Uses of Class org.biojava.bio.symbol.AbstractSymbolList (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
org.biojava.bio.symbol.AbstractSymbolList

Packages that use AbstractSymbolList
org.biojava.bio.alignment | Classes to generate and describe sequence alignments.
org.biojava.bio.seq.impl | Standard in-memory implementations of `Sequence` and `Feature`.
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them.

Uses of AbstractSymbolList in org.biojava.bio.alignment

Subclasses of AbstractSymbolList in org.biojava.bio.alignment
`class` | `AbstractULAlignment`
`class` | `AbstractULAlignment.SubULAlignment`
`class` | `FlexibleAlignment` FlexibleAlignment is a class which implements UnequalLengthAlignment, ARAlignment and EditableAlignment It places no restriction on where any sequence can be in the alignment so there could be gaps in the alignment.

Uses of AbstractSymbolList in org.biojava.bio.seq.impl

Subclasses of AbstractSymbolList in org.biojava.bio.seq.impl
`class` | `AssembledSymbolList` Support class for applications which need to patch together sections of sequence into a single SymbolList.
`class` | `NewAssembledSymbolList` Support class for applications which need to patch together sections of sequence into a single SymbolList.
`class` | `SimpleGappedSequence` Simple implementation of GappedSequence.

Uses of AbstractSymbolList in org.biojava.bio.symbol

Subclasses of AbstractSymbolList in org.biojava.bio.symbol
`class` | `ChunkedSymbolList` SymbolList implementation using constant-size chunks.
`class` | `DummySymbolList` Symbol list which just consists of non-informative symbols.
`class` | `PackedSymbolList` A SymbolList that stores symbols as bit-patterns in an array of longs.
`class` | `SimpleAlignment` A simple implementation of an Alignment.
`class` | `SimpleGappedSymbolList` This implementation of GappedSymbolList wraps a SymbolList, allowing you to insert gaps.
`class` | `SimpleSymbolList` Basic implementation of SymbolList.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES