 FASTA searches a protein or DNA sequence data bank
 version 3.3t06 June 2, 2000
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

NMA0159.aa: 425 aa
 >NMA0159
 vs  files/fp_demo.db library
searching files/fp_demo.db library

       opt      E()
< 20     0     0:
  22     0     0:           one = represents 4 library sequences
  24     0     0:
  26     0     0:
  28     0     0:
  30     5     3:*=
  32    10    11:==*
  34    34    30:=======*=
  36    65    61:===============*=
  38   125   101:=========================*======
  40   140   141:===================================*
  42   163   173:=========================================  *
  44   207   190:===============================================*====
  46   180   194:=============================================   *
  48   167   186:==========================================    *
  50   158   169:========================================  *
  52   155   149:=====================================*=
  54   107   127:===========================    *
  56   112   106:==========================*=
  58    78    87:==================== *
  60    68    71:=================*
  62    70    57:==============*===
  64    42    45:===========*
  66    40    36:========*=
  68    27    28:======*
  70    28    22:=====*=
  72    18    17:====*
  74    16    13:===*
  76    13    10:==*=
  78    13     8:=*==
  80     5     6:=*
  82     2     5:=*
  84     5     4:*=
  86     3     3:*
  88     1     2:*          inset = represents 1 library sequences
  90     1     2:*
  92     1     1:*         :*
  94     0     1:*         :*
  96     0     1:*         :*
  98     1     1:*         :*
 100     0     0:          *
 102     1     0:=         *=
 104     0     0:          *
 106     0     0:          *
 108     0     0:          *
 110     0     0:          *
 112     0     0:          *
 114     0     0:          *
 116     0     0:          *
 118     0     0:          *
>120     4     0:=         *====
 585987 residues in  2065 sequences
  Expectation_n fit: rho(ln(x))= 7.0580+/-0.00388; mu= 0.0108+/- 0.216
 mean_var=85.1078+/-17.948, 0's: 0 Z-trim: 1  B-trim: 192 in 2/38
 Lambda= 0.1390
 Kolmogorov-Smirnov  statistic: 0.0185 (N=29) at  44

FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, gap-pen: -12/ -2, width:  16
 Scan time:  3.240
The best scores are:                                       opt bits E(2064)
NMA0159 putative two-component trancriptional reg  ( 425) 2739  559 1.9e-160
NMA1805 putative two component response regulator  ( 155)  190   48 5.5e-07
NMA0798 putative two-component system regulator 7  ( 225)  179   46 3.7e-06
NMA1419 putative two-component system response re  ( 218)  130   36  0.0032
rpsC 30S ribosomal protein S3 111223:111915 rever  ( 230)   88   27     1.2
fis factor-for-inversion-stimulation protein 1538  (  79)   76   25     2.2
hemK HemK protein 341270:342091 forward MW:30153   ( 273)   79   26     4.8
NMA0988 hypothetical protein NMA0988 950636:95137  ( 246)   77   25     5.8
hemL putative glutamate-1-semialdehyde 2,1-aminom  ( 427)   77   25     9.9

>>>NMA0159.aa, 425 aa vs files/fp_demo.db library
; mp_name: fasta33
; mp_ver: 33t06
; mp_argv: fasta33 -m 10 NMA0159.aa files/fp_demo.db
; pg_name: FASTA
; pg_ver: 3.36 June 2000
; pg_matrix: BL50 (15:-5)
; pg_gap-pen: -12 -2
; pg_ktup: 2
; pg_optcut: 25
; pg_cgap: 37
; mp_extrap: 60000 2064
; mp_stats:  Expectation_n fit: rho(ln(x))= 7.0580+/-0.00388; mu= 0.0108+/- 0.216  mean_var=85.1078+/-17.948, 0's: 0 Z-trim: 1  B-trim: 192 in 2/38  Lambda= 0.1390
; mp_KS: 0.0185 (N=29) at  44
>>NMA0159 putative two-component trancriptional regulator 143485:144762 reverse MW:46361
; fa_frame: f
; fa_initn: 2739
; fa_init1: 2739
; fa_opt: 2739
; fa_z-score: 2972.7
; fa_bits: 559.1
; fa_expect: 1.9e-160
; sw_score: 2739
; sw_ident: 1.000
; sw_gident: 1.000
; sw_overlap: 425
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 1
; al_stop: 425
; al_display_start: 1
MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRHQARPAM
VLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGAL
DFLEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVG
AAVKCASPVLLTGEAGSPFETVARYFHKNGTPWVSPARVEYLINMPMELL
QKAEGGVLYVGDIAQYSRNIQAGIAFIVGKAEHRRVRVVASGSRAAGSDG
IACEEKLAELLSESVVRIPPLRMQHEDIPFLIQGITCNVAESQKIAPASF
SEDALAALTRYEWPGNFDQLSSVVATLLLEADGQEIGAGAVSSLLGQNVP
AEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSKVAQKVGLE
RTHLYRKLKQLGIGVSRRAGEKTEE
>NMA0159 ..
; sq_len: 425
; sq_type: p
; al_start: 1
; al_stop: 425
; al_display_start: 1
MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRHQARPAM
VLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIGAL
DFLEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVG
AAVKCASPVLLTGEAGSPFETVARYFHKNGTPWVSPARVEYLINMPMELL
QKAEGGVLYVGDIAQYSRNIQAGIAFIVGKAEHRRVRVVASGSRAAGSDG
IACEEKLAELLSESVVRIPPLRMQHEDIPFLIQGITCNVAESQKIAPASF
SEDALAALTRYEWPGNFDQLSSVVATLLLEADGQEIGAGAVSSLLGQNVP
AEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSKVAQKVGLE
RTHLYRKLKQLGIGVSRRAGEKTEE
; al_cons:
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
:::::::::::::::::::::::::
>>NMA1805 putative two component response regulator 1750266:1750733 forward MW:17512
; fa_frame: f
; fa_initn: 155
; fa_init1: 117
; fa_opt: 190
; fa_z-score: 217.4
; fa_bits: 47.8
; fa_expect: 5.5e-07
; sw_score: 190
; sw_ident: 0.306
; sw_gident: 0.317
; sw_overlap: 124
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 6
; al_stop: 128
; al_display_start: 1
--MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRHQARP
AMVLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHASIDTAVEATKIG
ALDFLEKPISLQKLLSAVE-NALKYGAAQTETGPVFDKLGNSAAIQEMNR
EVGAAVKCASPVLLTGEAGSPFETVARYFH
>NMA1805 ..
; sq_len: 155
; sq_type: p
; al_start: 8
; al_stop: 128
; al_display_start: 1
MTELQHPVLVVDDETDILDLMEMTLMKMGLRVHTASGVAEAKNKLDSQRY
SLVLTDMRMPDGSGLEVVQH-INSRLLDTPVAVITAFGNADQAQEALRCG
AFD--PDTMQIQDYLDQIERDIIEQTLKQTEGNRTQAAKRLGISFRSMRY
RMERLNIG
; al_cons:
       .:.::::  : ::.   :.  :  :  : .. ::..   . : 
..:: :. ::: .:. ....- ..  :. ::..... .. : : :: . :
:.:--   ...:  :. .:-. ..    :::
>>NMA0798 putative two-component system regulator 783700:784377 reverse MW:24779
; fa_frame: f
; fa_initn: 130
; fa_init1:  99
; fa_opt: 179
; fa_z-score: 202.6
; fa_bits: 45.6
; fa_expect: 3.7e-06
; sw_score: 179
; sw_ident: 0.249
; sw_gident: 0.257
; sw_overlap: 173
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 4
; al_stop: 175
; al_display_start: 1
MRSSDILIVDDEIGIRDLLSEILQDEGYSVALAENAEEARKLRHQARPAM
VLLDIWMPDCDGITLLKEWAKNGQLNMPVVMMSGHAS-IDTAVEATKIGA
LDFLEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREV
GAAVKCASPVLLTGEAGSPFETVARYFHKNGTPWVSPARVEYLINMPMEL
LQKAEGGVLYVGDIAQYSRNIQAGIAFIVGKAEHRRVRVV
>NMA0798 ..
; sq_len: 225
; sq_type: p
; al_start: 2
; al_stop: 169
; al_display_start: 1
--MSRVLLVDDDALLTELLTEYLSAEGLNVRSVPDGEAGVQEILSGQYDV
VVLDSMMPKMNGLDVLKNV--RARSTVPIIMLTAKGDDIDRII-GLEMGA
DDYVPKPCTPRELLARINAILRRAQHSGEQNNAPNSISVSDVVLYPAKR-
QASVK-DMPLELTSTEFNLLEVLMRHAGQVVSKETLSVEALDRKLAKFDR
SIDVHISSIRHKLGDASLIQTVRGLGYLFVKN
; al_cons:
   : .:.:::.  . .::.: :. :: .:  . ..: . .   ...  .
:.::  ::  .:. .::. -- .. ..:..:......-::  .-. ..::
 :.. :: . ..::. ..  :. .  . : . . .... : ..    ..-
 :.::-  :. ::.   . .:.. :.
>>NMA1419 putative two-component system response regulator 1317758:1318414 forward MW:23836
; fa_frame: f
; fa_initn:  37
; fa_init1:  37
; fa_opt: 130
; fa_z-score: 149.7
; fa_bits: 35.8
; fa_expect: 0.0032
; sw_score: 130
; sw_ident: 0.306
; sw_gident: 0.343
; sw_overlap: 121
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 6
; al_stop: 119
; al_display_start: 1
MRSSDILIVDDEI----GIRDLLSEILQDEGYSVALAENAEEARKLRHQA
R--PAMVLLDIWMPDCDGITLLKEWAK-NGQLNMPVVMMSGHASIDTAVE
ATKIGALDFLEKPISLQKLLSAVENALKYGAAQTETGPVFDKLGNSAAIQ
EMNREVGAAVKCASPVLLTGEAGSPFETVA
>NMA1419 ..
; sq_len: 218
; sq_type: p
; al_start: 5
; al_stop: 119
; al_display_start: 1
-MTIKIILIDDHTLFRSGIKALLS---RQHGFEV-IGEAADGLSGIKMIS
RLQPDVVLLDLDMPGMNGREALSQIISINPQ--QAVIMLTVSEDSDDLTE
CMRIGARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQP
AQGTQALSSLTPRELEILGYLAAGHSNKII
; al_cons:
     :...::. ----::. :::---...:. :-..: :.    ..  .
:--: .::::. ::  .:   :..  .-: :--. :.:..   . :  .:
  .:::  .: : :. . :: ....:
>>rpsC 30S ribosomal protein S3 111223:111915 reverse MW:25798
; fa_frame: f
; fa_initn:  36
; fa_init1:  36
; fa_opt:  88
; fa_z-score: 103.8
; fa_bits: 27.4
; fa_expect:    1.2
; sw_score: 90
; sw_ident: 0.258
; sw_gident: 0.301
; sw_overlap: 132
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 2
; al_stop: 124
; al_display_start: 1
-----------------------MRSSDI-LIVDDEIGIRDLLSEILQDE
GYS-VALAENAEEARKLRHQARPAMVLLDIWMPDCDGITLLKEWAKNGQL
NMPVVMMSGHASIDTA----VEATKI--GALDFLEKPISLQKLLS-AVEN
ALKYGAAQTETGPVFDKLGNSAAIQEMNREVGAAVKCASPVLLTGEAGSP
FETVARYFHKNGTPWVSPARVEYLINMPMELLQKAEGGVL
>rpsC ..
; sq_len: 230
; sq_type: p
; al_start: 25
; al_stop: 146
; al_display_start: 1
MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRQKLANA
SVGRVVIERPAKSARITIHSARPGVVI----GKKGEDIEVLK---RDLQV
LMGVPV---HVNIEEIRRPELDAQIIADGIAQQLEKRVQFRRAMKRAMQN
AMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRANVDYATSEAH
TTYGVLGLKVWVYTEGNIKSSKPEHESKQRKAGRRNAAAN
; al_cons:
                        .:.:.- .. ..: .:. : . : . 
. .-:.. . :. ::   :.:::..:.----    . : .::---.. :.
 : : .---:..:.  ----..:  :--:  . ::: ..... ..-:..:
:.. ::
>>fis factor-for-inversion-stimulation protein 1538460:1538699 reverse MW:8937
; fa_frame: f
; fa_initn:  63
; fa_init1:  63
; fa_opt:  76
; fa_z-score: 98.9
; fa_bits: 24.9
; fa_expect:    2.2
; sw_score: 76
; sw_ident: 0.366
; sw_gident: 0.366
; sw_overlap: 41
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 373
; al_stop: 413
; al_display_start: 343
SLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHIAQEGQNMSK
VAQKVGLERTHLYRKLKQLGIGVSRRAGEKTEE
>fis ..
; sq_len: 79
; sq_type: p
; al_start: 38
; al_stop: 78
; al_display_start: 8
ISQCIRQNLEQYFKDLNGTEPCGVYDMVLHQVEKPLLVCVMEQCGGNQSK
ASVMLGLNRNTLRKKLIQHGLL
; al_cons:
                              .::.  .   . : : :.::
..  .::.:. : .:: : :.
>>hemK HemK protein 341270:342091 forward MW:30153
; fa_frame: f
; fa_initn:  44
; fa_init1:  44
; fa_opt:  79
; fa_z-score: 92.7
; fa_bits: 25.6
; fa_expect:    4.8
; sw_score: 79
; sw_ident: 0.200
; sw_gident: 0.211
; sw_overlap: 95
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 269
; al_stop: 358
; al_display_start: 239
VASGSRAAGSDGIACEEKLAELLSESVVRIPPLRMQHEDIPFLIQGITCN
VAESQKIAPASFSEDALAALTRYEWPGNFDQLSSVVATLLLEA--DGQEI
GAG---AVSSLLGQNVPAEGAEDMVGGFNFNLPLRELREEVERRYFEYHI
AQEGQNMSKVAQKVGLERTHLYRKLKQLGI
>hemK ..
; sq_len: 273
; sq_type: p
; al_start: 79
; al_stop: 173
; al_display_start: 49
DRLAQRRLNGEPVAYILGAREFYGRRFTVNPSVLIPRPETEHLVEAVLAR
LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL
GARVEFAYGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLSQGDLRFEPQI
ALTDFSDGLSCIRTLAQGAPDRLAEGGFLL
; al_cons:
                              : . . . .   :....   
. :. ..   . .  :.:. .  : :  : . :..    :  :--.. ..
:: ---: .: .  ..:.::  :..
>>NMA0988 hypothetical protein NMA0988 950636:951376 forward MW:27292
; fa_frame: f
; fa_initn:  57
; fa_init1:  57
; fa_opt:  77
; fa_z-score: 91.3
; fa_bits: 25.2
; fa_expect:    5.8
; sw_score: 77
; sw_ident: 0.247
; sw_gident: 0.264
; sw_overlap: 77
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 144
; al_stop: 220
; al_display_start: 114
SAVENALKYGAAQTETGPVFDKLGNSAAIQEMNREVGAAVKCASPVLLTG
EAGSPFETVARYFHKNGTPWVSPARVEYLINMPMELLQKAEGGVLYVGDI
AQYSRNIQAGIAFIVGKAEHRRVRVVASGSRAAGSDGIACEEKLAELLSE
SVVRIPPLRMQHEDIPFLIQGITCNVAESQ
>NMA0988 ..
; sq_len: 246
; sq_type: p
; al_start: 15
; al_stop: 86
; al_display_start: 1
----------------MLIVRPSGRAKDDVETCRRAGWQAEVLSPIEIEA
DAAGLELLSEQYARADAVFWVSPTAVETAV--PY--LNLSDGIKMHIS-V
GQGSRRVLERCLGRTVIAPEDGNDSEAVLRLTVWNSLPEGARVLFVRGHG
GRDFLMNALQEKGFRTEVAEVYFRRHKPLN
; al_cons:
                              :  :..:  ..  ::. . .
.:..      .: . ... ::::. ::  .--:.--:. ..:  ....-.
.: :: .
>>hemL putative glutamate-1-semialdehyde 2,1-aminomutase 565358:566641 forward MW:45269
; fa_frame: f
; fa_initn:  48
; fa_init1:  48
; fa_opt:  77
; fa_z-score: 87.1
; fa_bits: 25.2
; fa_expect:    9.9
; sw_score: 77
; sw_ident: 0.233
; sw_gident: 0.238
; sw_overlap: 86
>NMA0159 ..
; sq_len: 425
; sq_offset: 1
; sq_type: p
; al_start: 185
; al_stop: 270
; al_display_start: 155
CASPVLLTGEAGSPFETVARYFHKNGTPWVSPARVEYLINMPMELLQKAE
GGVLYVGDIAQYSRNIQAGIAFIVGKAEHRRVRVVASGSRAAGSDGIACE
EKLAELLSESVVRIPPLRMQHEDIPFLIQGITCNVAESQKIAPASFSEDA
LAALTRYEWPGNFDQLSSVVATLLLEADGQ
>hemL ..
; sq_len: 427
; sq_type: p
; al_start: 21
; al_stop: 104
; al_display_start: 1
----------MNRNEILFDRAKAVIPGGVNSPVRAFGSVGGVPRFIKKAE
GAYVWDENGTRYTDYVGSWGPAIVGHAHPEVIEAVREAALGGLSFGAPTE
GEIA--IAEEIAKIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKF
EGCYHGHSDSLLVKAGSGLLTFGNPSSAGV
; al_cons:
                              ::.:.   ..   ....:::
:. ..  . ..:.  . .    :::.:. . ...:  .. .. : :   :
 ..:--..: ...: :
>>><<<


425 residues in 1 query   sequences
585987 residues in 2065 library sequences
 Scomplib [version 3.3t06 June 2, 2000]
 start: Sat Feb 10 21:11:46 2001 done: Sat Feb 10 21:11:50 2001
 Scan time:  3.240 Display time:  0.460

Function used was FASTA
 FASTA searches a protein or DNA sequence data bank
 version 3.3t06 June 2, 2000
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

NMA0305.aa: 328 aa
 >NMA0305
 vs  files/fp_demo.db library
searching files/fp_demo.db library

       opt      E()
< 20     0     0:
  22     0     0:           one = represents 4 library sequences
  24     0     0:
  26     0     0:
  28     1     0:=
  30     4     3:*
  32    14    11:==*=
  34    21    30:====== *
  36    59    61:===============*
  38   120   101:=========================*====
  40   164   141:===================================*=====
  42   198   173:===========================================*======
  44   188   190:===============================================*
  46   172   194:===========================================     *
  48   181   186:==============================================*
  50   162   169:========================================= *
  52   139   149:===================================  *
  54   119   127:============================== *
  56   109   106:==========================*=
  58    87    87:=====================*
  60    59    71:===============  *
  62    54    57:==============*
  64    45    45:===========*
  66    40    36:========*=
  68    32    28:======*=
  70    23    22:=====*
  72    12    17:=== *
  74    13    13:===*
  76    13    10:==*=
  78    10     8:=*=
  80     3     6:=*
  82     3     5:=*
  84     7     4:*=
  86     3     3:*
  88     4     2:*          inset = represents 1 library sequences
  90     1     2:*
  92     1     1:*         :*
