BLASTP 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) -
Homo sapiens (Human).
         (214 letters)

Database: sprot.fas
           72,615 sequences; 26,335,942 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

P07155;P27109;P27428 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (...   326  2e-89
P09429 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     326  2e-89
P10103 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     326  2e-89
P12682 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     324  9e-89
P26583 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     284  1e-76
P17741 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     283  1e-76
P52925 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     282  3e-76
P30681 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     279  2e-75
P26584 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     279  3e-75
P07746 HIGH MOBILITY GROUP-T PROTEIN (HMG-T).                        266  2e-71
P07156 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (FRAGMENT).          252  4e-67
P40618 HIGH MOBILITY GROUP PROTEIN HMG2A (HMG-2A).                   251  8e-67
P36194 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     243  2e-64
P40644 HIGH MOBILITY GROUP PROTEIN 1 HOMOLOG.                        165  7e-41
Q09390 HYPOTHETICAL 23.8 KD PROTEIN F47D12.4 IN CHROMOSOME III.      131  1e-30
P40673 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2) (FRAGMENT).           83  5e-16
Q08943 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    75  8e-14
Q04931 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    75  1e-13
Q08945 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    73  4e-13
P26586 HIGH MOBILITY GROUP PROTEIN HOMOLOG TDP-1.                     69  8e-12
P11632 NONHISTONE CHROMOSOMAL PROTEIN 6A.                             68  1e-11
Q04678 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    67  2e-11
P27347 DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN).                 66  4e-11
P11633 NONHISTONE CHROMOSOMAL PROTEIN 6B.                             65  1e-10
P40620 HMG1/2-LIKE PROTEIN.                                           64  2e-10
P40619 HMG1/2-LIKE PROTEIN.                                           63  3e-10
P40621 HMG1/2-LIKE PROTEIN.                                           62  1e-09
P41848 PROBABLE STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)      59  5e-09
Q02486 ARS-BINDING FACTOR 2 PRECURSOR.                                59  5e-09
Q05344 SINGLE-STRAND RECOGNITION PROTEIN (SSRP) (CHORION-FACTOR...    59  7e-09
P11873 NONHISTONE CHROMOSOMAL PROTEIN LG-1.                           59  9e-09
P33417 INTRASTRAND CROSSLINK RECOGNITION PROTEIN (STRUCTURE-SPE...    58  2e-08
P40625 HIGH-MOBILITY-GROUP PROTEIN (NONHISTONE CHROMOSOMAL PROT...    57  3e-08
Q05153 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 HOMOLOG (HMG PR...    56  4e-08
P26585 HMG1/2-LIKE PROTEIN (SB11 PROTEIN).                            56  4e-08
P40627 HIGH-MOBILITY-GROUP PROTEIN C (FRAGMENT).                      56  4e-08
P40628 HIGH MOBILITY GROUP PROTEIN HOMOLOG.                           55  8e-08
P40632 HIGH MOBILITY GROUP PROTEIN HOMOLOG NHP1.                      55  1e-07
P25977;P25978 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDIN...    54  2e-07
P17480 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTO...    54  2e-07
P25976 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTO...    53  3e-07
P54277 PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN PMS1).     50  3e-06
P40630 TESTIS-SPECIFIC HIGH MOBILITY GROUP PROTEIN (TS-HMG).          50  3e-06
P40622 MOBILITY GROUP PROTEIN 1A.                                     50  4e-06
Q00059 MITOCHONDRIAL TRANSCRIPTION FACTOR 1 PRECURSOR (MTTF1).        49  8e-06
P25980 NUCLEOLAR TRANSCRIPTION FACTOR 2 (UPSTREAM BINDING FACTO...    48  2e-05
P25979 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTO...    48  2e-05
Q03435 NHP10 PROTEIN.                                                 47  2e-05
P40631 MICRONUCLEAR LINKER HISTONE POLYPROTEIN (CONTAINS: LINKE...    47  2e-05
Q06943 HIGH MOBILITY GROUP PROTEIN Z (HMG-Z).                         46  5e-05
Q39601 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 HOMOLOG (HMG PR...    46  7e-05
Q05783 HIGH MOBILITY GROUP PROTEIN D (HMG-D).                         45  9e-05
P40623 MOBILITY GROUP PROTEIN 1B.                                     45  1e-04
Q10241 HYPOTHETICAL 26.3 KD PROTEIN C4G9.11C IN CHROMOSOME I.         44  3e-04
P40626 HIGH-MOBILITY-GROUP PROTEIN B.                                 44  3e-04
O00570 SOX-1 PROTEIN.                                                 41  0.002
P53783 SOX-1 PROTEIN.                                                 40  0.004
P55863 TRANSCRIPTION FACTOR SOX-3.                                    39  0.005
Q03257 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    39  0.006
Q03255 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    39  0.008
Q27949 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    39  0.008
P54231 TRANSCRIPTION FACTOR SOX-2.                                    39  0.008
P48432 TRANSCRIPTION FACTOR SOX-2.                                    39  0.008
P48431;Q14537 TRANSCRIPTION FACTOR SOX-2.                             39  0.008
P48430 TRANSCRIPTION FACTOR SOX-2.                                    39  0.008
P36981 MATING TYPE PROTEIN A-1 (MT A-1) (LOWER CASE "A").             39  0.008
O09141;O08518 TRANSCRIPTION FACTOR SOX-21 (TRANSCRIPTION FACTOR...    38  0.011
P47792 TRANSCRIPTION FACTOR SOX-19.                                   38  0.011
Q03256 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    38  0.014
P51501 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    38  0.019
O18896 TRANSCRIPTION FACTOR SOX-9.                                    38  0.019
P48436 TRANSCRIPTION FACTOR SOX-9.                                    38  0.019
P48434 TRANSCRIPTION FACTOR SOX-9.                                    38  0.019
P40645 TRANSCRIPTION FACTOR SOX-6.                                    38  0.019
P53784 TRANSCRIPTION FACTOR SOX-3.                                    38  0.019
P41225;P35714 TRANSCRIPTION FACTOR SOX-3.                             38  0.019
P48433 TRANSCRIPTION FACTOR SOX-3.                                    37  0.025
P10840 MATING-TYPE M-SPECIFIC POLYPEPTIDE MC.                         37  0.025
P40649 SOX-12 PROTEIN.                                                37  0.032
Q00417 T-CELL-SPECIFIC TRANSCRIPTION FACTOR 1 (TCF-1) (T-CELL F...    36  0.042
Q06945 TRANSCRIPTION FACTOR SOX-4.                                    36  0.042
P40637 SRY-RELATED PROTEIN AES1 (FRAGMENT).                           36  0.073
P40634 SRY-RELATED PROTEIN ADW2 (FRAGMENT).                           36  0.073
Q61473;Q61472 TRANSCRIPTION FACTOR SOX-17.                            35  0.095
P36395 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    35  0.095
Q62563 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    35  0.12
Q62565 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    35  0.12
Q06831 TRANSCRIPTION FACTOR SOX-4.                                    35  0.12
P40639 SRY-RELATED PROTEIN AES4 (FRAGMENT).                           35  0.12
Q12766 HYPOTHETICAL PROTEIN KIAA0194 (FRAGMENT).                      34  0.16
Q05738 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    34  0.16
Q05066 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    34  0.16
P48046 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    34  0.16
P35710 TRANSCRIPTION FACTOR SOX-5.                                    34  0.16
P35711 TRANSCRIPTION FACTOR SOX-5.                                    34  0.16
O15370 SOX-22 PROTEIN.                                                34  0.21
P43680 TRANSCRIPTION FACTOR SOX-18.                                   34  0.21
Q04889;O35178 TRANSCRIPTION FACTOR SOX-11.                            34  0.21
P35716 TRANSCRIPTION FACTOR SOX-11.                                   34  0.21
P48435 TRANSCRIPTION FACTOR SOX-11.                                   34  0.21
P36393 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING FAC...    34  0.21
P40655 SRY-RELATED PROTEIN LG28 (FRAGMENT).                           34  0.21
P40638 SRY-RELATED PROTEIN AES2 (FRAGMENT).                           34  0.21
P40636 SRY-RELATED PROTEIN ADW5 (FRAGMENT).                           34  0.21
P40635 SRY-RELATED PROTEIN ADW4 (FRAGMENT).                           34  0.21
P40651 SRY-RELATED PROTEIN MG42 (FRAGMENT).                           34  0.28
P40654 SRY-RELATED PROTEIN LG27 (FRAGMENT).                           34  0.28
P35717 SOX-12 PROTEIN (FRAGMENT).                                     33  0.37
P25042 ROX1 REPRESSOR (HYPOXIC FUNCTION REPRESSOR) (HEME-DEPEND...    33  0.37
P40665 SRY-RELATED PROTEIN CH1 (FRAGMENT).                            33  0.37
Q08696 AXONEME-ASSOCIATED PROTEIN MST101(2).                          33  0.48
Q02991 MATING-TYPE PROTEIN MAT-2.                                     33  0.48
P40652 SRY-RELATED PROTEIN MG43 (FRAGMENT).                           32  0.63
P40670 SRY-RELATED PROTEIN CH31 (FRAGMENT).                           32  0.63
P40642 SRY-RELATED PROTEIN AMA2 (FRAGMENT).                           32  0.63
P40657 SOX-15 PROTEIN (FRAGMENT).                                     31  1.4
Q04892 SOX-14 PROTEIN (FRAGMENT).                                     31  1.4
Q00956 COAT PROTEIN.                                                  31  1.4
P40640 SRY-RELATED PROTEIN AES6 (FRAGMENT).                           31  1.4
P40656 SOX-14 PROTEIN (FRAGMENT).                                     31  1.9
P35715 SOX-10 PROTEIN (FRAGMENT).                                     31  1.9
Q09202 HYPOTHETICAL 25.9 KD PROTEIN AH6.3 IN CHROMOSOME II.           30  3.2
P09208;Q24089;Q24023 INSULIN-LIKE RECEPTOR PRECURSOR (EC 2.7.1....    30  3.2
Q11102 HYPOTHETICAL 131.5 KD PROTEIN C02F12.7 IN CHROMOSOME X.        29  5.5
P19375 HISTONE H1, EARLY EMBRYONIC.                                   29  7.2

>P07155;P27109;P27428 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
           (AMPHOTERIN) (HEPARIN-BINDING
           Length = 214
           
 Score =  326 bits (826), Expect = 2e-89
 Identities = 154/168 (91%), Positives = 154/168 (91%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 168


>P09429 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 214
           
 Score =  326 bits (826), Expect = 2e-89
 Identities = 154/168 (91%), Positives = 154/168 (91%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 168


>P10103 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 214
           
 Score =  326 bits (826), Expect = 2e-89
 Identities = 154/168 (91%), Positives = 154/168 (91%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 121 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 168


>P12682 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 214
           
 Score =  324 bits (821), Expect = 9e-89
 Identities = 153/168 (91%), Positives = 153/168 (91%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDK P              DIAAYRAKGKPD
Sbjct: 121 IGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPD 168


>P26583 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 208
           
 Score =  284 bits (718), Expect = 1e-76
 Identities = 132/168 (78%), Positives = 142/168 (83%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLS
Sbjct: 61  DMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK +
Sbjct: 121 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 168


>P17741 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 209
           
 Score =  283 bits (717), Expect = 1e-76
 Identities = 132/166 (79%), Positives = 141/166 (84%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLS
Sbjct: 61  DMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK
Sbjct: 121 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGK 166


>P52925 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 209
           
 Score =  282 bits (715), Expect = 3e-76
 Identities = 131/168 (77%), Positives = 142/168 (83%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           D+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLS
Sbjct: 61  DLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK +
Sbjct: 121 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 168


>P30681 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 209
           
 Score =  279 bits (707), Expect = 2e-75
 Identities = 131/168 (77%), Positives = 141/168 (82%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           D+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE RPKIK EHPGLS
Sbjct: 61  DLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK +
Sbjct: 121 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 168


>P26584 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 206
           
 Score =  279 bits (706), Expect = 3e-75
 Identities = 129/168 (76%), Positives = 140/168 (82%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYA+FVQTCREEHKKKHPD+SVNF+EFS+KCSERWKTMS+KEKGKFE
Sbjct: 1   GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE 60

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           +MAK DKARY+REMK Y+PPKGE K K KDPNAPKRPPSAFFLFCSE+RPKIK +HPGLS
Sbjct: 61  EMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS 120

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+   A DKQP              DIAAYRAK K D
Sbjct: 121 IGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRAKSKSD 168


>P07746 HIGH MOBILITY GROUP-T PROTEIN (HMG-T).
           Length = 204
           
 Score =  266 bits (674), Expect = 2e-71
 Identities = 123/163 (75%), Positives = 137/163 (83%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP+KPRGKMSSYA+FVQT REEHKKKHP+ASVNFSEFSKKCSERWKTMSAKEKGKFED+A
Sbjct: 4   DPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLA 63

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 123
           K DK RYEREM++YIPPKGE KK+FKDPNAPKRP SAFF+FC+++RP++KGE PGLSIGD
Sbjct: 64  KLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGD 123

Query: 124 VAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
           VAKKLGE WNN  A+DK P              DI AYR KGK
Sbjct: 124 VAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGK 166


 Score = 34.0 bits (76), Expect = 0.21
 Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 2/54 (3%)

Query: 89  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDK 140
           KDP  P+   S++  F    R + K +HP  S+   + +KK  E W   +A +K
Sbjct: 3   KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEK 56


>P07156 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (FRAGMENT).
           Length = 180
           
 Score =  252 bits (637), Expect = 4e-67
 Identities = 120/134 (89%), Positives = 120/134 (89%)

Query: 35  VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP 94
           VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP
Sbjct: 1   VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP 60

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP            
Sbjct: 61  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 120

Query: 155 XXDIAAYRAKGKPD 168
             DIAAYRAKGKPD
Sbjct: 121 EKDIAAYRAKGKPD 134


 Score = 44.5 bits (103), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 37/74 (49%), Gaps = 2/74 (2%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+   S++  F    R + K +HP  S+   + +KK  E W   +A +K  +E  A
Sbjct: 56  DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKA 113

Query: 64  KADKARYEREMKTY 77
              K +YE+++  Y
Sbjct: 114 AKLKEKYEKDIAAY 127


>P40618 HIGH MOBILITY GROUP PROTEIN HMG2A (HMG-2A).
           Length = 201
           
 Score =  251 bits (634), Expect = 8e-67
 Identities = 118/167 (70%), Positives = 135/167 (80%), Gaps = 2/167 (1%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWKTMS+KEK KF++
Sbjct: 2   KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDE 61

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
           MAKADK RY+REMK Y P KG  KK  KDPNAPKRPPSAFFLFCSE+RPKIK  +PG+SI
Sbjct: 62  MAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSAFFLFCSEFRPKIKSTNPGISI 119

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GDVAKKLGEMWNN +  +KQP              D+A Y++KGK D
Sbjct: 120 GDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 166


>P36194 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 200
           
 Score =  243 bits (613), Expect = 2e-64
 Identities = 116/167 (69%), Positives = 133/167 (79%), Gaps = 3/167 (1%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           KGDPKKP+GKMS+YAFFVQTCREEHKK +P+  VNF+EFSKKCSERWKTMS+KEK KF++
Sbjct: 2   KGDPKKPKGKMSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDE 60

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
           MAKADK RY+REMK Y P KG  KKK  DPNAPKRPPS FFLFCSE+RPKIK  +PG+SI
Sbjct: 61  MAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 118

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GDVAKKLGEMWNN +  +KQP              D+A Y++KGK D
Sbjct: 119 GDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 165


>P40644 HIGH MOBILITY GROUP PROTEIN 1 HOMOLOG.
           Length = 200
           
 Score =  165 bits (413), Expect = 7e-41
 Identities = 81/167 (48%), Positives = 102/167 (60%), Gaps = 3/167 (1%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           D  KPRG+MS+YA+FVQ  R EH K HP++ V F+EFSK CS RWK +  K KG F + +
Sbjct: 7   DSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEKS 66

Query: 64  KADKARYEREMKTYIPPKGETKK---KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
             DK RY+REM++Y PPKGE  K   + KDP+APKR  SAFF+F  E R  IK  HP  S
Sbjct: 67  MRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPNWS 126

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKP 167
           +GD+AK+L   W    A +K P               +A Y+AK KP
Sbjct: 127 VGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYKAKAKP 173


 Score = 49.2 bits (115), Expect = 6e-06
 Identities = 29/97 (29%), Positives = 48/97 (48%), Gaps = 2/97 (2%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  +S++  F    R   K  HP+ SV   + +K+ + RW+ M+A EK  F+  A
Sbjct: 96  DPDAPKRNLSAFFIFSGENRAAIKSVHPNWSVG--DIAKELAVRWRAMTAGEKIPFDKGA 153

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSA 100
             DK RY + M  Y       K++ K+ ++     S+
Sbjct: 154 AKDKERYIKAMAEYKAKAKPMKRQVKESSSSSSSDSS 190


>Q09390 HYPOTHETICAL 23.8 KD PROTEIN F47D12.4 IN CHROMOSOME III.
           Length = 202
           
 Score =  131 bits (326), Expect = 1e-30
 Identities = 68/165 (41%), Positives = 95/165 (57%), Gaps = 4/165 (2%)

Query: 4   DPKKP--RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           D  KP  RGK S Y FFV+ C EEHKKK+P+ +V  +E SKKCSE+WKTM   EK +F +
Sbjct: 8   DMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYE 67

Query: 62  MAKADKARYEREMKTYIPPKGETKKK--FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 119
           +A+ D  RY+ E+  Y       K+K   KDP+APKR  SAFF +  + RP+I+  HP  
Sbjct: 68  LAQKDAERYQAEVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDW 127

Query: 120 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
            +G VA++LG+MW     + K                ++  Y+A+
Sbjct: 128 KVGQVAQELGKMWKLVPQETKDMYEQKAQADKDRYADEMRNYKAE 172


 Score = 52.3 bits (123), Expect = 7e-07
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +S++ F+ Q  R E +  HPD  V   + +++  + WK +  + K  +E 
Sbjct: 96  KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKV--GQVAQELGKMWKLVPQETKDMYEQ 153

Query: 62  MAKADKARYEREMKTYIPPKGETKK 86
            A+ADK RY  EM+ Y   K E +K
Sbjct: 154 KAQADKDRYADEMRNY---KAEMQK 175


>P40673 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2) (FRAGMENT).
          Length = 38
          
 Score = 82.7 bits (201), Expect = 5e-16
 Identities = 36/38 (94%), Positives = 37/38 (96%)

