Uses of Interface org.biojavax.RichAnnotatable (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojavax.RichAnnotatable

Packages that use RichAnnotatable
org.biojavax | The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio | Classes to represent biological entities and their relationships.
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features.

Uses of RichAnnotatable in org.biojavax

Subinterfaces of RichAnnotatable in org.biojavax
`interface` | `CrossRef` Represents a cross reference to another database.

Classes in org.biojavax that implement RichAnnotatable
`class` | `SimpleCrossRef` A basic CrossRef implementation.

Uses of RichAnnotatable in org.biojavax.bio

Subinterfaces of RichAnnotatable in org.biojavax.bio
`interface` | `BioEntry` This class relates to the bioentry table in BioSQL.

Classes in org.biojavax.bio that implement RichAnnotatable
`class` | `SimpleBioEntry` Reference implementation of a BioEntry object which has no features or sequence.

Uses of RichAnnotatable in org.biojavax.bio.seq

Subinterfaces of RichAnnotatable in org.biojavax.bio.seq
`interface` | `RichFeature` Represents a feature that can be given name and rank and be moved from one sequence to another.
`interface` | `RichLocation` Describes locations, and adds the concepts of circularity, fuzziness, annotations, and cross-references to other databases.
`interface` | `RichSequence` A rich sequence is a combination of a org.biojavax.bio.Bioentry and a Sequence.

Classes in org.biojavax.bio.seq that implement RichAnnotatable
`class` | `CompoundRichLocation` An implementation of RichLocation which covers multiple locations, but on the same strand of the same (optionally circular) sequence.
`class` | `EmptyRichLocation` An Empty implementation of RichLocation.
`class` | `MultiSourceCompoundRichLocation` An implementation of RichLocation which possibly covers multiple locations, on different strands, different circular lengths, or different sequences.
`class` | `SimpleRichFeature` A simple implementation of RichFeature.
`class` | `SimpleRichLocation` A simple implementation of RichLocation.
`class` | `SimpleRichSequence` A simple implementation of RichSequence.
`class` | `ThinRichSequence` A simple implementation of RichSequence.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES