Uses of Interface org.biojava.bio.program.tagvalue.TagValueListener (BioJava-1.5-beta API)

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## Uses of Interface
org.biojava.bio.program.tagvalue.TagValueListener

Packages that use TagValueListener
org.biojava.bio.annodb | Databases of generic structured data (annotation) objects.
org.biojava.bio.program.formats | Experimental parsers using the tagvalue framework.
org.biojava.bio.program.tagvalue | Process files as streams of records, each with tags with values.
org.biojava.bio.program.unigene | Objects for representing Unigene clusters.

Uses of TagValueListener in org.biojava.bio.annodb

Methods in org.biojava.bio.annodb with parameters of type TagValueListener
`ParserListener` | `IndexedAnnotationDB.ParserListenerFactory.getParserListener(TagValueListener listener)` Get the ParserListener for a TagValueListener.
`ParserListener` | `IndexedAnnotationDB.StaticMethodRPFactory.getParserListener(TagValueListener tvl)`

Uses of TagValueListener in org.biojava.bio.program.formats

Methods in org.biojava.bio.program.formats with parameters of type TagValueListener
`ParserListener` | `Swissprot.getParserListener(TagValueListener listener)`
`ParserListener` | `Enzyme.getParserListener(TagValueListener listener)`
`ParserListener` | `Ligand.Enzyme.getParserListener(TagValueListener listener)`
`ParserListener` | `Ligand.Reaction.getParserListener(TagValueListener listener)`
`ParserListener` | `Ligand.Compound.getParserListener(TagValueListener listener)`
`ParserListener` | `Embl.getParserListener(TagValueListener listener)`
`ParserListener` | `Format.getParserListener(TagValueListener listener)` Retrieve a ParserListener pair for the format that will pass all events on to a listener.

Uses of TagValueListener in org.biojava.bio.program.tagvalue

Subinterfaces of TagValueListener in org.biojava.bio.program.tagvalue
`interface` | `TagValueWrapper` Interface for TagValueListeners that wrap other TagValueListeners

Classes in org.biojava.bio.program.tagvalue that implement TagValueListener
`class` | `AbstractWrapper` An abstract TagValueWrapper that does nothing!
`class` | `Aggregator` Joins multipel values into single values.
`class` | `AnnotationBuilder` Builds an Annotation tree from TagValue events using an AnnotationType to work out which fields are of what type.
`class` | `Echo` A simple listener that just echoes events back to the console.
`class` | `Indexer` Listens to tag-value events and passes on indexing events to an IndexStore.
`class` | `Indexer2` Listens to tag-value events and passes on indexing events to an IndexStore.
`class` | `MultiTagger` Partician multiple values for a tag into their own tag groups.
`class` | `RegexFieldFinder`
`class` | `SimpleTagValueWrapper` Helper class to wrap one TagValueListener inside another one.
`class` | `StateMachine` This class implements a state machine for parsing events from the Parser class.
`class` | `StateMachine.SimpleStateListener` a basic listener for a State.
`class` | `TagDelegator` Pushes a new parser and listener, or delegate to a listener depending on the tag.
`class` | `TagDropper` Silently drop all tags except those specified, and pass the rest onto a delegate.
`class` | `TagRenamer` Rename tags using a TagMapper.
`class` | `ValueChanger` Intercept the values associated with some tags and change them systematically.

Fields in org.biojava.bio.program.tagvalue declared as TagValueListener
`protected TagValueListener` | `StateMachine.delegate`

Methods in org.biojava.bio.program.tagvalue that return TagValueListener
`TagValueListener` | `SimpleTagValueWrapper.getDelegate()`
`TagValueListener` | `TagValueWrapper.getDelegate()` get listener to which all calls will be delegated
`TagValueListener` | `StateMachine.getDelegate()`
`TagValueListener` | `AbstractWrapper.getDelegate()`
`TagValueListener` | `ParserListener.getListener()` `getListener` returns the listener of the pair.
`TagValueListener` | `StateMachine.State.getListener()`
`TagValueListener` | `StateMachine.BasicState.getListener()` return the TagValueListener assigned to this State.
`TagValueListener` | `TagDelegator.getListener(Object tag)`

Methods in org.biojava.bio.program.tagvalue with parameters of type TagValueListener
`static ParserListener` | `Formats.createEmblParserListener(TagValueListener listener)`
`static ParserListener` | `Formats.createSwissprotParserListener(TagValueListener listener)`
`void` | `TagValueContext.pushParser(TagValueParser subParser, TagValueListener subListener)` Push a parser and listener pair onto the parser stack.
`boolean` | `Parser.read(BufferedReader reader, TagValueParser parser, TagValueListener listener)`
`void` | `SimpleTagValueWrapper.setDelegate(TagValueListener delegate)`
`void` | `TagValueWrapper.setDelegate(TagValueListener delegate)` set listener to which all calls will be delegated
`void` | `StateMachine.setDelegate(TagValueListener delegate)` TagValueWrapper interface
`void` | `AbstractWrapper.setDelegate(TagValueListener delegate)`
`void` | `TagDelegator.setListener(Object tag, TagValueListener listener)`
`void` | `StateMachine.BasicState.setListener(TagValueListener listener)` set a TagValueListener for this State.
`void` | `TagDelegator.setParserListener(Object tag, TagValueParser parser, TagValueListener listener)`

Constructors in org.biojava.bio.program.tagvalue with parameters of type TagValueListener
`Aggregator(TagValueListener listener, BoundaryFinder observer, String joiner)`
`MultiTagger(TagValueListener listener, BoundaryFinder observer)`
`ParserListener(TagValueParser parser, TagValueListener listener)` Creates a new `ParserListener` instance.
`RegexFieldFinder(TagValueListener delegate, Pattern pattern, String[] tags, boolean inLine)` Creates a new RegexFiledFinder.
`SimpleTagValueWrapper(TagValueListener delegate)` Build a SimpleTagValueWrapper that will forward everything to a delegate.
`StateMachine.BasicState(String label, TagValueListener listener)` when this constructor is used, a fixed listener is used with this state.
`TagDelegator(TagValueListener delegate)`
`TagDropper(TagValueListener tvl)` Create a new TagDropper that will pass on all retained tags and values to tvl.
`TagRenamer(TagValueListener delegate, PropertyChanger mapper)` Build a new TagRenamer with a delegate and mapper.
`ValueChanger(TagValueListener delegate)`
`ValueChanger(TagValueListener delegate, ChangeTable changeTable)` Create a new changer that will pass the modified event stream to a delegate.

Uses of TagValueListener in org.biojava.bio.program.unigene

Methods in org.biojava.bio.program.unigene with parameters of type TagValueListener
`static ParserListener` | `UnigeneTools.buildDataParser(TagValueListener listener)` Generate a tag-value parser for unigene data files that will pass all parsing events on to your listener.
`static ParserListener` | `UnigeneTools.buildLibInfoParser(TagValueListener listener)` Generate a tag-value parser for the library info unigene files.

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