mornon J.-P.
         Gene 81:83-95(1989).
    [ 4] Henrissat B.
         Biochem. J. 280:309-316(1991).
    [ 5] Alzari P.M., Souchon H., Dominguez R.
         Structure 4:265-275(1996).
    [E1] http://www.expasy.ch/cgi-bin/lists?glycosid.txt

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    {END}

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