Uses of Interface org.biojava.bio.seq.Feature (BioJava-1.5-beta API)

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## Uses of Interface
org.biojava.bio.seq.Feature

Packages that use Feature
org.biojava.bio.gui.sequence | Graphical displays of biological sequences and associated annotations.
org.biojava.bio.molbio | The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
org.biojava.bio.program.das | Development client for the Distributed Annotation System.
org.biojava.bio.program.gff | GFF manipulation.
org.biojava.bio.program.xff | Event-driven parsing system for the Extensible Feature Format (XFF).
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.seq.homol | The classes and interfaces for defining sequence similarity and honology.
org.biojava.bio.seq.impl | Standard in-memory implementations of `Sequence` and `Feature`.
org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.seq.io.agave | Classes for converting between AGAVE XML and BioJava objects.
org.biojava.bio.seq.projection | Code for projecting Feature objects and systematically altering their properties.
org.biojavax.bio.db.biosql |
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features.

Uses of Feature in org.biojava.bio.gui.sequence

Methods in org.biojava.bio.gui.sequence with parameters of type Feature
`String` | `FeatureLabelRenderer.LabelMaker.makeLabel(Feature f)`
`String` | `FeatureLabelRenderer.SourceLabelMaker.makeLabel(Feature f)`
`String` | `FeatureLabelRenderer.TypeLabelMaker.makeLabel(Feature f)`
`String` | `FeatureLabelRenderer.AnnotationLabelMaker.makeLabel(Feature feat)`
`void` | `BeadFeatureRenderer.renderBead(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderBead` should implement rendering for this bead type only.
`void` | `RectangularBeadRenderer.renderBead(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderBead` renders features as simple rectangle.
`void` | `RectangularImapRenderer.renderBead(Graphics2D g2, Feature f, SequenceRenderContext context)`
`abstract void` | `AbstractBeadRenderer.renderBead(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderBead` should be overridden by the concrete `BeadRenderer`.
`void` | `RoundRectangularBeadRenderer.renderBead(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderBead` renders features as a rectangle with rounded corners.
`void` | `EllipticalBeadRenderer.renderBead(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderBead` renders features as simple ellipse.
`void` | `CircularFeatureRenderer.renderFeature(Graphics2D g, Feature f, CircularRendererContext context)`
`void` | `SixFrameZiggyRenderer.renderFeature(Graphics2D g, Feature f, SequenceRenderContext context)`
`void` | `BasicImapRenderer.renderFeature(Graphics2D g2, Feature f, SequenceRenderContext context)`
`void` | `RectangularImapRenderer.renderFeature(Graphics2D g2, Feature f, SequenceRenderContext context)`
`void` | `BasicFeatureRenderer.renderFeature(Graphics2D g, Feature f, SequenceRenderContext src)`
`void` | `ZiggyFeatureRenderer.renderFeature(Graphics2D g, Feature f, SequenceRenderContext context)`
`void` | `FeatureLabelRenderer.renderFeature(Graphics2D g, Feature feat, SequenceRenderContext src)`
`void` | `FeatureRenderer.renderFeature(Graphics2D g2, Feature feat, SequenceRenderContext context)`
`void` | `ArrowedFeatureRenderer.renderFeature(Graphics2D g, Feature f, SequenceRenderContext src)`
`void` | `AbstractBeadRenderer.renderFeature(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderFeature` draws a feature using the supplied graphics context.
`void` | `TickFeatureRenderer.renderFeature(Graphics2D g, Feature f, SequenceRenderContext src)`
`void` | `StackedFeatureRenderer.renderFeature(Graphics2D g, Feature f, SequenceRenderContext src)`
`void` | `GlyphFeatureRenderer.renderFeature(Graphics2D g2, Feature f, SequenceRenderContext src)`
`void` | `ZiggyImapRenderer.renderFeature(Graphics2D g2, Feature f, SequenceRenderContext context)`
`void` | `ImageMapRenderer.renderImageMap(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderImageMap` renders the `Feature` as set of image map hotspots.
`void` | `BasicImapRenderer.renderImageMap(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderImageMap` writes a set of image map coordinates corresponding to the rectangle sections drawn by the renderer.
`void` | `RectangularImapRenderer.renderImageMap(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderImageMap` writes a set of image map coordinates corresponding to the rectangle drawn by the renderer.
`void` | `ZiggyImapRenderer.renderImageMap(Graphics2D g2, Feature f, SequenceRenderContext context)` `renderImageMap` writes a set of image map coordinates corresponding to the rectangle sections drawn by the renderer.

Uses of Feature in org.biojava.bio.molbio

Subinterfaces of Feature in org.biojava.bio.molbio
`interface` | `RestrictionSite` `RestrictionSite` represents the recognition site of a restriction enzyme.

Uses of Feature in org.biojava.bio.program.das

Methods in org.biojava.bio.program.das that return Feature
`Feature` | `DASSequence.createFeature(Feature.Template temp)`
`Feature` | `DASSequence.realizeFeature(FeatureHolder dest, Feature.Template temp)`

Methods in org.biojava.bio.program.das with parameters of type Feature
`boolean` | `DASSequence.containsFeature(Feature f)`
`void` | `DASSequence.removeFeature(Feature f)`

Uses of Feature in org.biojava.bio.program.gff

Methods in org.biojava.bio.program.gff with parameters of type Feature
`protected SimpleGFFRecord` | `SequencesAsGFF.createGFFRecord(Feature feature, String id)` Internal method to create a GFFRecord from an individual Feature.
`protected void` | `SequencesAsGFF.doProcessFeature(Feature feature, GFFDocumentHandler handler, String id)` Internal method to process an individual Feature.

Uses of Feature in org.biojava.bio.program.xff

Methods in org.biojava.bio.program.xff with parameters of type Feature
`String` | `XFFHelper.getFeatureID(Feature f)`
`String` | `BasicXFFHelper.getFeatureID(Feature f)`
`void` | `XFFHelper.writeDetails(XMLWriter xw, Feature f)`
`void` | `BasicXFFHelper.writeDetails(XMLWriter xw, Feature f)`
`void` | `PropertyWriter.writeDetails(XMLWriter xw, Feature f)`

Uses of Feature in org.biojava.bio.seq

Subinterfaces of Feature in org.biojava.bio.seq
`interface` | `ComponentFeature` Feature which represents a component in an assembly (contig).
`interface` | `FramedFeature` Title: FramedFeature.
`interface` | `RemoteFeature` A feature that indicates that there is some remote feature that can't be represented entirely on a single Sequence.
`interface` | `StrandedFeature` Adds the concept of 'strand' to features.

Methods in org.biojava.bio.seq that return Feature
`Feature` | `SimpleAssembly.createFeature(Feature.Template temp)`
`Feature` | `CircularView.createFeature(Feature.Template template)` Over rides ViewSequence to allow the use of locations that have coordinates outside of the sequence length (which are needed to describe locations that overlap the origin of a circular sequence).
`Feature` | `AbstractFeatureHolder.createFeature(Feature.Template temp)`
`Feature` | `NewSimpleAssembly.createFeature(Feature.Template temp)`
`Feature` | `LazyFeatureHolder.createFeature(Feature.Template template)`
`Feature` | `FeatureHolder.createFeature(Feature.Template ft)` Create a new Feature, and add it to this FeatureHolder.
`Feature` | `FeatureHolder.EmptyFeatureHolder.createFeature(Feature.Template f)`
`Feature` | `FeatureFilter.ByFeature.getFeature()`
`Feature` | `RemoteFeature.getRemoteFeature()` Retrieve the Feature on some assembly Sequence that can represent this RemoteFeature properly.
`Feature` | `SimpleAssembly.realizeFeature(FeatureHolder fh, Feature.Template temp)`
`Feature` | `NewSimpleAssembly.realizeFeature(FeatureHolder fh, Feature.Template temp)`
`Feature` | `RealizingFeatureHolder.realizeFeature(FeatureHolder parent, Feature.Template template)` Realize a feature template.
`Feature` | `SimpleFeatureRealizer.realizeFeature(Sequence seq, FeatureHolder parent, Feature.Template temp)`
`Feature` | `FeatureRealizer.realizeFeature(Sequence seq, FeatureHolder parent, Feature.Template template)` Install a feature on the specified sequence.
`Feature` | `RemoteFeature.Resolver.resolve(RemoteFeature rFeat)` Resolve rFeat.

Methods in org.biojava.bio.seq with parameters of type Feature
`boolean` | `FeatureFilter.accept(Feature f)` This method determines whether a feature is to be accepted.
`boolean` | `FeatureFilter.Not.accept(Feature f)`
`boolean` | `FeatureFilter.And.accept(Feature f)`
`boolean` | `FeatureFilter.Or.accept(Feature f)`
`boolean` | `FeatureFilter.ByType.accept(Feature f)` Returns true if the feature has a matching type property.
`boolean` | `FeatureFilter.BySource.accept(Feature f)`
`boolean` | `FeatureFilter.ByClass.accept(Feature f)`
`boolean` | `FeatureFilter.StrandFilter.accept(Feature f)` Accept the Feature if it is an instance of StrandedFeature and matches the value of getStrand().
`boolean` | `FeatureFilter.BySequenceName.accept(Feature f)`
`boolean` | `FeatureFilter.ContainedByLocation.accept(Feature f)` Returns true if the feature is within this filter's location.
`boolean` | `FeatureFilter.OverlapsLocation.accept(Feature f)` Returns true if the feature overlaps this filter's location.
`boolean` | `FeatureFilter.ShadowOverlapsLocation.accept(Feature f)` Returns true if the feature overlaps this filter's location.
`boolean` | `FeatureFilter.ShadowContainedByLocation.accept(Feature f)` Returns true if the feature is within this filter's location.
`boolean` | `FeatureFilter.ByAnnotationType.accept(Feature f)`
`boolean` | `FeatureFilter.ByParent.accept(Feature f)`
`boolean` | `FeatureFilter.ByAncestor.accept(Feature f)`
`boolean` | `FeatureFilter.OnlyChildren.accept(Feature f)`
`boolean` | `FeatureFilter.OnlyDescendants.accept(Feature f)`
`boolean` | `FeatureFilter.ByChild.accept(Feature f)`
`boolean` | `FeatureFilter.ByDescendant.accept(Feature f)`
`boolean` | `FeatureFilter.FrameFilter.accept(Feature f)` Accept the Feature if it is an instance of FramedFeature and matches the value of getFrame().
`boolean` | `FeatureFilter.ByPairwiseScore.accept(Feature f)` Accept a Feature if it is an instance of SimilarityPairFeature and its score is <= filter's minimum score and >= filter's maximum score.
`boolean` | `FeatureFilter.ByComponentName.accept(Feature f)`
`boolean` | `FeatureFilter.ByFeature.accept(Feature f)`
`void` | `SimpleFeatureHolder.addFeature(Feature f)` Add a feature to the featureholder
`boolean` | `SimpleAssembly.containsFeature(Feature f)`
`boolean` | `SimpleFeatureHolder.containsFeature(Feature f)`
`boolean` | `NewSimpleAssembly.containsFeature(Feature f)`
`boolean` | `LazyFeatureHolder.containsFeature(Feature f)`
`boolean` | `MergeFeatureHolder.containsFeature(Feature f)`
`boolean` | `FeatureHolder.containsFeature(Feature f)` Check if the feature is present in this holder.
`boolean` | `FeatureHolder.EmptyFeatureHolder.containsFeature(Feature f)`
`void` | `SimpleAssembly.removeFeature(Feature f)`
`void` | `AbstractFeatureHolder.removeFeature(Feature f)`
`void` | `SimpleFeatureHolder.removeFeature(Feature f)`
`void` | `NewSimpleAssembly.removeFeature(Feature f)`
`void` | `LazyFeatureHolder.removeFeature(Feature f)`
`void` | `FeatureHolder.removeFeature(Feature f)` Remove a feature from this FeatureHolder.
`void` | `FeatureHolder.EmptyFeatureHolder.removeFeature(Feature f)`

Constructors in org.biojava.bio.seq with parameters of type Feature
`FeatureFilter.ByFeature(Feature f)`

Uses of Feature in org.biojava.bio.seq.homol

Subinterfaces of Feature in org.biojava.bio.seq.homol
`interface` | `HomologyFeature`
`interface` | `SimilarityPairFeature` `SimilarityPairFeature` describes a pairwise similarity between two nucleotide sequences (as it extends `StrandedFeature`).

