Uses of Interface org.biojava.bio.program.ssaha.SearchListener (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojava.bio.program.ssaha.SearchListener

Packages that use SearchListener
org.biojava.bio.program.ssaha | SSAHA sequence searching API.

Uses of SearchListener in org.biojava.bio.program.ssaha

Classes in org.biojava.bio.program.ssaha that implement SearchListener
`class` | `HitMerger` A listener that merges overlapping hits and culls all hits under a given length.
`static class` | `SearchListener.Echo` A SearchListener that prints events out to a PrintStream.
`static class` | `SearchListener.FilterByLength` A simple listener that filters out all hits that are too short.
`static class` | `SearchListener.Tee` A SearchListener that passes events on to two delegate listeners.
`static class` | `SearchListener.Wrapper` A simple wrapper implementation.

Methods in org.biojava.bio.program.ssaha with parameters of type SearchListener
`void` | `CompactedDataStore.fireHits(int word, int offset, SearchListener listener)`
`void` | `CompactedDataStore.search(String seqID, SymbolList symList, SearchListener listener)`
`void` | `DataStore.search(String id, SymbolList symList, SearchListener listener)` Search the DataStore with a symbol list.

Constructors in org.biojava.bio.program.ssaha with parameters of type SearchListener
`HitMerger(SearchListener delegate, int minLength)` Build a new HitMerger that will pass events on to a delegate.
`SearchListener.FilterByLength(SearchListener delegate, int minLength)`
`SearchListener.Tee(SearchListener d1, SearchListener d2)`
`SearchListener.Wrapper(SearchListener delegate)`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES