Uses of Class org.biojava.utils.lsid.LifeScienceIdentifier (BioJava-1.5-beta API)

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## Uses of Class
org.biojava.utils.lsid.LifeScienceIdentifier

Packages that use LifeScienceIdentifier
org.biojava.bio.program.formats | Experimental parsers using the tagvalue framework.
org.biojava.bio.program.indexdb | A flat-file ascii index of ascii flat files as per the OBDA specification.
org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences.
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them.
org.biojava.utils.lsid | Life Science Identifier (LSID) package.

Uses of LifeScienceIdentifier in org.biojava.bio.program.formats

Methods in org.biojava.bio.program.formats that return LifeScienceIdentifier
`LifeScienceIdentifier` | `Swissprot.getLSID()`
`LifeScienceIdentifier` | `Enzyme.getLSID()`
`LifeScienceIdentifier` | `Ligand.Enzyme.getLSID()`
`LifeScienceIdentifier` | `Ligand.Reaction.getLSID()`
`LifeScienceIdentifier` | `Ligand.Compound.getLSID()`
`LifeScienceIdentifier` | `Embl.getLSID()`
`LifeScienceIdentifier` | `Format.getLSID()` Retrieve the LSID associated with this format.

Uses of LifeScienceIdentifier in org.biojava.bio.program.indexdb

Methods in org.biojava.bio.program.indexdb that return LifeScienceIdentifier
`LifeScienceIdentifier` | `BioStoreFactory.getSequenceFormat()` `getSequenceFormat` returns the current sequence format name.

Methods in org.biojava.bio.program.indexdb with parameters of type LifeScienceIdentifier
`void` | `BioStoreFactory.setSequenceFormat(LifeScienceIdentifier format)` `setSequenceFormat` sets the sequence format name which will be indicated in the index.

Uses of LifeScienceIdentifier in org.biojava.bio.seq.io

Fields in org.biojava.bio.seq.io declared as LifeScienceIdentifier
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_EMBL_AA` `LSID_EMBL_AA` sequence format LSID for EMBL AA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_EMBL_DNA` `LSID_EMBL_DNA` sequence format LSID for EMBL DNA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_EMBL_RNA` `LSID_EMBL_RNA` sequence format LSID for EMBL RNA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_FASTA_AA` `LSID_FASTA_AA` sequence format LSID for Fasta AA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_FASTA_DNA` `LSID_FASTA_DNA` sequence format LSID for Fasta DNA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_FASTA_RNA` `LSID_FASTA_RNA` sequence format LSID for Fasta RNA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_GENBANK_AA` `LSID_GENBANK_AA` sequence format LSID for Genbank AA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_GENBANK_DNA` `LSID_GENBANK_DNA` sequence format LSID for Genbank DNA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_GENBANK_RNA` `LSID_GENBANK_RNA` sequence format LSID for Genbank RNA.
`static LifeScienceIdentifier` | `SeqIOConstants.LSID_SWISSPROT` `LSID_SWISSPROT` sequence format LSID for Swissprot.

Uses of LifeScienceIdentifier in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol with parameters of type LifeScienceIdentifier
`static Symbol` | `AlphabetManager.symbolForLifeScienceID(LifeScienceIdentifier lsid)` Retreives the Symbol for the LSID

Uses of LifeScienceIdentifier in org.biojava.utils.lsid

Methods in org.biojava.utils.lsid that return LifeScienceIdentifier
`LifeScienceIdentifier` | `Identifiable.getIdentifier()` Return the identifier of this object.
`static LifeScienceIdentifier` | `LifeScienceIdentifier.valueOf(String lsid)` Create a new LifeScienceIdentifier parsed from the properly formatted string `lsid`.
`static LifeScienceIdentifier` | `LifeScienceIdentifier.valueOf(String authorityId, String namespaceId, String objectId)` Create a new LifeScienceIdentifier from the specified parameters.
`static LifeScienceIdentifier` | `LifeScienceIdentifier.valueOf(String authorityId, String namespaceId, String objectId, String revisionId)` Create a new LifeScienceIdentifier from the specified parameters.

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