SequenceDBWrapper (BioJava-1.5-beta API)
Keywords: org.biojava.bio.seq.db.SequenceDBWrapper class

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD

## org.biojava.bio.seq.db
Class SequenceDBWrapper

    java.lang.Object
      org.biojava.utils.AbstractChangeable
          org.biojava.bio.seq.db.AbstractSequenceDB
              org.biojava.bio.seq.db.SequenceDBWrapper

All Implemented Interfaces:
  Serializable, SequenceDB, SequenceDBLite, Changeable

Direct Known Subclasses:
  CachingSequenceDB, SubSequenceDB, ViewingSequenceDB

    public abstract class SequenceDBWrapper

extends AbstractSequenceDB
implements Serializable

An abstract implementation of SequenceDB that wraps up another database.

Author:
  Matthew Pocock
See Also:
  Serialized Form

Nested Class Summary
`protected class` | `SequenceDBWrapper.SequencesForwarder`

Field Summary

Fields inherited from interface org.biojava.bio.seq.db.SequenceDBLite
`SEQUENCES`

Constructor Summary
`SequenceDBWrapper(SequenceDB parent)`

Method Summary
`protected ChangeSupport` | `getChangeSupport(ChangeType ct)` Called to retrieve the ChangeSupport for this object.
`SequenceDB` | `getParent()` Return the parent SequenceDB.

Methods inherited from class org.biojava.bio.seq.db.AbstractSequenceDB
`addSequence, filter, removeSequence, sequenceIterator`

Methods inherited from class org.biojava.utils.AbstractChangeable
`addChangeListener, addChangeListener, generateChangeSupport, hasListeners, hasListeners, isUnchanging, removeChangeListener, removeChangeListener`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Methods inherited from interface org.biojava.bio.seq.db.SequenceDB
`ids`

Methods inherited from interface org.biojava.bio.seq.db.SequenceDBLite
`getName, getSequence`

Methods inherited from interface org.biojava.utils.Changeable
`addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener`

Constructor Detail

### SequenceDBWrapper

    public SequenceDBWrapper(SequenceDB parent)

Method Detail

### getChangeSupport

    protected ChangeSupport getChangeSupport(ChangeType ct)

  Description copied from class: `AbstractChangeable`
  Called to retrieve the ChangeSupport for this object.

  Your implementation of this method should have the following structure: ``

       ChangeSupport cs = super.getChangeSupport(ct);

       if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) {
         someForwarder = new ChangeForwarder(...

         this.stateVariable.addChangeListener(someForwarder, VariableInterface.AChange);
       }

       return cs;

  It is usual for the forwarding listeners (someForwarder in this example) to be transient and lazily instantiated. Be sure to register & unregister the forwarder in the code that does the ChangeEvent handling in setter methods.

  Overrides:
    `getChangeSupport` in class `AbstractChangeable`

### getParent

    public SequenceDB getParent()

  Return the parent SequenceDB.

  Returns:
    the parent SequenceDB

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV CLASS NEXT CLASS | FRAMES NO FRAMES
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD