Uses of Class org.biojava.bio.dp.DP (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
org.biojava.bio.dp.DP

Packages that use DP
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.
org.biojava.bio.dp.onehead |
org.biojava.bio.dp.twohead |

Uses of DP in org.biojava.bio.dp

Methods in org.biojava.bio.dp that return DP
`DP` | `DPFactory.createDP(MarkovModel model)`
`DP` | `DPFactory.DefaultFactory.createDP(MarkovModel model)`
`DP` | `AbstractTrainer.getDP()`
`DP` | `TrainingAlgorithm.getDP()`

Constructors in org.biojava.bio.dp with parameters of type DP
`AbstractTrainer(DP dp)`
`BaumWelchSampler(DP dp)`
`BaumWelchTrainer(DP dp)`

Uses of DP in org.biojava.bio.dp.onehead

Subclasses of DP in org.biojava.bio.dp.onehead
`class` | `SingleDP` An implementation of DP that aligns a single sequence against a single model.

Constructors in org.biojava.bio.dp.onehead with parameters of type DP
`SingleDPMatrix(DP dp, SymbolList symList)`

Uses of DP in org.biojava.bio.dp.twohead

Subclasses of DP in org.biojava.bio.dp.twohead
`class` | `PairwiseDP` Algorithms for dynamic programming (alignments) between pairs of SymbolLists.

Methods in org.biojava.bio.dp.twohead with parameters of type DP
`Class` | `DPCompiler.generateBackwardClass(DP dp)`
`Class` | `DPCompiler.generateForardClass(DP dp)`
`Class` | `DPCompiler.generateViterbiClass(DP dp)`
`CellCalculatorFactory` | `DPInterpreter.Maker.make(DP dp)`
`CellCalculatorFactory` | `CellCalculatorFactoryMaker.make(DP dp)`
`CellCalculatorFactory` | `DPCompiler.make(DP dp)`

Constructors in org.biojava.bio.dp.twohead with parameters of type DP
`DPInterpreter(DP dp)`
`PairDPMatrix(DP dp, SymbolList seq0, SymbolList seq1)`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES