org.biojava.bio.seq.homol (BioJava-1.5-beta API)
Keywords: org.biojava.bio.seq.homol package

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## Package org.biojava.bio.seq.homol

The classes and interfaces for defining sequence similarity and honology.

See:
Description

Interface Summary
Homology | Signifies that two or more features are homologous.
HomologyDB |
HomologyFeature |
SimilarityPairFeature | `SimilarityPairFeature` describes a pairwise similarity between two nucleotide sequences (as it extends `StrandedFeature`).

Class Summary
HomologyFeature.Template |
SimilarityPairFeature.EmptyPairwiseAlignment | `EmptyPairwiseAlignment` empty pairwise alignment which has labels to empty symbol lists.
SimilarityPairFeature.Template | `Template` for construction of `SimilarityPairFeature`s.
SimpleHomology | A no-frills implementation of Homology.

## Package org.biojava.bio.seq.homol Description

The classes and interfaces for defining sequence similarity and honology.

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