Uses of Interface org.biojava.bio.program.homologene.OrthoPairSet (BioJava-1.5-beta API)

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## Uses of Interface
org.biojava.bio.program.homologene.OrthoPairSet

Packages that use OrthoPairSet
org.biojava.bio.program.homologene | Support classes for Homologene data.

Uses of OrthoPairSet in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement OrthoPairSet
`class` | `AbstractOrthoPairSet` represents the Homologene Group.
`class` | `SimpleOrthoPairSet` a no-frills implementation of a Homologene Group

Methods in org.biojava.bio.program.homologene that return OrthoPairSet
`OrthoPairSet` | `SimpleHomologeneDB.createOrthoPairSet()`
`OrthoPairSet` | `HomologeneDB.createOrthoPairSet()` Create a Homologene Group.
`OrthoPairSet` | `AbstractOrthoPairSet.filter(OrthoPairFilter filter)`
`OrthoPairSet` | `OrthoPairSet.filter(OrthoPairFilter filter)` filter an OrthoPairSet
`OrthoPairSet` | `OrthoPairCollection.Iterator.nextSet()` returns the next OrthoPairSet
`OrthoPairSet` | `SimpleOrthoPairCollection.Iterator.nextSet()`

Methods in org.biojava.bio.program.homologene with parameters of type OrthoPairSet
`boolean` | `OrthoPairSetFilter.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.AcceptAll.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.Not.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.Or.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.And.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.Xor.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.ByTaxon.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.ByMinIdentity.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.AllPairsInCollection.accept(OrthoPairSet group)`
`boolean` | `OrthoPairSetFilter.SomePairsInCollection.accept(OrthoPairSet group)`
`abstract void` | `AbstractOrthoPairCollection.add(OrthoPairSet group)`
`void` | `OrthoPairCollection.add(OrthoPairSet group)`
`void` | `SimpleOrthoPairCollection.add(OrthoPairSet group)`
`abstract boolean` | `AbstractOrthoPairCollection.contains(OrthoPairSet group)`
`boolean` | `OrthoPairCollection.contains(OrthoPairSet group)`
`boolean` | `SimpleOrthoPairCollection.contains(OrthoPairSet group)`

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