  94     1     1:*         :*
  96     0     1:*         :*
  98     1     1:*         :*
 100     0     0:          *
 102     0     0:          *
 104     0     0:          *
 106     0     0:          *
 108     0     0:          *
 110     0     0:          *
 112     0     0:          *
 114     0     0:          *
 116     0     0:          *
 118     0     0:          *
>120     2     0:=         *==
 585987 residues in  2065 sequences
  Expectation_n fit: rho(ln(x))= 7.0705+/-0.00402; mu= -0.6966+/- 0.221
 mean_var=89.3584+/-18.596, 0's: 0 Z-trim: 1  B-trim: 102 in 1/39
 Lambda= 0.1357
 Kolmogorov-Smirnov  statistic: 0.0294 (N=29) at  42

FASTA (3.36 June 2000) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, gap-pen: -12/ -2, width:  16
 Scan time:  2.850
The best scores are:                                       opt bits E(2064)
NMA0305 putative protease 296167:297153 forward M  ( 328) 2148  430 7.4e-122
NMA1778 putative secreted protease 1722397:172344  ( 350)  212   51 9.4e-08
NMA1639 putative integral membrane protein 154617  ( 417)   87   27     2.6
fabD putative malonyl CoA-acyl carrier protein tr  ( 308)   83   26     3.3
NMA1565 putative aldehyde dehydrogenase 1468716:1  ( 447)   82   26     5.4
NMA1531 hypothetical protein 1427427:1427612 forw  (  61)   67   23     6.1
glmU UDP-N-acetylglucosamine pyrophosphorylase 26  ( 456)   80   25     7.2
NMA0023 hypothetical protein NMA0023 18500:18829   ( 109)   69   23     8.2
ans L-asparaginase 1880890:1881879 reverse MW:351  ( 329)   76   25     9.1
NMA1204 hypothetical protein NMA1204 1145237:1145  ( 123)   69   23     9.2
clpP endopeptidase 1420469:1421083 reverse MW:226  ( 204)   72   24     9.9

>>>NMA0305.aa, 328 aa vs files/fp_demo.db library
; mp_name: fasta33
; mp_ver: 33t06
; mp_argv: fasta33 -m 10 NMA0305.aa files/fp_demo.db
; pg_name: FASTA
; pg_ver: 3.36 June 2000
; pg_matrix: BL50 (15:-5)
; pg_gap-pen: -12 -2
; pg_ktup: 2
; pg_optcut: 25
; pg_cgap: 37
; mp_extrap: 60000 2064
; mp_stats:  Expectation_n fit: rho(ln(x))= 7.0705+/-0.00402; mu= -0.6966+/- 0.221  mean_var=89.3584+/-18.596, 0's: 0 Z-trim: 1  B-trim: 102 in 1/39  Lambda= 0.1357
; mp_KS: 0.0294 (N=29) at  42
>>NMA0305 putative protease 296167:297153 forward MW:36051
; fa_frame: f
; fa_initn: 2148
; fa_init1: 2148
; fa_opt: 2148
; fa_z-score: 2279.7
; fa_bits: 430.1
; fa_expect: 7.4e-122
; sw_score: 2148
; sw_ident: 1.000
; sw_gident: 1.000
; sw_overlap: 328
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 1
; al_stop: 328
; al_display_start: 1
MQYRIRRENEAPEAKNAGETLWERDMMREVLLSAYRDRRRERMWKNIWRA
VSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKL
KDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVY
LVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGV
KRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGR
LKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYTP
KDDFGRILGRRFGAELKASVREALQAVR
>NMA0305 ..
; sq_len: 328
; sq_type: p
; al_start: 1
; al_stop: 328
; al_display_start: 1
MQYRIRRENEAPEAKNAGETLWERDMMREVLLSAYRDRRRERMWKNIWRA
VSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKL
KDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVY
LVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGV
KRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGR
LKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYTP
KDDFGRILGRRFGAELKASVREALQAVR
; al_cons:
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::
::::::::::::::::::::::::::::
>>NMA1778 putative secreted protease 1722397:1723449 reverse MW:39388
; fa_frame: f
; fa_initn: 156
; fa_init1: 131
; fa_opt: 212
; fa_z-score: 231.2
; fa_bits: 51.2
; fa_expect: 9.4e-08
; sw_score: 212
; sw_ident: 0.251
; sw_gident: 0.263
; sw_overlap: 235
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 90
; al_stop: 322
; al_display_start: 60
IAGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQVKKLKDGMEAAY-
-KNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMC
ASGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIA
GSNKGMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYP
DVFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYTPKDDFGRI
LGRRFGAELKASVREALQAVR
>NMA1778 ..
