Uses of Interface org.biojavax.bio.BioEntry (BioJava-1.5-beta API)

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## Uses of Interface
org.biojavax.bio.BioEntry

Packages that use BioEntry
org.biojavax | The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio | Classes to represent biological entities and their relationships.
org.biojavax.bio.db | Interactions between biojavax objects and a DB.
org.biojavax.bio.db.biosql |
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io | Classes to support the I/O of RichSequence and Bioentry objects.

Uses of BioEntry in org.biojavax

Methods in org.biojavax that return BioEntry
`BioEntry` | `CrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry`
`BioEntry` | `DummyCrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry` All responses are null.

Uses of BioEntry in org.biojavax.bio

Classes in org.biojavax.bio that implement BioEntry
`class` | `SimpleBioEntry` Reference implementation of a BioEntry object which has no features or sequence.

Methods in org.biojavax.bio that return BioEntry
`BioEntry` | `BioEntryRelationship.getObject()` Returns the object of this relationship (ie.
`BioEntry` | `SimpleBioEntryRelationship.getObject()` Returns the object of this relationship (ie.
`BioEntry` | `BioEntryRelationship.getSubject()` Returns the subject of this relationship (ie.
`BioEntry` | `SimpleBioEntryRelationship.getSubject()` Returns the subject of this relationship (ie.
`BioEntry` | `BioEntryIterator.nextBioEntry()`

Constructors in org.biojavax.bio with parameters of type BioEntry
`SimpleBioEntryRelationship(BioEntry object, BioEntry subject, ComparableTerm term, Integer rank)` Creates a new instance of SimpleBioEntryRelationship.

Uses of BioEntry in org.biojavax.bio.db

Methods in org.biojavax.bio.db that return BioEntry
`BioEntry` | `AbstractRichSequenceDB.getBioEntry(String id)`
`BioEntry` | `BioEntryDBLite.getBioEntry(String id)` Retrieve a single BioEntry by its id.
`BioEntry` | `HashBioEntryDB.getBioEntry(String id)`

Methods in org.biojavax.bio.db with parameters of type BioEntry
`void` | `AbstractBioEntryDB.addBioEntry(BioEntry seq)`
`void` | `AbstractRichSequenceDB.addBioEntry(BioEntry seq)`
`void` | `BioEntryDBLite.addBioEntry(BioEntry seq)` Adds a sequence to the database.
`void` | `HashBioEntryDB.addBioEntry(BioEntry seq)` Add a BioEntry, the name of the BioEntry will be used as the ID
`protected void` | `HashBioEntryDB.addBioEntry(String id, BioEntry seq)`

Uses of BioEntry in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql that return BioEntry
`BioEntry` | `BioSQLBioEntryDB.getBioEntry(String id)`
`BioEntry` | `BioSQLCrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry`

Methods in org.biojavax.bio.db.biosql with parameters of type BioEntry
`void` | `BioSQLBioEntryDB._addBioEntry(BioEntry seq)`
`void` | `BioSQLBioEntryDB.addBioEntry(BioEntry seq)`

Uses of BioEntry in org.biojavax.bio.seq

Subinterfaces of BioEntry in org.biojavax.bio.seq
`interface` | `RichSequence` A rich sequence is a combination of a org.biojavax.bio.Bioentry and a Sequence.

Classes in org.biojavax.bio.seq that implement BioEntry
`class` | `SimpleRichSequence` A simple implementation of RichSequence.
`class` | `ThinRichSequence` A simple implementation of RichSequence.

Methods in org.biojavax.bio.seq that return BioEntry
`BioEntry` | `RichSequence.IOTools.SingleRichSeqIterator.nextBioEntry()`

Uses of BioEntry in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io that return BioEntry
`BioEntry` | `RichStreamReader.nextBioEntry()`

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