org.biojava.bio.program.sax (BioJava-1.5-beta API)
Keywords: org.biojava.bio.program.sax package

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## Package org.biojava.bio.program.sax

Parsers which offer XML representations of the output from common bioinformatics tools.

See:
Description

Class Summary
BlastLikeSAXParser | A facade class allowing for direct SAX2-like parsing of the native output from Blast-like bioinformatics software.
ClustalWAlignmentSAXParser | A SAX2 parser for dealing with a multiple sequence alignment as produced by ClustalW outputing .aln format.
FastaSearchSAXParser | `FastaSearchSAXParser` is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).
FastaSequenceSAXParser | A SAX2 parser for dealing with multiple sequences in FASTA format.
PdbSAXParser | A SAX2 parser for dealing with native PDB files.
SequenceAlignmentSAXParser | A SAX2 parser for dealing with a sequence alignments.

## Package org.biojava.bio.program.sax Description

Parsers which offer XML representations of the output from common bioinformatics tools.

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