Uses of Feature in org.biojava.bio.seq.impl

Classes in org.biojava.bio.seq.impl that implement Feature
`class` | `SimpleFeature` A no-frills implementation of a feature.
`class` | `SimpleFramedFeature` Title: SimpleFramedFeature.
`class` | `SimpleHomologyFeature`
`class` | `SimpleRemoteFeature` A no-frills implementation of a remote feature.
`class` | `SimpleRestrictionSite` `SimpleRestrictionSite` represents the recognition site of a restriction enzyme.
`class` | `SimpleSimilarityPairFeature` `SimpleSimilarityPairFeature` represents a similarity between a query sequence and a subject sequence as produced by a search program.
`class` | `SimpleStrandedFeature` A no-frills implementation of StrandedFeature.

Methods in org.biojava.bio.seq.impl that return Feature
`Feature` | `SimpleGappedSequence.createFeature(Feature.Template templ)`
`Feature` | `RevCompSequence.createFeature(Feature.Template ft)` createFeature() will call createFeature() on the underlying Sequence.
`Feature` | `SimpleSequence.createFeature(Feature.Template template)`
`Feature` | `SimpleFeature.createFeature(Feature.Template temp)`
`Feature` | `DummySequence.createFeature(Feature.Template template)`
`Feature` | `ViewSequence.createFeature(Feature.Template template)`
`Feature` | `SubSequence.createFeature(Feature.Template templ)`
`Feature` | `LazyFilterFeatureHolder.createFeature(Feature.Template temp)`
`Feature` | `SimpleSequence.createFeature(FeatureHolder fh, Feature.Template template)` Deprecated. Please use new 1-arg createFeature instead.
`Feature` | `RevCompSequence.getFeatureFromOriginal(Feature f)` getFeatureFromOriginal() Since you can not create a feature on a projectedFeature at this time, I am including this method so that you can get the corresponding feature from the original sequence.
`Feature` | `SimpleRemoteFeature.getRemoteFeature()`
`Feature` | `SubSequence.SubProjectedFeatureContext.projectFeature(Feature origFeat)`
`Feature` | `SimpleSequence.realizeFeature(FeatureHolder parent, Feature.Template template)`
`Feature` | `SimpleFeature.realizeFeature(FeatureHolder fh, Feature.Template templ)`
`Feature` | `ViewSequence.realizeFeature(FeatureHolder parent, Feature.Template template)`
`Feature` | `SimpleRemoteFeature.DBResolver.resolve(RemoteFeature rFeat)`
`Feature` | `SubSequence.SubProjectedFeatureContext.revertFeature(Feature projFeat)`

Methods in org.biojava.bio.seq.impl with parameters of type Feature
`boolean` | `SimpleGappedSequence.containsFeature(Feature f)`
`boolean` | `RevCompSequence.containsFeature(Feature f)` containsFeature() will return true if this seq contains the feature in question, or if if the original (non reverse complement) sequence contains the feature;
`boolean` | `SimpleSequence.containsFeature(Feature f)`
`boolean` | `SimpleFeature.containsFeature(Feature f)`
`boolean` | `DummySequence.containsFeature(Feature feature)`
`boolean` | `ViewSequence.containsFeature(Feature f)`
`boolean` | `SubSequence.containsFeature(Feature f)`
`boolean` | `LazyFilterFeatureHolder.containsFeature(Feature f)`
`Feature` | `RevCompSequence.getFeatureFromOriginal(Feature f)` getFeatureFromOriginal() Since you can not create a feature on a projectedFeature at this time, I am including this method so that you can get the corresponding feature from the original sequence.
`static Feature.Template` | `TemplateUtils.instantiateTemplate(Feature feat)` This attempts to divine the 'best' template class for a feature and return a new instance readly for pupulating.
`static Feature.Template` | `TemplateUtils.makeTemplate(Feature feat)`
`static void` | `TemplateUtils.populate(Feature.Template templ, Feature feat)` This attempts to populate the fields of a template using the publically accessible information in a feature.
`FeatureHolder` | `SubSequence.SubProjectedFeatureContext.projectChildFeatures(Feature f, FeatureHolder parent)`
`Feature` | `SubSequence.SubProjectedFeatureContext.projectFeature(Feature origFeat)`
`void` | `SimpleGappedSequence.removeFeature(Feature f)`
`void` | `RevCompSequence.removeFeature(Feature f)`
`void` | `SimpleSequence.removeFeature(Feature f)` Remove a feature attached to this sequence.
`void` | `SimpleFeature.removeFeature(Feature f)`
`void` | `DummySequence.removeFeature(Feature feature)`
`void` | `ViewSequence.removeFeature(Feature f)` Remove a feature from this sequence.
`void` | `SubSequence.removeFeature(Feature f)`
`void` | `LazyFilterFeatureHolder.removeFeature(Feature f)`
`Feature` | `SubSequence.SubProjectedFeatureContext.revertFeature(Feature projFeat)`

Uses of Feature in org.biojava.bio.seq.io

Methods in org.biojava.bio.seq.io with parameters of type Feature
`String` | `SwissprotFileFormer.formatLocation(Feature theFeature)` Deprecated. Creates a string representation of the location of a feature
`String` | `SeqFileFormer.formatLocation(Feature theFeature)` Deprecated. Formats the location of a feature.

Uses of Feature in org.biojava.bio.seq.io.agave

Methods in org.biojava.bio.seq.io.agave with parameters of type Feature
`protected void` | `StAXFeatureHandler.realizeSubFeatures(Feature feature)` recursively attach children features to parent

Uses of Feature in org.biojava.bio.seq.projection

Classes in org.biojava.bio.seq.projection that implement Feature
`class` | `ProjectedFeature` Internal class used by ProjectionEngine to wrap Feature objects.

Methods in org.biojava.bio.seq.projection that return Feature
`Feature` | `ProjectedFeature.createFeature(Feature.Template temp)`
`Feature` | `ReparentContext.createFeature(Feature.Template projTempl)`
`Feature` | `ProjectionContext.createFeature(Feature.Template projTempl)` Create a projected feature with properties matching the template.
`Feature` | `ProjectedFeatureHolder.createFeature(Feature.Template templ)`
`Feature` | `ReparentContext.createFeature(Feature f, Feature.Template projTempl)`
`Feature` | `ProjectionContext.createFeature(Feature projParent, Feature.Template projTempl)` Create a new projected feature.
`Feature` | `Projection.getViewedFeature()`
`Feature` | `ProjectedFeature.getViewedFeature()`
`Feature` | `ReparentContext.projectFeature(Feature feat)` Create a single projected feature using the rules of this `ProjectedFeatureHolder`.
`Feature` | `ProjectionContext.projectFeature(Feature feat)` Project a single feature.
`Feature` | `ProjectionEngine.projectFeature(Feature f, ProjectionContext ctx)` Return a projection of Feature `f` into the system defined by a given ProjectionContext.
`Feature` | `ReparentContext.revertFeature(Feature feat)`
`Feature` | `ProjectionContext.revertFeature(Feature projFeat)` Unproject a feature.

Methods in org.biojava.bio.seq.projection with parameters of type Feature
`void` | `ReparentContext.addChangeListener(Feature f, ChangeListener cl, ChangeType ct)`
`void` | `ProjectionContext.addChangeListener(Feature projFeat, ChangeListener cl, ChangeType ct)` Add a ChangeListener to a projected feature.
`boolean` | `ProjectedFeature.containsFeature(Feature f)`
`boolean` | `ProjectedFeatureHolder.containsFeature(Feature f)`
`Feature` | `ReparentContext.createFeature(Feature f, Feature.Template projTempl)`
`Feature` | `ProjectionContext.createFeature(Feature projParent, Feature.Template projTempl)` Create a new projected feature.
`FeatureHolder` | `ReparentContext.getParent(Feature f)`
`FeatureHolder` | `ProjectionContext.getParent(Feature projFeat)`
`FeatureFilter` | `ReparentContext.getSchema(Feature f)`
`Sequence` | `ReparentContext.getSequence(Feature f)`
`Sequence` | `ProjectionContext.getSequence(Feature projFeat)` Get the sequence for a feature.
`FeatureHolder` | `ReparentContext.projectChildFeatures(Feature f, FeatureHolder parent)`
`FeatureHolder` | `ProjectionContext.projectChildFeatures(Feature feature, FeatureHolder parent)` Project all features that are children of feature so that they become children of parent.
`Feature` | `ReparentContext.projectFeature(Feature feat)` Create a single projected feature using the rules of this `ProjectedFeatureHolder`.
`Feature` | `ProjectionContext.projectFeature(Feature feat)` Project a single feature.
`Feature` | `ProjectionEngine.projectFeature(Feature f, ProjectionContext ctx)` Return a projection of Feature `f` into the system defined by a given ProjectionContext.
`void` | `ReparentContext.removeChangeListener(Feature f, ChangeListener cl, ChangeType ct)`
`void` | `ProjectionContext.removeChangeListener(Feature projFeat, ChangeListener cl, ChangeType ct)` Remove a ChangeListener from a projected feature.
`void` | `ProjectedFeature.removeFeature(Feature f)`
`void` | `ReparentContext.removeFeature(Feature dyingChild)`
`void` | `ProjectionContext.removeFeature(Feature dyingChild)` Remove the dying child.
`void` | `ProjectedFeatureHolder.removeFeature(Feature dyingChild)`
`void` | `ReparentContext.removeFeature(Feature f, Feature f2)`
`void` | `ProjectionContext.removeFeature(Feature projParent, Feature dyingChild)` Remove the dying child.
`Feature` | `ReparentContext.revertFeature(Feature feat)`
`Feature` | `ProjectionContext.revertFeature(Feature projFeat)` Unproject a feature.

Constructors in org.biojava.bio.seq.projection with parameters of type Feature
`ProjectedFeature(Feature f, ProjectionContext ctx)`

Uses of Feature in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql with parameters of type Feature
`boolean` | `BioSQLFeatureFilter.Not.accept(Feature f)`
`boolean` | `BioSQLFeatureFilter.And.accept(Feature f)`
`boolean` | `BioSQLFeatureFilter.Or.accept(Feature f)`
`boolean` | `BioSQLFeatureFilter.ByName.accept(Feature f)` Returns true if the feature has a matching type property.
`boolean` | `BioSQLFeatureFilter.ByRank.accept(Feature f)` Returns true if the feature has a matching type property.
`boolean` | `BioSQLFeatureFilter.ByTypeTerm.accept(Feature f)` Returns true if the feature has a matching type property.
`boolean` | `BioSQLFeatureFilter.BySourceTerm.accept(Feature f)` Returns true if the feature has a matching source property.
`boolean` | `BioSQLFeatureFilter.ByTypeTermName.accept(Feature f)` Returns true if the feature has a matching type property.
`boolean` | `BioSQLFeatureFilter.BySourceTermName.accept(Feature f)` Returns true if the feature has a matching source property.
`boolean` | `BioSQLFeatureFilter.BySequenceName.accept(Feature f)`
`boolean` | `BioSQLFeatureFilter.ContainedByRichLocation.accept(Feature f)` Returns true if the feature is within this filter's location.
`boolean` | `BioSQLFeatureFilter.ByStrand.accept(Feature f)` Returns true if the feature overlaps this filter's location.
`boolean` | `BioSQLFeatureFilter.OverlapsRichLocation.accept(Feature f)` Returns true if the feature overlaps this filter's location.
`boolean` | `BioSQLFeatureFilter.ByNote.accept(Feature f)`
`boolean` | `BioSQLFeatureFilter.ByNoteTermOnly.accept(Feature f)`
`boolean` | `BioSQLAcceptAllFilter.accept(Feature f)`
`boolean` | `BioSQLAcceptNoneFilter.accept(Feature f)`

Uses of Feature in org.biojavax.bio.seq

Subinterfaces of Feature in org.biojavax.bio.seq
`interface` | `RichFeature` Represents a feature that can be given name and rank and be moved from one sequence to another.

Classes in org.biojavax.bio.seq that implement Feature
`class` | `SimpleRichFeature` A simple implementation of RichFeature.

Methods in org.biojavax.bio.seq that return Feature
`Feature` | `SimpleRichFeature.createFeature(Feature.Template ft)` Create a new Feature, and add it to this FeatureHolder.
`Feature` | `ThinRichSequence.createFeature(Feature.Template ft)` Create a new Feature, and add it to this FeatureHolder.

Methods in org.biojavax.bio.seq with parameters of type Feature
`boolean` | `SimpleRichFeature.containsFeature(Feature f)` Check if the feature is present in this holder.
`boolean` | `ThinRichSequence.containsFeature(Feature f)` Check if the feature is present in this holder.
`static RichFeature` | `RichFeature.Tools.enrich(Feature f)` Takes a normal Feature and attempts to convert it into a RichFeature.
`void` | `SimpleRichFeature.removeFeature(Feature f)` Remove a feature from this FeatureHolder.
`void` | `ThinRichSequence.removeFeature(Feature f)` Remove a feature from this FeatureHolder.

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