; sq_len: 350
; sq_type: p
; al_start: 112
; al_stop: 337
; al_display_start: 82
EAKAEKKRLKEGGEKSSETQKSRLFVLDFDGDLYAHAVESLRHEITAVLL
IAKPEDE-VLLRLESPGGVVHGYGLAASQLRRLRERN--IPLTVAVDKVA
ASGGYMMACVADKIVSAPFAIVGSVGVVAEVPNIHRLLKKHDIDVDVMTA
GEFKRTVTFMGENTEKGKQKFRQELEETHQLFKQFVSENRP-QLDIEE--
-VATGEHWFGRQALALNLIDEISTSDDLLLKAFENKQVIEVKYQEK--QS
LIQRIGLQAEASVEKLFAKLVNRRADVM
; al_cons:
                              :.     :..:.  . :. -
- .:. .-...: .::::     . :  ..:::. ..--::. .... . 
::: :..: .:::: . : .::::.::..   .   :..:  .   :  :
:  :     .. .: . .. ... :   :  : . :. .: -.: ...--
-: .:. . : .:: ..:.: ...  ..   . .  .:..   .. --. 
: .:.: . .:::..
>>NMA1639 putative integral membrane protein 1546172:1547425 reverse MW:45019
; fa_frame: f
; fa_initn:  65
; fa_init1:  65
; fa_opt:  87
; fa_z-score: 97.6
; fa_bits: 26.7
; fa_expect:    2.6
; sw_score: 87
; sw_ident: 0.303
; sw_gident: 0.307
; sw_overlap: 76
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 11
; al_stop: 86
; al_display_start: 1
--------------------MQYRIRRENEAPEAKNAGETLWERDMMREV
LLSAYRDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHT
AVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVS
NTAFEEIRRLKAQHPGIPVYLVAEDMCASG
>NMA1639 ..
; sq_len: 417
; sq_type: p
; al_start: 203
; al_stop: 277
; al_display_start: 173
GMQMQSDFIEPTPWTLAGLGFLIALMGWMPAPIEISAINSLWVTEKQR-I
NPSEYRDGIFDFNVGYIASAVLALVFLALGAFVQYGNGEAVQMAGGKYIG
QLINMYAVTIGGWSRPLVAFIAFACMYGTTITVVDGYARAIAEPVRLLRG
KDKTGNAEFFAWNIWVAGSGLAVIFWFDGV
; al_cons:
                              ::   .: ..::  . .:-.
  : :::   .     :  :: .:...:: : .   .  :.:.::.    
 ..:.:
>>fabD putative malonyl CoA-acyl carrier protein transacylase 516845:517771 reverse MW:31899
; fa_frame: f
; fa_initn:  70
; fa_init1:  70
; fa_opt:  83
; fa_z-score: 95.7
; fa_bits: 25.9
; fa_expect:    3.3
; sw_score: 83
; sw_ident: 0.294
; sw_gident: 0.315
; sw_overlap: 119
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 56
; al_stop: 171
; al_display_start: 26
MMREVLLSAYRDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAALQLAG
NTPHTAVVNLYGEIGN--GVED-QVKKLKDGMEAAYKNPQAKAIVIRANS
PGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIY
ADPSSIVGSIGVIGSSFDATGLMEKIGVKR
>fabD ..
; sq_len: 308
; sq_type: p
; al_start: 97
; al_stop: 210
; al_display_start: 67
AGVAVYRAYSEAGGKTPAAVAGHSLGEYTALVAAGALDFADAVKLVRLRA
ELMQSAVPQGVGAMAAILGLEDEQVKQIC--AESA-QDEVVEAVNF--NS
PGQVVIAGNAAAVERAMLAAKEAGAKRALPLPVSVPSHCSLMKPAADKLA
EALKTVEIKQPQIRVIHNADVAAYDDADKI
; al_cons:
                              :::  :  :      ..: .
.  ..:: .  : .. --:.::-:::.. -- :.:-..  ..:. .--::
::   ...:.:  :   : :.. :    :       : :  .  ::::.
>>NMA1565 putative aldehyde dehydrogenase 1468716:1470059 reverse MW:49296
; fa_frame: f
; fa_initn:  61
; fa_init1:  61
; fa_opt:  82
; fa_z-score: 91.8
; fa_bits: 25.7
; fa_expect:    5.4
; sw_score: 82
; sw_ident: 0.230
; sw_gident: 0.248
; sw_overlap: 122
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 139
; al_stop: 251
; al_display_start: 109
KNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCA
SGCYYIAAAADKIYADPSSIVGSIGVIGSSFDATG--LMEKIGVKRRVKI
--AGSNK-GMGDPFSPETPEQSKIWEEMLTGIHGEFIKAVKTG----RGG
RLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYSVARDVVKAPDVVDYT
PKDDFGRILGRRFGAELKASVREALQAVR
>NMA1565 ..
; sq_len: 447
; sq_type: p
; al_start: 205
; al_stop: 326
; al_display_start: 175
LAGAWLDNQDTLKAIEHTDAMAFTGSTHTGRILAAHAGANLKKTVLELGG
SNAFIVMPDADLERAAAEACYSRFRDAGQSCNAAKRIIVTEAAADRFITL
FLAECAKLKMGDPKHPDTTLAPLHREDLRDRVHGQVEDAVSNGAVCLTGG
KIPQGRGWFYPATVLDRVNPACRVWREEVFGPAALILRAENEEHAIALAN
DSPFGLGACIYTADTERAWRFAEKIQAGSVFINRHTSSDL
; al_cons:
                              :. : : :  .  .. .. .
:. . .   ::   :   .  . .   :.: .:. --.. . .. : . .
--:   :- ::::  :.:       :..   .::.   ::..:---- ::
..
>>NMA1531 hypothetical protein 1427427:1427612 forward MW:6596
; fa_frame: f
; fa_initn:  46
; fa_init1:  46
; fa_opt:  67
; fa_z-score: 90.9
; fa_bits: 22.7
; fa_expect:    6.1
; sw_score: 67
; sw_ident: 0.464
; sw_gident: 0.500
; sw_overlap: 28
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 118
; al_stop: 145
; al_display_start: 88
EIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEI
RRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVIGS
SFDATGLMEKIGVKRRVKIA
>NMA1531 ..
; sq_len: 61
; sq_type: p
; al_start: 31
; al_stop: 56
; al_display_start: 1
LNGAPHIPMPSPRYLPASPEMPGNNIHPAKIRNNTPGGRQ--SQTAPQSI
RHQKNKPPPRASS
; al_cons:
                              :: :.:::  --:.:: . :
:. : . :
>>glmU UDP-N-acetylglucosamine pyrophosphorylase 269581:270951 reverse MW:48732
; fa_frame: f
; fa_initn:  40
; fa_init1:  40
; fa_opt:  80
; fa_z-score: 89.6
; fa_bits: 25.3
; fa_expect:    7.2
; sw_score: 80
; sw_ident: 0.244
; sw_gident: 0.277
; sw_overlap: 209
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 59
; al_stop: 255
; al_display_start: 29
EVLLSAYRDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAALQLAGNTP
HTAVVNLYGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANS---P--
--GGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYI--AAAAD
KIYADPSSIVGSIGVIGS--SFDATGLMEKI-GVKRRVKIAGSNKGMGDP
FSPETPEQSKIWEEMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYT
GADALKVGLVDGLGNIYSVARDVVKAPDVVDYTPKDDFGRILGRRFGAEL
>glmU ..
; sq_len: 456
; sq_type: p
; al_start: 247
; al_stop: 442
; al_display_start: 217
RSSHLAAGVNNKLQLAELERIFQTEQAQELLKAGVTLRDPARFDLRGRLK
HGQDVVI--DVNCIFEGKIE-LGDNVEIG-ANCVIKNAKIGANSKIAPFS
HLEGCEVGENNQIGPYARLRPQAK------LADDVHVGNFVEIKNAAIGK
GTKANHLTYIGDAEV-GSKTNFGAGTIIANYDGVHKHKTVIGDEVRIGSN
CVLVSP--VKIGNKVTTGAGSTITRNVEDGKLALARSRQTIIDGWVRPEK
NKQ
; al_cons:
                              : ::.  .: : ..: :   
:   : .--...   : ...-: :..: .- :   :   : :::---:--
-- :  :  :. .    ::. :  ------.:.:. ...   :--:: . 
   :.  . .:.  :-::--.: :  .. . -::...  . :..  .:. 
    .:-- :: ... ::  . . . :. :. .  . ::
>>NMA0023 hypothetical protein NMA0023 18500:18829 forward MW:12903
; fa_frame: f
; fa_initn:  58
; fa_init1:  58
; fa_opt:  69
; fa_z-score: 88.6
; fa_bits: 23.1
; fa_expect:    8.2
; sw_score: 69
; sw_ident: 0.375
; sw_gident: 0.375
; sw_overlap: 24
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 215
; al_stop: 238
; al_display_start: 185
IGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWEEMLTG
IHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYS
VARDVVKAPDVVDYTPKDDF
>NMA0023 ..
