Uses of Class org.biojava.utils.Unchangeable (BioJava-1.5-beta API)

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## Uses of Class
org.biojava.utils.Unchangeable

Packages that use Unchangeable
org.biojava.bio.dist | Probability distributions over Alphabets.
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.
org.biojava.bio.program.das | Development client for the Distributed Annotation System.
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.db.biofetch | Client for the OBDA BioFetch protocol.
org.biojava.bio.seq.db.flat | Support for OBDA flatfile databases.
org.biojava.bio.seq.homol | The classes and interfaces for defining sequence similarity and honology.
org.biojava.bio.seq.impl | Standard in-memory implementations of `Sequence` and `Feature`.
org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them.
org.biojava.ontology | A general-purpose API for ontologies.
org.biojavax | The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features.

Uses of Unchangeable in org.biojava.bio.dist

Subclasses of Unchangeable in org.biojava.bio.dist
`class` | `GapDistribution` This distribution emits gap symbols.

Uses of Unchangeable in org.biojava.bio.dp

Subclasses of Unchangeable in org.biojava.bio.dp
`class` | `SimpleStatePath` A no-frills implementation of StatePath.

Uses of Unchangeable in org.biojava.bio.program.das

Subclasses of Unchangeable in org.biojava.bio.program.das
`class` | `DASSequenceDB` Collection of sequences retrieved from the DAS network.

Uses of Unchangeable in org.biojava.bio.seq

Subclasses of Unchangeable in org.biojava.bio.seq
`class` | `CircularView` A circular view onto another Sequence object.
`static class` | `FeatureHolder.EmptyFeatureHolder`

Uses of Unchangeable in org.biojava.bio.seq.db.biofetch

Subclasses of Unchangeable in org.biojava.bio.seq.db.biofetch
`class` | `BioFetchSequenceDB` Simple SequenceDB implementation backed by a BioFetch (HTTP) server.

Uses of Unchangeable in org.biojava.bio.seq.db.flat

Subclasses of Unchangeable in org.biojava.bio.seq.db.flat
`class` | `FlatSequenceDB` `FlatSequenceDB` is an OBDA flatfile sequence databank implementation.

Uses of Unchangeable in org.biojava.bio.seq.homol

Subclasses of Unchangeable in org.biojava.bio.seq.homol
`static class` | `SimilarityPairFeature.EmptyPairwiseAlignment` `EmptyPairwiseAlignment` empty pairwise alignment which has labels to empty symbol lists.

Uses of Unchangeable in org.biojava.bio.seq.impl

Subclasses of Unchangeable in org.biojava.bio.seq.impl
`class` | `ViewSequence` A view onto another Sequence object.

Uses of Unchangeable in org.biojava.bio.seq.io

Subclasses of Unchangeable in org.biojava.bio.seq.io
`class` | `CharacterTokenization` Implementation of SymbolTokenization which binds symbols to single unicode characters.
`class` | `CrossProductTokenization` Tokenization for cross-product alphabets.
`class` | `DoubleTokenization`
`class` | `IntegerTokenization`
`class` | `NameTokenization` Simple implementation of SymbolTokenization which uses the `name' field of the symbols.
`class` | `SubIntegerTokenization`
`class` | `WordTokenization` Base class for tokenizations which accept whitespace-separated `words'.

Uses of Unchangeable in org.biojava.bio.symbol

Subclasses of Unchangeable in org.biojava.bio.symbol
`class` | `DoubleAlphabet` An efficient implementation of an Alphabet over the infinite set of double values.
`static class` | `DoubleAlphabet.DoubleRange` A range of double values.
`static class` | `DoubleAlphabet.DoubleSymbol` A single double value.
`static class` | `DoubleAlphabet.SubDoubleAlphabet` A class to represent a contiguous range of double symbols.
`class` | `IntegerAlphabet` An efficient implementation of an Alphabet over the infinite set of integer values.
`static class` | `IntegerAlphabet.IntegerSymbol` A single int value.
`class` | `RelabeledAlignment` An alignment that relabels another alignment.
`class` | `SoftMaskedAlphabet` Soft masking is usually displayed by making the masked regions somehow different from the non masked regions.
`class` | `SoftMaskedAlphabet.CaseSensitiveTokenization` This `SymbolTokenizer` works with a delegate to softmask symbol tokenization as appropriate.

Uses of Unchangeable in org.biojava.ontology

Subclasses of Unchangeable in org.biojava.ontology
`class` | `IntegerOntology`
`class` | `IntegerOntology.IntTerm`
`static class` | `Triple.Impl` Basic in-memory implementation of a Triple in an ontology

Uses of Unchangeable in org.biojavax

Subclasses of Unchangeable in org.biojavax
`class` | `EmptyRichAnnotation` A place holder for a RichAnnotation that prevents null having to be used
`class` | `SimpleDocRefAuthor` Represents an author of a documentary reference.
`class` | `SimpleRankedCrossRef` Simple implementation of RankedCrossRef.

Uses of Unchangeable in org.biojavax.bio.seq

Subclasses of Unchangeable in org.biojavax.bio.seq
`class` | `EmptyRichLocation` An Empty implementation of RichLocation.

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