BLASTP 2.0a19MP-WashU [05-Feb-1998] [Build sol2.5-ultra 01:47:24 05-Feb-1998]

Reference:  Gish, Warren (1994-1997).  unpublished.
Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman (1990).  Basic local alignment search tool.  J. Mol. Biol. 215:403-10.

Query=  sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) - Homo
    sapiens (Human).
        (214 letters)

Database:  swissprot
           72,615 sequences; 26,335,942 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 (HM...  1144  8.6e-117  1
sp|P10103|HMG1_BOVIN HIGH MOBILITY GROUP PROTEIN HMG1 (HM...  1140  2.3e-116  1
sp|P07155|HMG1_MOUSE HIGH MOBILITY GROUP PROTEIN HMG1 (HM...  1137  4.7e-116  1
sp|P12682|HMG1_PIG   HIGH MOBILITY GROUP PROTEIN HMG1 (HM...  1135  7.7e-116  1

>sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
            Length = 214

 Score = 1144 (402.7 bits), Expect = 8.6e-117, P = 8.6e-117
 Identities = 214/214 (100%), Positives = 214/214 (100%)

Query:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
             GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
             DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180
             IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS
Sbjct:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180

Query:   181 KKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 214
             KKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
Sbjct:   181 KKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 214


>sp|P10103|HMG1_BOVIN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
            Length = 214

 Score = 1140 (401.3 bits), Expect = 2.3e-116, P = 2.3e-116
 Identities = 213/214 (99%), Positives = 214/214 (100%)

Query:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
             GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
             DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180
             IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS
Sbjct:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180

Query:   181 KKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 214
             KKKKEEEEDEEDEEDEEEEEDEEDE+EEEDDDDE
Sbjct:   181 KKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDDE 214


>sp|P07155|HMG1_MOUSE HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (AMPHOTERIN)
            (HEPARIN-BINDING PROTEIN P30).
            Length = 214

 Score = 1137 (400.2 bits), Expect = 4.7e-116, P = 4.7e-116
 Identities = 212/214 (99%), Positives = 214/214 (100%)

Query:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
             GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
             DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180
             IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS
Sbjct:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180

Query:   181 KKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 214
             KKKKEEE+DEEDEEDEEEEE+EEDEDEEEDDDDE
Sbjct:   181 KKKKEEEDDEEDEEDEEEEEEEEDEDEEEDDDDE 214


>sp|P12682|HMG1_PIG HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
            Length = 214

 Score = 1135 (399.5 bits), Expect = 7.7e-116, P = 7.7e-116
 Identities = 212/214 (99%), Positives = 213/214 (99%)

Query:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
             GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct:     1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
             DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct:    61 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query:   121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180
             IGDVAKKLGEMWNNTAADDK PYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS
Sbjct:   121 IGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKS 180

Query:   181 KKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE 214
             KKKKEEEEDEEDEEDEEEEEDEEDE+EEEDDDDE
Sbjct:   181 KKKKEEEEDEEDEEDEEEEEDEEDEEEEEDDDDE 214

Parameters:

  ctxfactor=1.00
  E=10

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.304   0.127   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +0      0      214       214       10.  69 3  11 23  0.21    34
                                                    31  0.25    35


Statistics:

  Database:  /dbEST1/wublast/database/swissprot/sprot.fa
    Title:  swissprot
    Release date:  unknown
    Posted date:  11:37 AM GMT Feb 21, 2000
    Format:  BLAST
  # of letters in database:  26,335,942
  # of sequences in database:  72,615
  # of database sequences satisfying E:  1119
  No. of states in DFA:  549 (54 KB)
  Total size of DFA:  117 KB (128 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  2
  Search cpu time:  38.04u 0.15s 38.19t  Elapsed: 00:00:33
  Total cpu time:  38.96u 0.29s 39.25t  Elapsed: 00:00:34
  Start:  Mon Feb 21 14:33:13 2000   End:  Mon Feb 21 14:33:47 2000

WARNINGS ISSUED:  2