; sq_len: 109
; sq_type: p
; al_start: 17
; al_stop: 40
; al_display_start: 1
--------------MIKLDLKSINLYDIDFEKFTPEIPDNFHRWIDLDIG
IEGEQGSSIFSLCICSPKWISHHCNKEGFFWSNALILEQFDHKIIKSEID
KILEYCSKETWDLTLSNLLR
; al_cons:
                              . :.:: :.. . : ..  :
:.::
>>ans L-asparaginase 1880890:1881879 reverse MW:35137
; fa_frame: f
; fa_initn:  54
; fa_init1:  54
; fa_opt:  76
; fa_z-score: 87.8
; fa_bits: 24.5
; fa_expect:    9.1
; sw_score: 76
; sw_ident: 0.298
; sw_gident: 0.340
; sw_overlap: 57
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 74
; al_stop: 124
; al_display_start: 44
WKNIWRAVSTLILVALIAGIFRKDEAALQLAG-NTPHTAVVNLYGEIGNG
VEDQVKK-----LKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEI
RRLKAQHPGIPVYLVAEDMC
>ans ..
; sq_len: 329
; sq_type: p
; al_start: 163
; al_stop: 218
; al_display_start: 133
FPLGLKQTLIAFDGKLYPAVGSSKVSTETAAGFDNPHFGVIAEWDETQGW
YNLRIPSQDAAAVSDGLKIRYPDPQAK-IAVRTLIPGFAVQELADGLGQL
PAQALILQSYGHGNTPADEG
; al_cons:
                              ::-..:: .:.  . :  . 
 . .. .-----..::..  : .::::-:..:.  ::
>>NMA1204 hypothetical protein NMA1204 1145237:1145608 reverse MW:13363
; fa_frame: f
; fa_initn:  82
; fa_init1:  58
; fa_opt:  69
; fa_z-score: 87.7
; fa_bits: 23.1
; fa_expect:    9.2
; sw_score: 69
; sw_ident: 0.278
; sw_gident: 0.310
; sw_overlap: 79
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 41
; al_stop: 113
; al_display_start: 11
APEAKNAGETLWERDMMREVLLSAYRDRRRERMWKNIWRAVSTLILVALI
AGIFRKDEAALQLAGNTPHTAVVNLYGEIGNGVEDQ------VKKLKDGM
EAAYKNPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAE
DMCASGCYYIAAAADKIYADPSSIVGSIGV
>NMA1204 ..
; sq_len: 123
; sq_type: p
; al_start: 36
; al_stop: 112
; al_display_start: 6
IYTHPALPPQAVKQGWSWPGLLFGTLWACFKRMWGLGLGLTGAIFVLAVF
AQLVYGDTPATDSAFNVLGLAVSVWFGAKGNSLYARHLLSRGYTELPETV
EAA--NPQAALAQYFGRGGR
; al_cons:
                              .:::      .......:..
: .   :  : . : :.   ::   .:  ::..  .------  .: . .
:::--::::
>>clpP endopeptidase 1420469:1421083 reverse MW:22604
; fa_frame: f
; fa_initn:  43
; fa_init1:  43
; fa_opt:  72
; fa_z-score: 87.1
; fa_bits: 23.7
; fa_expect:    9.9
; sw_score: 72
; sw_ident: 0.214
; sw_gident: 0.226
; sw_overlap: 112
>NMA0305 ..
; sq_len: 328
; sq_offset: 1
; sq_type: p
; al_start: 66
; al_stop: 177
; al_display_start: 36
RDRRRERMWKNIWRAVSTLILVALIAGIFRKDEAALQLAGNTPHTAVVNL
YGEIGNGVEDQVKKLKDGMEAAYKNPQAKAIVIRANSPGGSPVVSNTAFE
EIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAADKIYADPSSIVGSIGVI
GSSFDATGLMEKIGVKRRVKIAGSNKGMGD
>clpP ..
; sq_len: 204
; sq_type: p
; al_start: 17
; al_stop: 122
; al_display_start: 1
--------------MSFDNYLVPTVIEQSGRGERAFDIYSRLLKERIVFL
VGPVTDESANLVVAQLLFLES--ENPD-KDIFFYINSPGGSVTAGMSIYD
TMNFIK---PDVSTLCLGQAASMGAFLLSAGEKGKRFALPNSRIMIHQPL
ISGGLGGQASDIEIHARELLKIKEKLNRLM
; al_cons:
                              . : :... .   .  .: :
 : . .   . :      .:.--.::.-: : .  :::::: ... . ..
 .  .:---: . .  ...    ..    :.   : .: :.:
>>><<<


328 residues in 1 query   sequences
585987 residues in 2065 library sequences
 Scomplib [version 3.3t06 June 2, 2000]
 start: Sat Feb 10 21:12:19 2001 done: Sat Feb 10 21:12:22 2001
 Scan time:  2.850 Display time:  0.460

Function used was FASTA