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFS 38
          GKGDP KPRGKMSSYAFFVQTCREEHKKKHPDASVNF+
Sbjct: 1  GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFA 38


>Q08943 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
           (RECOMBINATION SIGNAL
           Length = 708
           
 Score = 75.3 bits (182), Expect = 8e-14
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 28  KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
           ++  D +  F   +   S   +  S +E+ K E + +A  A+  +  +     K    KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDREEKKREQLKRAKMAKDRKSRR-----KSSEAKK 540

Query: 88  FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
            KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 594


 Score = 61.7 bits (147), Expect = 1e-09
 Identities = 31/92 (33%), Positives = 51/92 (54%), Gaps = 2/92 (2%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
           +  +  YE+ MK Y   +G++ K+ K     K
Sbjct: 601 EDARREYEKAMKEYEGGRGDSSKRDKSKKKKK 632


>Q04931 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
           (RECOMBINATION SIGNAL
           Length = 561
           
 Score = 74.5 bits (180), Expect = 1e-13
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 28  KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
           ++  D +  F   +   S   +  S +E+ K + + +A  A+  +  K     K    KK
Sbjct: 338 EEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKRAKMAKDRKSRK-----KSSEGKK 392

Query: 88  FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
            KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 393 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 446


 Score = 59.3 bits (141), Expect = 5e-09
 Identities = 30/92 (32%), Positives = 49/92 (52%), Gaps = 2/92 (2%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++   
Sbjct: 395 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKG 452

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
           +  +  YE  MK Y   +G++ K+ K     K
Sbjct: 453 EDARREYEEAMKEYEGGRGDSSKRDKSKKKKK 484


>Q08945 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
           (RECOMBINATION SIGNAL
           Length = 709
           
 Score = 73.0 bits (176), Expect = 4e-13
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 5/114 (4%)

Query: 28  KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
           ++  D +  F   +   S   +  S +++ K + + KA  A+  +  K     K    KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 540

Query: 88  FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
            KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 594


 Score = 62.1 bits (148), Expect = 8e-10
 Identities = 32/92 (34%), Positives = 51/92 (54%), Gaps = 2/92 (2%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
           +  +  YE+ MK Y   +GE+ K+ K     K
Sbjct: 601 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK 632


>P26586 HIGH MOBILITY GROUP PROTEIN HOMOLOG TDP-1.
           Length = 271
           
 Score = 68.7 bits (165), Expect = 8e-12
 Identities = 47/145 (32%), Positives = 70/145 (47%), Gaps = 14/145 (9%)

Query: 5   PKKP----RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           PKKP    +  +SSY  FV   REE K K+P   +  +   +   + W   S   K  + 
Sbjct: 111 PKKPADYPKPAVSSYLLFVADQREELKAKNP--GMQNTAILQTLGKMWSDASDDVKEHYR 168

Query: 61  DMAKADKARYEREMKTYIPPKGETK----KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 116
             A+ DKAR+ RE+  Y    G+      K  KD NAPKR  ++F  F S++R K    H
Sbjct: 169 KKAEEDKARFRREVDEYKRQGGKEYGRGGKIKKDSNAPKRAMTSFMFFSSDFRSK----H 224

Query: 117 PGLSIGDVAKKLGEMWNNTAADDKQ 141
             LSI +++K  G  W     ++++
Sbjct: 225 SDLSIVEMSKAAGAAWKELGPEERK 249


 Score = 51.5 bits (121), Expect = 1e-06
 Identities = 27/73 (36%), Positives = 40/73 (53%), Gaps = 6/73 (8%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K D   P+  M+S+ FF      + + KH D S+   E SK     WK +  +E+  +E+
Sbjct: 200 KKDSNAPKRAMTSFMFF----SSDFRSKHSDLSI--VEMSKAAGAAWKELGPEERKVYEE 253

Query: 62  MAKADKARYEREM 74
           MA+ DK RY+REM
Sbjct: 254 MAEKDKERYKREM 266


 Score = 48.4 bits (113), Expect = 1e-05
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 3/127 (2%)

Query: 39  EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 98
           EF K+     K   A +    +   +A  A  E   KT    K  T+K  K  + PK   
Sbjct: 66  EFKKQLELALKEKDASKSSGGKGSKRARSAGAEAPSKT---KKEMTEKPKKPADYPKPAV 122

Query: 99  SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDI 158
           S++ LF ++ R ++K ++PG+    + + LG+MW++ + D K+               ++
Sbjct: 123 SSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHYRKKAEEDKARFRREV 182

Query: 159 AAYRAKG 165
             Y+ +G
Sbjct: 183 DEYKRQG 189


>P11632 NONHISTONE CHROMOSOMAL PROTEIN 6A.
           Length = 93
           
 Score = 68.3 bits (164), Expect = 1e-11
 Identities = 32/69 (46%), Positives = 42/69 (60%)

Query: 74  MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 133
           M T   PK  T +K KDPNAPKR  SA+  F +E R  ++ E+P ++ G V KKLGE W 
Sbjct: 1   MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWK 60

Query: 134 NTAADDKQP 142
               ++KQP
Sbjct: 61  ALTPEEKQP 69


 Score = 62.8 bits (150), Expect = 5e-10
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
          K DP  P+  +S+Y FF    R+  + ++PD  + F +  KK  E+WK ++ +EK  +E 
Sbjct: 15 KKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEA 72

Query: 62 MAKADKARYEREMKTY 77
           A+ADK RYE E + Y
Sbjct: 73 KAQADKKRYESEKELY 88


>Q04678 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
           (RECOMBINATION SIGNAL
           Length = 669
           
 Score = 67.1 bits (161), Expect = 2e-11
 Identities = 29/56 (51%), Positives = 40/56 (70%)

Query: 86  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           KK KDPN PKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 500 KKGKDPNVPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSKEKKE 555


 Score = 59.3 bits (141), Expect = 5e-09
 Identities = 38/116 (32%), Positives = 58/116 (49%), Gaps = 12/116 (10%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 504 DPNVPKRPMSAYMLWLNANREKIKSDHPGISI--TDLSKKAGELWKAMSKEKKEEWDRKA 561

Query: 64  KADKARYEREMKTY-IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 118
           +  K  YE+ MK Y +  K E+ K  +     K+          E + K KGE  G
Sbjct: 562 EDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKK---------QEKQMKGKGEKKG 608


>P27347 DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN).
           Length = 157
           
 Score = 66.3 bits (159), Expect = 4e-11
 Identities = 41/110 (37%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 53  AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 112
           AK KG     AKAD     +      P KG   K  KDPN PKR PSAFF+F  E+R + 
Sbjct: 4   AKSKGA----AKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 59

Query: 113 KGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAY 161
           K ++P   S+  V K  G+ W + +  DK P               IAAY
Sbjct: 60  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAY 109


 Score = 46.9 bits (109), Expect = 3e-05
 Identities = 27/88 (30%), Positives = 47/88 (52%), Gaps = 3/88 (3%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+E K+K+P  + + +   K   +RWK++S  +K  +  +A
Sbjct: 37  DPNKPKRAPSAFFVFMEEFRKEFKEKNP-KNKSVAAVGKAAGDRWKSLSESDKAPY--VA 93

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDP 91
           KA+K + E         KGE+    K P
Sbjct: 94  KANKLKLEYNKAIAAYNKGESTAAKKAP 121


>P11633 NONHISTONE CHROMOSOMAL PROTEIN 6B.
           Length = 99
           
 Score = 64.8 bits (155), Expect = 1e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 72  REMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEM 131
           +E K    PK  T ++ KDPNAPKR  SA+  F +E R  ++ E+P ++ G V + LGE 
Sbjct: 5   KEAKQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGER 64

Query: 132 WNNTAADDKQP 142
           W    A++KQP
Sbjct: 65  WKALTAEEKQP 75


 Score = 62.5 bits (149), Expect = 6e-10
 Identities = 30/76 (39%), Positives = 45/76 (58%), Gaps = 2/76 (2%)

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
          K DP  P+  +S+Y FF    R+  + ++PD  V F +  +   ERWK ++A+EK  +E 
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWKALTAEEKQPYES 78

Query: 62 MAKADKARYEREMKTY 77
           A+ADK RYE E + Y
Sbjct: 79 KAQADKKRYESEKELY 94


>P40620 HMG1/2-LIKE PROTEIN.
           Length = 149
           
 Score = 64.0 bits (153), Expect = 2e-10
 Identities = 36/93 (38%), Positives = 49/93 (51%), Gaps = 6/93 (6%)

Query: 79  PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAA 137
           P KG   K+ KDPN PKRPPSAFF+F +++R + K +HP   S+  V K  GE W + + 
Sbjct: 33  PAKG---KEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSE 89

Query: 138 DDKQPXXXXXXXXXXXXXXDIAAYRAK--GKPD 168
           ++K P               + AY  K  GK D
Sbjct: 90  EEKAPYVDRALKKKEEYEITLQAYNKKLEGKDD 122


 Score = 56.2 bits (133), Expect = 4e-08
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F+   RE++KK HP+ + + +   K C E WK++S +EK  + D A
Sbjct: 41  DPNKPKRPPSAFFVFMADFREQYKKDHPN-NKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99

Query: 64  KADKARYEREMKTY 77
              K  YE  ++ Y
Sbjct: 100 LKKKEEYEITLQAY 113


>P40619 HMG1/2-LIKE PROTEIN.
           Length = 144
           
 Score = 63.2 bits (151), Expect = 3e-10
 Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQ 141
           +TKK  KDPN PKRPPSAFF+F  ++R   K +HP   S+  V K  G+ W    A +K 
Sbjct: 25  KTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKA 84

Query: 142 PXXXXXXXXXXXXXXDIAAYRAK 164
           P              ++ AY  K
Sbjct: 85  PFISKAEKRKQEYEKNLQAYNKK 107


 Score = 50.8 bits (119), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+ +K+KHP+ + + +   K   ++WK ++A EK  F   A
Sbjct: 32  DPNKPKRPPSAFFVFMEDFRKTYKEKHPN-NKSVAVVGKAGGDKWKQLTAAEKAPFISKA 90

Query: 64  KADKARYEREMKTY 77
           +  K  YE+ ++ Y
Sbjct: 91  EKRKQEYEKNLQAY 104


>P40621 HMG1/2-LIKE PROTEIN.
           Length = 161
           
 Score = 61.7 bits (147), Expect = 1e-09
 Identities = 41/111 (36%), Positives = 52/111 (45%), Gaps = 6/111 (5%)

Query: 53  AKEKGKFEDMAKADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
           AK KG     AKAD     +      P  KG+  K  KDPN PKR PSAFF+F  E+R +
Sbjct: 4   AKSKGA----AKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 59

Query: 112 IKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAY 161
            K ++P   S+  V K  GE W + +  +K P               IAAY
Sbjct: 60  FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAY 110


 Score = 47.6 bits (111), Expect = 2e-05
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F+   REE K+K+P  + + +   K   ERWK++S  EK  +   A
Sbjct: 38  DPNKPKRAPSAFFVFMGEFREEFKQKNP-KNKSVAAVGKAAGERWKSLSESEKAPYVAKA 96

Query: 64  KADKARYEREMKTYIPPKGET 84
              K  Y + +  Y   KGE+
Sbjct: 97  NKLKGEYNKAIAAY--NKGES 115


>P41848 PROBABLE STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
           Length = 697
           
 Score = 59.3 bits (141), Expect = 5e-09
 Identities = 35/108 (32%), Positives = 53/108 (48%), Gaps = 7/108 (6%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+   S+Y  +    R E K+     +    + +KK   +WKTMS+ +K K+E+ A
Sbjct: 552 DPNAPKRATSAYMQWFLASRNELKEDGDSVA----DVAKKGGAKWKTMSSDDKKKWEEKA 607

Query: 64  KADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEY 108
           + DK+RYE+EMK Y    PP   +K      +     PS+      EY
Sbjct: 608 EEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEY 655


 Score = 56.2 bits (133), Expect = 4e-08
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 52  SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
           S + KG+ ++  +  + R ++E        G+  KK KDPNAPKR  SA+  +    R +
Sbjct: 522 SKRRKGEPKEKREKKEKREKKE--------GKKGKKDKDPNAPKRATSAYMQWFLASRNE 573

Query: 112 IKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKP 167
           +K +  G S+ DVAKK G  W   ++DDK+               ++  YR  G P
Sbjct: 574 LKED--GDSVADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPP 627


>Q02486 ARS-BINDING FACTOR 2 PRECURSOR.
           Length = 183
           
 Score = 59.3 bits (141), Expect = 5e-09
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 16/133 (12%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  PK+P    S+Y  ++Q  R +  K++P  ++  +E SK   E+W+ + A  K K+  
Sbjct: 40  KQGPKRPT---SAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYIS 94

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             K   + Y++            KK+F +   PK+P   F  + +E R ++  +HP  S 
Sbjct: 95  ERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQ 143

Query: 122 GDVAKKLGEMWNN 134
            D+ K +G+ W +
Sbjct: 144 LDLMKIIGDKWQS 156


 Score = 46.5 bits (108), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 30/48 (61%)

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           PKRP SA+FL+  ++R +   E+P L   +++K  GE W N  AD K+
Sbjct: 43  PKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKE 90


>Q05344 SINGLE-STRAND RECOGNITION PROTEIN (SSRP) (CHORION-FACTOR 5).
           Length = 723
           
 Score = 58.9 bits (140), Expect = 7e-09
 Identities = 35/101 (34%), Positives = 53/101 (51%), Gaps = 7/101 (6%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K D  KP+   +++  ++   RE +K+++P   V  +E +KK  E WK +  K+K K+ED
Sbjct: 549 KKDSGKPKRATTAFMLWLNDTRESYKRENPGIKV--TEIAKKGGEMWKEL--KDKSKWED 604

Query: 62  MAKADKARYEREMKTYIPPKG---ETKKKFKDPNAPKRPPS 99
            A  DK RY  EM+ Y P  G   + +K  K     K  PS
Sbjct: 605 AAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPS 645


 Score = 55.8 bits (132), Expect = 6e-08
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 15/97 (15%)

Query: 54  KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 113
           K++ K E   K +K   E+E       K  +KKK KD   PKR  +AF L+ ++ R   K
Sbjct: 521 KKEKKSEKKEKKEKKHKEKERT-----KKPSKKK-KDSGKPKRATTAFMLWLNDTRESYK 574

Query: 114 GEHPGLSIGDVAKKLGEM---------WNNTAADDKQ 141
            E+PG+ + ++AKK GEM         W + AA DKQ
Sbjct: 575 RENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQ 611


>P11873 NONHISTONE CHROMOSOMAL PROTEIN LG-1.
          Length = 100
          
 Score = 58.6 bits (139), Expect = 9e-09
 Identities = 28/85 (32%), Positives = 51/85 (59%), Gaps = 2/85 (2%)

Query: 5  PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
          P  P+  +S++  F Q   E+ KK++P+A +  +E +   +E+WK +  KEK K+E +  
Sbjct: 9  PAPPKRPLSAFFLFKQHNYEQVKKENPNAKI--TELTSMIAEKWKAVGEKEKKKYETLQS 66

Query: 65 ADKARYEREMKTYIPPKGETKKKFK 89
            KA+YE++M+ Y    G+ +K+ K
Sbjct: 67 EAKAKYEKDMQAYEKKYGKPEKQKK 91


 Score = 46.9 bits (109), Expect = 3e-05
 Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 1/79 (1%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXX 150
           P  PKRP SAFFLF      ++K E+P   I ++   + E W      +K+         
Sbjct: 9   PAPPKRPLSAFFLFKQHNYEQVKKENPNAKITELTSMIAEKWKAVGEKEKKKYETLQSEA 68

Query: 151 XXXXXXDIAAYRAK-GKPD 168
                 D+ AY  K GKP+
Sbjct: 69  KAKYEKDMQAYEKKYGKPE 87


>P33417 INTRASTRAND CROSSLINK RECOGNITION PROTEIN
           (STRUCTURE-SPECIFIC
           Length = 597
           
 Score = 57.8 bits (137), Expect = 2e-08
 Identities = 37/131 (28%), Positives = 59/131 (44%), Gaps = 16/131 (12%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  PK+P    S+Y  F  + R E  ++ P+A V   E SK  S RWK ++  +K  F +
Sbjct: 358 KQGPKRPS---SAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYE 412

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             + +  +Y              +  ++    PKRP   F  F  E RP +  E+P   +
Sbjct: 413 EFRTNWEKYR-----------VVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGL 461

Query: 122 GDVAKKLGEMW 132
            ++ K +GE W
Sbjct: 462 IEITKIIGERW 472


 Score = 39.5 bits (90), Expect = 0.005
 Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 1/60 (1%)

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           E +K+ K    PKRP SA+FLF    R ++  + P   + +++K     W     D K+P
Sbjct: 351 ERRKQLKK-QGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKP 409


 Score = 29.7 bits (65), Expect = 4.2
 Identities = 18/67 (26%), Positives = 31/67 (45%), Gaps = 5/67 (7%)

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PK+P G    +  F Q  R    K++PD  +   E +K   ERW+ +   +K ++ +  K
Sbjct: 434 PKRPSGP---FIQFTQEIRPTVVKENPDKGL--IEITKIIGERWRELDPAKKAEYTETYK 488

Query: 65  ADKARYE 71
                +E
Sbjct: 489 KRLKEWE 495


>P40625 HIGH-MOBILITY-GROUP PROTEIN (NONHISTONE CHROMOSOMAL
          PROTEIN).
          Length = 99
          
 Score = 56.6 bits (134), Expect = 3e-08
 Identities = 28/91 (30%), Positives = 54/91 (58%), Gaps = 2/91 (2%)

Query: 5  PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
          P  P+  +S++  F Q   ++ KK++P+A +  +E +   +E+WK ++ KEK K+E + +
Sbjct: 8  PAPPKRPLSAFFLFKQHNYDQVKKENPNAKI--TELTSMIAEKWKHVTEKEKKKYEGLQQ 65

Query: 65 ADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            KA+YE++M+ Y    G+ +K  K   + K
Sbjct: 66 EAKAKYEKDMQAYEKKYGKPEKVKKIKKSKK 96


 Score = 48.4 bits (113), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 38/85 (43%), Gaps = 1/85 (1%)

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXX 144
           K K   P  PKRP SAFFLF      ++K E+P   I ++   + E W +    +K+   
Sbjct: 2   KVKDDKPAPPKRPLSAFFLFKQHNYDQVKKENPNAKITELTSMIAEKWKHVTEKEKKKYE 61

Query: 145 XXXXXXXXXXXXDIAAYRAK-GKPD 168
                       D+ AY  K GKP+
Sbjct: 62  GLQQEAKAKYEKDMQAYEKKYGKPE 86


>Q05153 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 HOMOLOG (HMG
           PROTEIN).
           Length = 644
           
 Score = 56.2 bits (133), Expect = 4e-08
 Identities = 36/92 (39%), Positives = 46/92 (49%), Gaps = 14/92 (15%)

Query: 53  AKEKGKFEDMAKADKARYEREMKTY--IPPKGET------------KKKFKDPNAPKRPP 98
           A E G  E   K+ K   ++E  +   +PPK +T             KK KDPNAPKR  
Sbjct: 507 ASEGGVGEIKEKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAM 566

Query: 99  SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGE 130
           S F  F    R  IK EHPG++ G+V K LG+
Sbjct: 567 SGFMFFSQMERDNIKKEHPGIAFGEVGKVLGD 598


 Score = 44.1 bits (102), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  MS + FF Q  R+  KK+HP   + F E  K   ++        K   + 
Sbjct: 556 KKDPNAPKRAMSGFMFFSQMERDNIKKEHP--GIAFGEVGKVLGDKCVKCLLMIKSHMKP 613

Query: 62  MAKADKARYEREMKTYIPPK 81
             + DK RY+ E+  Y  P+
Sbjct: 614 RLQVDKQRYKDEISDYKNPQ 633


>P26585 HMG1/2-LIKE PROTEIN (SB11 PROTEIN).
           Length = 152
           
 Score = 56.2 bits (133), Expect = 4e-08
 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 86  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXX 144
           K  KDPN PKRPPSAFF+F  E+R     EHP   ++  V K  G  W   +  +K P  
Sbjct: 36  KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYV 95

Query: 145 XXXXXXXXXXXXDIAAYRAK 164
                       ++ AY  K
Sbjct: 96  AKSEKRKVEYEKNMRAYNKK 115


 Score = 51.2 bits (120), Expect = 1e-06
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 1   GKG----DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 56
           GKG    DP KP+   S++  F++  R+   K+HP+     S   K    +WKTMS  EK
Sbjct: 33  GKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKA-VSAVGKAAGAKWKTMSDAEK 91

Query: 57  GKFEDMAKADKARYEREMKTYIPPKGE 83
             +   ++  K  YE+ M+ Y   + E
Sbjct: 92  APYVAKSEKRKVEYEKNMRAYNKKQAE 118


>P40627 HIGH-MOBILITY-GROUP PROTEIN C (FRAGMENT).
          Length = 92
          
 Score = 56.2 bits (133), Expect = 4e-08
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 5  PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
          P  P+  +S++  F Q   E+ KK++P+A +  +E +   +E+WK +  KEK K+E +  
Sbjct: 1  PAPPKRPLSAFFLFKQHNYEQVKKENPNAKI--TELTSMIAEKWKAVGEKEKKKYETLQS 58

Query: 65 ADKARYEREMKTYIPPKGETKKKFK 89
            KA+YE+ ++ Y    G+ +K+ K
Sbjct: 59 EAKAKYEKALQAYEKKYGKPEKQKK 83


 Score = 44.1 bits (102), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 34/79 (42%), Gaps = 1/79 (1%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXX 150
           P  PKRP SAFFLF      ++K E+P   I ++   + E W      +K+         
Sbjct: 1   PAPPKRPLSAFFLFKQHNYEQVKKENPNAKITELTSMIAEKWKAVGEKEKKKYETLQSEA 60

Query: 151 XXXXXXDIAAYRAK-GKPD 168
                  + AY  K GKP+
Sbjct: 61  KAKYEKALQAYEKKYGKPE 79


>P40628 HIGH MOBILITY GROUP PROTEIN HOMOLOG.
           Length = 221
           
 Score = 55.4 bits (131), Expect = 8e-08
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)

Query: 8   PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 67
           P+   SSY FF Q  R     + PD   N  +      ++W  +  +++ K++ MA  D+
Sbjct: 54  PKRNKSSYLFFCQEIRPSIVAEMPDIKPN--QVMVHLGKKWSELPLEDRKKYDVMAVEDR 111

Query: 68  ARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKK 127
            RY            E  KK   P       S +  FC++ R KIK + P L+  D+  K
Sbjct: 112 KRYLASK--------EANKKLNKPVKI----SGYLQFCADER-KIKLKFPDLTTKDITAK 158

Query: 128 LGEMWNNTAADDKQ 141
           LG MWN+   ++ Q
Sbjct: 159 LGGMWNDYKKNNPQ 172


 Score = 43.0 bits (99), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 92  NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           N PKR  S++  FC E RP I  E P +    V   LG+ W+    +D++
Sbjct: 52  NVPKRNKSSYLFFCQEIRPSIVAEMPDIKPNQVMVHLGKKWSELPLEDRK 101


>P40632 HIGH MOBILITY GROUP PROTEIN HOMOLOG NHP1.
          Length = 97
          
 Score = 55.0 bits (130), Expect = 1e-07
 Identities = 27/80 (33%), Positives = 41/80 (50%)

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
          K DP  P+  +SSY FF +  R E   ++P+ + + +   K     W  +S +EK  +E 
Sbjct: 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYER 76

Query: 62 MAKADKARYEREMKTYIPPK 81
          M+  D+ RYERE   Y   K
Sbjct: 77 MSDEDRVRYEREKAEYAQRK 96


 Score = 47.6 bits (111), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 36/60 (59%), Gaps = 2/60 (3%)

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQP 142
           +K  KDPNAPKR  S++  F  E R +I  E+P ++  +  + K +G  WN  + ++K+P
Sbjct: 14  RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 73


>P25977;P25978 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING
           FACTOR 1) (UBF-1).
           Length = 764
           
 Score = 53.9 bits (127), Expect = 2e-07
 Identities = 35/126 (27%), Positives = 53/126 (41%), Gaps = 29/126 (23%)

Query: 44  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
           CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 387

Query: 89  KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
             P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 388 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 447

Query: 135 TAADDK 140
            +   K
Sbjct: 448 LSEKKK 453


 Score = 52.3 bits (123), Expect = 7e-07
 Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 18/143 (12%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 400 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 457

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
               A KA+ ER+      P GE + + K P +PKR           ++  + G++    
Sbjct: 458 AREAALKAQSERK------PGGEREDRGKLPESPKRAEEI-------WQQSVIGDYLARF 504

Query: 121 IGDVAKKLGEM---WNNTAADDK 140
             D  K L  M   WNN    +K
Sbjct: 505 KNDRVKALKAMEMTWNNMEKKEK 527


 Score = 44.5 bits (103), Expect = 1e-04
 Identities = 32/135 (23%), Positives = 61/135 (44%), Gaps = 8/135 (5%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P  P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 62  MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 118
             + +K  +ER +  +    P   +  KK   P  PK P   ++    +   K++   P 
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220

Query: 119 LSIGDVAKKLGEMWN 133
            +  +V   LG+ W+
Sbjct: 221 ATTKEVKDSLGKQWS 235


 Score = 41.4 bits (95), Expect = 0.001
 Identities = 29/97 (29%), Positives = 41/97 (41%), Gaps = 5/97 (5%)

Query: 48  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
           W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 519 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 578

Query: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             E      GE   L + +   ++G  W   +   K+
Sbjct: 579 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 613


 Score = 37.9 bits (86), Expect = 0.014
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 58  VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 150


 Score = 35.6 bits (80), Expect = 0.073
 Identities = 27/109 (24%), Positives = 46/109 (41%), Gaps = 20/109 (18%)

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP--- 79
           ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 211 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 268

Query: 80  --------------PKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIK 113
                          K E + K K D    K PP+++ L+C+E    +K
Sbjct: 269 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 317


>P17480 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR 1)
           (UBF-1)
           Length = 764
           
 Score = 53.9 bits (127), Expect = 2e-07
 Identities = 35/126 (27%), Positives = 53/126 (41%), Gaps = 29/126 (23%)

Query: 44  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
           CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 387

Query: 89  KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
             P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 388 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 447

Query: 135 TAADDK 140
            +   K
Sbjct: 448 LSEKKK 453


 Score = 53.1 bits (125), Expect = 4e-07
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 18/143 (12%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 400 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 457

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
               A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 458 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 504

Query: 121 IGDVAKKLGEM---WNNTAADDK 140
             D  K L  M   WNN    +K
Sbjct: 505 KNDRVKALKAMEMTWNNMEKKEK 527


 Score = 44.5 bits (103), Expect = 1e-04
 Identities = 32/135 (23%), Positives = 61/135 (44%), Gaps = 8/135 (5%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P  P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 62  MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 118
             + +K  +ER +  +    P   +  KK   P  PK P   ++    +   K++   P 
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220

Query: 119 LSIGDVAKKLGEMWN 133
            +  +V   LG+ W+
Sbjct: 221 ATTKEVKDSLGKQWS 235


 Score = 41.4 bits (95), Expect = 0.001
 Identities = 29/97 (29%), Positives = 41/97 (41%), Gaps = 5/97 (5%)

Query: 48  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
           W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 519 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 578

Query: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             E      GE   L + +   ++G  W   +   K+
Sbjct: 579 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 613


 Score = 37.9 bits (86), Expect = 0.014
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 58  VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 150


 Score = 35.6 bits (80), Expect = 0.073
 Identities = 27/109 (24%), Positives = 46/109 (41%), Gaps = 20/109 (18%)

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP--- 79
           ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 211 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 268

Query: 80  --------------PKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIK 113
                          K E + K K D    K PP+++ L+C+E    +K
Sbjct: 269 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 317


>P25976 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR 1)
           (UBF-1).
           Length = 765
           
 Score = 53.5 bits (126), Expect = 3e-07
 Identities = 35/126 (27%), Positives = 52/126 (40%), Gaps = 29/126 (23%)

Query: 44  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
           CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 387

Query: 89  KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
             P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 388 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 447

Query: 135 TAADDK 140
                K
Sbjct: 448 LTEKKK 453


 Score = 51.2 bits (120), Expect = 1e-06
 Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 18/143 (12%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  ++ K+K K++
Sbjct: 400 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLTEKKKAKYK 457

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
               A KA+ ER+      P GE + + K P +PKR           ++  + G++    
Sbjct: 458 AREAALKAQSERK------PGGEREDRGKLPESPKRAEEI-------WQQSVIGDYLARF 504

Query: 121 IGDVAKKLGEM---WNNTAADDK 140
             D  K L  M   WNN    +K
Sbjct: 505 KNDRVKALKAMEMTWNNMEKKEK 527


 Score = 44.5 bits (103), Expect = 1e-04
 Identities = 32/135 (23%), Positives = 61/135 (44%), Gaps = 8/135 (5%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P  P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 62  MAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 118
             + +K  +ER +  +    P   +  KK   P  PK P   ++    +   K++   P 
Sbjct: 164 DFQREKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKVYLKVR---PD 220

Query: 119 LSIGDVAKKLGEMWN 133
            +  +V   LG+ W+
Sbjct: 221 ATTKEVKDSLGKQWS 235


 Score = 41.4 bits (95), Expect = 0.001
 Identities = 29/97 (29%), Positives = 41/97 (41%), Gaps = 5/97 (5%)

Query: 48  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
           W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 519 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 578

Query: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             E      GE   L + +   ++G  W   +   K+
Sbjct: 579 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 613


 Score = 37.9 bits (86), Expect = 0.014
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 58  VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 111

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 150


 Score = 34.4 bits (77), Expect = 0.16
 Identities = 27/109 (24%), Positives = 45/109 (40%), Gaps = 20/109 (18%)

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP--- 79
           ++ + K  PDA+    E      ++W  +S K+  K+   A   +  YE  M+ YI    
Sbjct: 211 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKTLKWIHKALEQRKEYEEIMRDYIQKHP 268

Query: 80  --------------PKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIK 113
                          K E + K K D    K PP+++ L+C+E    +K
Sbjct: 269 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 317


>P54277 PMS1 PROTEIN HOMOLOG 1 (DNA MISMATCH REPAIR PROTEIN PMS1).
           Length = 932
           
 Score = 50.4 bits (118), Expect = 3e-06
 Identities = 35/98 (35%), Positives = 53/98 (53%), Gaps = 7/98 (7%)

Query: 6   KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKA 65
           KKP   MS+ A FVQ  R +   ++P  S+   + + +  E WKT+S +EK K+E+ A  
Sbjct: 572 KKP---MSASALFVQDHRPQFLIENPKTSLE--DATLQIEELWKTLSEEEKLKYEEKATK 626

Query: 66  DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 103
           D  RY  +MK  I  + E++   KD     +P SA+ L
Sbjct: 627 DLERYNSQMKRAI--EQESQMSLKDGRKKIKPTSAWNL 662


 Score = 36.0 bits (81), Expect = 0.056
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
           K+P SA  LF  ++RP+   E+P  S+ D   ++ E+W   + ++K
Sbjct: 572 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEK 617


>P40630 TESTIS-SPECIFIC HIGH MOBILITY GROUP PROTEIN (TS-HMG).
           Length = 199
           
 Score = 50.4 bits (118), Expect = 3e-06
 Identities = 45/158 (28%), Positives = 68/158 (42%), Gaps = 30/158 (18%)

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   MSSY  F      + K KHPDA +  SE  +K +  W+ +   EK  +E   K
Sbjct: 5   PKKP---MSSYLRFSTEQLPKFKAKHPDAKL--SELVRKIAALWRELPEAEKKVYEADFK 59

Query: 65  ADKARYEREMKTY---IPP-------KGETKKKFKDP-----------NAPKRPPSAFFL 103
           A+   Y+  +  Y   + P       K   +++ K               PKRP SA+ +
Sbjct: 60  AEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNI 119

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + SE   + K +    S     K + E W N + ++KQ
Sbjct: 120 YVSESFQEAKDD----SAQGKLKLVNEAWKNLSPEEKQ 153


 Score = 44.5 bits (103), Expect = 1e-04
 Identities = 25/75 (33%), Positives = 39/75 (51%), Gaps = 9/75 (12%)

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K       +      K  +E WK +S +EK  +  +
Sbjct: 108 GKPKRPR---SAYNIYVSESFQEAKDDSAQGKL------KLVNEAWKNLSPEEKQAYIQL 158

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY+ EMK++
Sbjct: 159 AKDDRIRYDNEMKSW 173


>P40622 MOBILITY GROUP PROTEIN 1A.
          Length = 114
          
 Score = 49.6 bits (116), Expect = 4e-06
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 12/100 (12%)

Query: 6  KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKA 65
          +KP+  +S+Y  ++ + RE  KK++PD  V  +E +KK  E W+ M  K+K ++E  A  
Sbjct: 3  EKPKRPLSAYMLWLNSARESIKKENPDFKV--TEIAKKGGELWRGM--KDKSEWEAKAAK 58

Query: 66 DKARYEREMKTYIPPKGE------TKKKFKDPNAPKRPPS 99
           K  YE+ MK +    G+      TKK+ K   A K+ P+
Sbjct: 59 MKEEYEKAMKEFERNGGDKSSGASTKKRGK--AAEKKKPA 96


 Score = 42.6 bits (98), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PKRP SA+ L+ +  R  IK E+P   + ++AKK GE+W
Sbjct: 5   PKRPLSAYMLWLNSARESIKKENPDFKVTEIAKKGGELW 43


>Q00059 MITOCHONDRIAL TRANSCRIPTION FACTOR 1 PRECURSOR (MTTF1).
           Length = 246
           
 Score = 48.8 bits (114), Expect = 8e-06
 Identities = 41/158 (25%), Positives = 71/158 (43%), Gaps = 30/158 (18%)

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   +SSY  F +      K ++PDA    +E  ++ ++RW+ +   +K  ++D  +
Sbjct: 50  PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 104

Query: 65  ADKARYERE--------------------MKTYIPPKGETKKK-FKDPNAPKRPPSAFFL 103
           A+   Y+ E                    M  ++  K  TKKK       PKRP SA+ +
Sbjct: 105 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 164

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + +E   + KG+ P     +  K + E W N +  +K+
Sbjct: 165 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKE 198


 Score = 42.6 bits (98), Expect = 6e-04
 Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 9/75 (12%)

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K   P   +      K   E WK +S  EK  +   
Sbjct: 153 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 203

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY  EMK++
Sbjct: 204 AKEDETRYHNEMKSW 218


 Score = 30.9 bits (68), Expect = 1.9
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 92  NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + PK+P S++  F  E  P  K ++P     ++ +++ + W       K+
Sbjct: 48  SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKK 97


>P25980 NUCLEOLAR TRANSCRIPTION FACTOR 2 (UPSTREAM BINDING FACTOR-2)
           (UBF-2).
           Length = 701
           
 Score = 47.6 bits (111), Expect = 2e-05
 Identities = 31/132 (23%), Positives = 61/132 (45%), Gaps = 2/132 (1%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P+ P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPEFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             + +K  +ER M  +     +  +  K  + P++P +   L+ +  R      H   S 
Sbjct: 164 DFQREKQDFERNMAKFREEHPDLMQNPKKSDVPEKPKTPQQLWYNHERKVYLKLHADAST 223

Query: 122 GDVAKKLGEMWN 133
            D+   LG+ W+
Sbjct: 224 KDIKDALGKQWS 235


 Score = 36.4 bits (82), Expect = 0.042
 Identities = 29/91 (31%), Positives = 42/91 (45%), Gaps = 10/91 (10%)

Query: 44  CSERWKTMSAKEKGKFEDMAKA--DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 101
           C ++W  +S  E  KF  + +   D   + R      P KG  KK  K P  PK+P + +
Sbjct: 68  CRQKWMEIS-NEVRKFRTLTELILDADEHVRH-----PYKG--KKLKKHPEFPKKPLTPY 119

Query: 102 FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           F F  E R K    HP +S  D+ K L + +
Sbjct: 120 FRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 150


 Score = 32.8 bits (73), Expect = 0.48
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 44  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 78
           CS+RWK +S KEK  +    +  K  YE E+  ++
Sbjct: 328 CSQRWKLLSQKEKDAYHKKCEQRKKDYEVELMRFL 362


 Score = 32.8 bits (73), Expect = 0.48
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 48  WKTMSAKEKGKFEDMAKADKARYEREMKTY--IPPKGETKKKFKDPNAPKRPP-SAFFLF 104
           W  M  KEK  +   A  D+ RYERE+      P      KK K    PK+ P + +  F
Sbjct: 459 WLNMEKKEKIMWIKKAAEDQKRYERELSDMRSTPAPTTAGKKVKFLGEPKKAPMNGYQKF 518

Query: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
             E      GE   L + +   ++G  W+  +   K
Sbjct: 519 SQELLS--NGELNHLPLKERMVEIGSRWHRISPTQK 552


 Score = 32.8 bits (73), Expect = 0.48
 Identities = 25/109 (22%), Positives = 46/109 (41%), Gaps = 20/109 (18%)

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
           R+ + K H DAS    +      ++W  +  K++ K+   A   + +YE  M+ Y+    
Sbjct: 211 RKVYLKLHADASTK--DIKDALGKQWSQLPDKKRLKWIHKALEQRKQYEGVMREYMQKHP 268

Query: 81  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                          K E + K K    P K PP+++ ++C+E    +K
Sbjct: 269 ELNITEEGITRSTLTKAERQLKDKFDGRPTKPPPNSYSMYCAELMANMK 317


>P25979 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR-1)
           (UBF-1).
           Length = 677
           
 Score = 47.6 bits (111), Expect = 2e-05
 Identities = 31/132 (23%), Positives = 61/132 (45%), Gaps = 2/132 (1%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P+ P+  ++ Y  F    R ++ K HP+ S    + +K  S+++K +  K+K K+  
Sbjct: 106 KKHPEFPKKPLTPYFRFFMEKRAKYAKLHPEMSN--LDLTKILSKKYKELPEKKKMKYIQ 163

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             + +K  +ER +  +     +  +  K  + P++P +   L+ +  R      H   S 
Sbjct: 164 DFQREKLEFERNLARFREEHPDLMQNPKKSDVPEKPKTPQQLWYNHERKVYLKLHADAST 223

Query: 122 GDVAKKLGEMWN 133
            DV   LG+ W+
Sbjct: 224 KDVKDALGKQWS 235


 Score = 37.9 bits (86), Expect = 0.014
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 8/109 (7%)

Query: 24  EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 83
           E H   +  A  N+S     C ++W  +S  E  KF  +++      + E     P KG 
Sbjct: 50  ESHLDWNKLAFKNYS--GSMCRQKWMEIS-NEVRKFRTLSELI---LDAEEHVRHPYKG- 102

Query: 84  TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
            KK  K P  PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 103 -KKLKKHPEFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 150


 Score = 33.6 bits (75), Expect = 0.28
 Identities = 28/102 (27%), Positives = 40/102 (38%), Gaps = 5/102 (4%)

Query: 42  KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY--IPPKGETKKKFKDPNAPKRPP- 98
           K     W  M  KEK  +   A  D+ RYERE+      P      KK K    PK+ P 
Sbjct: 431 KSMEGTWLNMEKKEKIMWIKKAAEDQKRYERELSDMRATPTPTTAGKKVKFLGEPKKAPM 490

Query: 99  SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
           + +  F  E      GE   L + +   ++G  W+  +   K
Sbjct: 491 NGYQKFSQELLS--NGELNHLPLKERMVEIGSRWHRISPSQK 530


 Score = 33.2 bits (74), Expect = 0.37
 Identities = 14/44 (31%), Positives = 24/44 (53%)

Query: 44  CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
           CS+RWK +S KEK  +    +  K  YE E+  ++    E +++
Sbjct: 328 CSQRWKLLSQKEKDAYNKKCEQRKKDYEVELMRFLESLPEEEQQ 371


 Score = 32.8 bits (73), Expect = 0.48
 Identities = 25/109 (22%), Positives = 47/109 (42%), Gaps = 20/109 (18%)

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
           R+ + K H DAS    +      ++W  ++ K++ K+   A   + +YE  M+ Y+    
Sbjct: 211 RKVYLKLHADASTK--DVKDALGKQWSQLTDKKRLKWIHKALEQRKQYEGIMREYMQKHP 268

Query: 81  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                          K E + K K    P K PP+++ ++C+E    +K
Sbjct: 269 ELNIAEEGITRSTLTKAERQLKDKFDGRPTKPPPNSYSMYCAELMANMK 317


>Q03435 NHP10 PROTEIN.
           Length = 203
           
 Score = 47.3 bits (110), Expect = 2e-05
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)

Query: 68  ARYEREMKTYIPPKGETKK---KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDV 124
           A +++E+ T    K +TK+   K +DPN PKRP +A+ L+C   + +I+ ++  L   DV
Sbjct: 65  ASFKQELLTKPFRKSKTKRHKVKERDPNMPKRPTNAYLLYCEMNKERIR-QNGSL---DV 120

Query: 125 AKKLGEMWNNTAADDKQP 142
            + L E W N    D++P
Sbjct: 121 TRDLAEGWKNLNEQDRKP 138


 Score = 32.8 bits (73), Expect = 0.48
 Identities = 14/74 (18%), Positives = 36/74 (47%), Gaps = 6/74 (8%)

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+   ++Y  + +  +E  ++          + ++  +E WK ++ +++  +  + 
Sbjct: 90  DPNMPKRPTNAYLLYCEMNKERIRQN------GSLDVTRDLAEGWKNLNEQDRKPYYKLY 143

Query: 64  KADKARYEREMKTY 77
             D+ RY+ EM+ Y
Sbjct: 144 SEDRERYQMEMEIY 157


>P40631 MICRONUCLEAR LINKER HISTONE POLYPROTEIN (CONTAINS: LINKER
           HISTONE
           Length = 633
           
 Score = 47.3 bits (110), Expect = 2e-05
 Identities = 39/135 (28%), Positives = 61/135 (44%), Gaps = 16/135 (11%)

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP    ++Y  FV        +K      NF   +KK    +  +S  EK + + +  
Sbjct: 13  PKKPFS--NTYQAFVL-------EKKNALGKNFD--NKKVQADYNKLSNNEKERLQKLVD 61

Query: 65  ADKARYEREMKTY---IPPKGETK--KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 119
             + +Y+ E+  Y   I  KG+ K   + K P  PK+P  +FF F  E R K   +H  L
Sbjct: 62  NAEEKYKEELFHYNNHIQGKGKQKYVPQVKVPEKPKKPIGSFFRFLEENRQKYAAKHKDL 121

Query: 120 SIGDVAKKLGEMWNN 134
           +   + K + E +NN
Sbjct: 122 TNAKILKIMSEDFNN 136


 Score = 37.9 bits (86), Expect = 0.014
 Identities = 25/94 (26%), Positives = 48/94 (50%), Gaps = 4/94 (4%)

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           P+KP+  + S+  F++  R+++  KH D  +  ++  K  SE +  +  KE   +ED  +
Sbjct: 93  PEKPKKPIGSFFRFLEENRQKYAAKHKD--LTNAKILKIMSEDFNNLPQKEVKVYEDAYQ 150

Query: 65  ADKARYEREMKTYIPPKGET--KKKFKDPNAPKR 96
            + A+Y  E K +    G+   KK+ K  N+  +
Sbjct: 151 KEYAQYLVEFKKWNEKYGQAAQKKQTKRKNSTSK 184


>Q06943 HIGH MOBILITY GROUP PROTEIN Z (HMG-Z).
           Length = 111
           
 Score = 46.1 bits (107), Expect = 5e-05
 Identities = 19/39 (48%), Positives = 29/39 (73%)

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PKRP SA+ L+ +E R +IK ++PG  + D+AK+ GE+W
Sbjct: 6   PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELW 44


 Score = 39.5 bits (90), Expect = 0.005
 Identities = 26/94 (27%), Positives = 47/94 (49%), Gaps = 10/94 (10%)

Query: 7   KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
           +P+  +S+Y  ++   RE+ KK +P + V  ++ +K+  E W+ +  K+K ++E  A   
Sbjct: 5   RPKRPLSAYMLWLNETREQIKKDNPGSKV--TDIAKRGGELWRGL--KDKTEWEQKAIKM 60

Query: 67  KARYEREMKTYIPPKGETKKKFKDPNAPKRPPSA 100
           K  Y + +K Y    G       D  APK+   A
Sbjct: 61  KEEYNKAVKEYEANGG------TDSGAPKKRKKA 88


>Q39601 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 HOMOLOG (HMG
           PROTEIN).
           Length = 639
           
 Score = 45.7 bits (106), Expect = 7e-05
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 81  KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 133
           K + +KK KDPNAPK   SAF  F    R  +K ++PG++  DV K LG+  N
Sbjct: 543 KKKKQKKKKDPNAPKSI-SAFMFFSQTERENVKKDNPGIAFTDVGKVLGDRCN 594


 Score = 43.4 bits (100), Expect = 3e-04
 Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 3/80 (3%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +S++ FF QT RE  KK +P   + F++  K   +R      ++K   + 
Sbjct: 550 KKDPNAPKS-ISAFMFFSQTERENVKKDNP--GIAFTDVGKVLGDRCNKCQLRKKHLLKQ 606

Query: 62  MAKADKARYEREMKTYIPPK 81
              ADK RY  E+  Y  P+
Sbjct: 607 RLVADKKRYTDEISNYKNPQ 626


>Q05783 HIGH MOBILITY GROUP PROTEIN D (HMG-D).
           Length = 112
           
 Score = 45.3 bits (105), Expect = 9e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PKRP SA+ L+ +  R  IK E+PG+ + +VAK+ GE+W
Sbjct: 5   PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW 43


 Score = 41.4 bits (95), Expect = 0.001
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 7  KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
          KP+  +S+Y  ++ + RE  K+++P   +  +E +K+  E W+ M  K+K ++E  A   
Sbjct: 4  KPKRPLSAYMLWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWEAKAAKA 59

Query: 67 KARYEREMKTY 77
          K  Y+R +K +
Sbjct: 60 KDDYDRAVKEF 70


>P40623 MOBILITY GROUP PROTEIN 1B.
          Length = 110
          
 Score = 44.9 bits (104), Expect = 1e-04
 Identities = 29/92 (31%), Positives = 50/92 (53%), Gaps = 6/92 (6%)

Query: 7  KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
          KP+  +S+Y  ++ + RE  K+++PD  V  +E +KK  E W+ +  K+K ++E  A   
Sbjct: 4  KPKRPLSAYMLWLNSARESIKRENPDFKV--TEVAKKGGELWRGL--KDKSEWEAKAATA 59

Query: 67 KARYEREMKTY--IPPKGETKKKFKDPNAPKR 96
          K  Y R ++ Y      G+ K K +   APK+
Sbjct: 60 KQNYIRALQEYERNGGGGDDKGKKRKGAAPKK 91


 Score = 43.0 bits (99), Expect = 4e-04
 Identities = 19/39 (48%), Positives = 26/39 (65%)

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PKRP SA+ L+ +  R  IK E+P   + +VAKK GE+W
Sbjct: 5   PKRPLSAYMLWLNSARESIKRENPDFKVTEVAKKGGELW 43


>Q10241 HYPOTHETICAL 26.3 KD PROTEIN C4G9.11C IN CHROMOSOME I.
           Length = 223
           
 Score = 43.8 bits (101), Expect = 3e-04
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 31/125 (24%)

Query: 46  ERWKTMSAKE----KGKFEDMAKADKARYEREMKTYIPPK--GETKKKFKD--------- 90
           +++K ++A E    K K ++   A+K R+   ++++ P +   E +++ K+         
Sbjct: 80  QKYKALTADEIQKYKNKLQEQFDAEKKRFMETLRSFTPTEIDSENRRRSKEAHSTGSRYY 139

Query: 91  ----PNAPKRPPSAFFLFCSEYR--PKIKGEHPGLSIGDVAKKLGE-------MWNNTAA 137
               P+ PK+P SAF LF  E R  PK++ E   L I +    L E        W   A 
Sbjct: 140 RLRHPDVPKKPSSAFILFYKELRNNPKLRQE---LGIPEAISTLVEETQNASKAWKELAE 196

Query: 138 DDKQP 142
           D K+P
Sbjct: 197 DKKKP 201


 Score = 37.1 bits (84), Expect = 0.025
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKH----PDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           PKKP    S++  F +  R   K +     P+A     E ++  S+ WK ++  +K  F 
Sbjct: 147 PKKPS---SAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFI 203

Query: 61  DMAKADKARYEREMK 75
           D +KA K +Y++ MK
Sbjct: 204 DKSKALKEQYDKFMK 218


>P40626 HIGH-MOBILITY-GROUP PROTEIN B.
          Length = 143
          
 Score = 43.8 bits (101), Expect = 3e-04
 Identities = 24/86 (27%), Positives = 41/86 (46%), Gaps = 2/86 (2%)

Query: 5  PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
          P KP  K     FF+       K++    ++   E   K SE +K +  KEK K+E+  +
Sbjct: 15 PSKP--KRPQTGFFIYKSEVFAKRRTECPTLKVPEIVSKISEEYKALPEKEKQKYEEAYR 72

Query: 65 ADKARYEREMKTYIPPKGETKKKFKD 90
           +KA Y+++   +    G+ +K  KD
Sbjct: 73 KEKATYDKQNDQWKEKYGDIEKSLKD 98


 Score = 37.9 bits (86), Expect = 0.014
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           P+ PKRP + FF++ SE   K + E P L + ++  K+ E +      +KQ
Sbjct: 15  PSKPKRPQTGFFIYKSEVFAKRRTECPTLKVPEIVSKISEEYKALPEKEKQ 65


>O00570 SOX-1 PROTEIN.
           Length = 387
           
 Score = 40.6 bits (93), Expect = 0.002
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           G     + R K    AF V +  +  K    +  ++ SE SK+    WK MS  EK  F 
Sbjct: 42  GGAKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFI 101

Query: 61  DMAKADKARYEREMKTY-IPPKGETKKKFK 89
           D AK  +A + +E   Y   P+ +TK   K
Sbjct: 102 DEAKRLRALHMKEHPDYKYRPRRKTKTLLK 131


 Score = 34.8 bits (78), Expect = 0.12
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 52  KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRP 99


>P53783 SOX-1 PROTEIN.
           Length = 391
           
 Score = 39.9 bits (91), Expect = 0.004
 Identities = 27/82 (32%), Positives = 38/82 (45%), Gaps = 1/82 (1%)

Query: 9   RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 68
           R K    AF V +  +  K    +  ++ SE SK+    WK MS  EK  F D AK  +A
Sbjct: 50  RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRA 109

Query: 69  RYEREMKTY-IPPKGETKKKFK 89
            + +E   Y   P+ +TK   K
Sbjct: 110 LHMKEHPDYKYRPRRKTKTLLK 131


 Score = 34.8 bits (78), Expect = 0.12
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 52  KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRP 99


>P55863 TRANSCRIPTION FACTOR SOX-3.
           Length = 309
           
 Score = 39.5 bits (90), Expect = 0.005
 Identities = 19/63 (30%), Positives = 33/63 (52%)

Query: 80  PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 139
           P G+      D +  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  D
Sbjct: 26  PGGKGNASTLDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDSD 85

Query: 140 KQP 142
           K+P
Sbjct: 86  KRP 88


 Score = 36.4 bits (82), Expect = 0.042
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 1   GKGDPK---KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 57
           GKG+     + R K    AF V +  +  K    +  ++ SE SK+    WK +S  +K 
Sbjct: 28  GKGNASTLDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDSDKR 87

Query: 58  KFEDMAKADKARYEREMKTY-IPPKGETKKKFK 89
            F D AK  +A + ++   Y   P+ +TK   K
Sbjct: 88  PFIDEAKRLRAVHMKDYPDYKYRPRRKTKTLLK 120


>Q03257 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 240
           
 Score = 39.1 bits (89), Expect = 0.006
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 81  KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
           +GE  ++    N  KRP +AF ++  E R K+  E+P L   +++K+LG  W      +K
Sbjct: 53  RGENVRE-SSQNHVKRPMNAFIVWSRERRRKVALENPKLQNSEISKQLGYEWKRLTDAEK 111

Query: 141 QP 142
           +P
Sbjct: 112 RP 113


>Q03255 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 229
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 17/48 (35%), Positives = 28/48 (57%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 55  KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 102


>Q27949 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 229
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 17/48 (35%), Positives = 28/48 (57%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 55  KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 102


>P54231 TRANSCRIPTION FACTOR SOX-2.
           Length = 320
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 27/89 (30%), Positives = 42/89 (46%), Gaps = 3/89 (3%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P + +  M+  AF V +  +  K    +  ++ SE SK+    WK +S  EK  F D
Sbjct: 38  KNSPDRVKRPMN--AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID 95

Query: 62  MAKADKARYEREMKTY-IPPKGETKKKFK 89
            AK  +A + +E   Y   P+ +TK   K
Sbjct: 96  EAKRLRALHMKEHPDYKYRPRRKTKTLMK 124


 Score = 37.1 bits (84), Expect = 0.025
 Identities = 16/52 (30%), Positives = 30/52 (56%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           P+  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 41  PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 92


>P48432 TRANSCRIPTION FACTOR SOX-2.
           Length = 318
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 27/89 (30%), Positives = 42/89 (46%), Gaps = 3/89 (3%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P + +  M+  AF V +  +  K    +  ++ SE SK+    WK +S  EK  F D
Sbjct: 37  KNSPDRVKRPMN--AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID 94

Query: 62  MAKADKARYEREMKTY-IPPKGETKKKFK 89
            AK  +A + +E   Y   P+ +TK   K
Sbjct: 95  EAKRLRALHMKEHPDYKYRPRRKTKTLMK 123


 Score = 37.1 bits (84), Expect = 0.025
 Identities = 16/52 (30%), Positives = 30/52 (56%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           P+  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 40  PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 91


>P48431;Q14537 TRANSCRIPTION FACTOR SOX-2.
           Length = 317
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 27/89 (30%), Positives = 42/89 (46%), Gaps = 3/89 (3%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P + +  M+  AF V +  +  K    +  ++ SE SK+    WK +S  EK  F D
Sbjct: 35  KNSPDRVKRPMN--AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFID 92

Query: 62  MAKADKARYEREMKTY-IPPKGETKKKFK 89
            AK  +A + +E   Y   P+ +TK   K
Sbjct: 93  EAKRLRALHMKEHPDYKYRPRRKTKTLMK 121


 Score = 37.1 bits (84), Expect = 0.025
 Identities = 16/52 (30%), Positives = 30/52 (56%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           P+  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 38  PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRP 89


>P48430 TRANSCRIPTION FACTOR SOX-2.
           Length = 315
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 27/89 (30%), Positives = 42/89 (46%), Gaps = 3/89 (3%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  P + +  M+  AF V +  +  K    +  ++ SE SK+    WK +S  EK  F D
Sbjct: 33  KNSPDRVKRPMN--AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFID 90

Query: 62  MAKADKARYEREMKTY-IPPKGETKKKFK 89
            AK  +A + +E   Y   P+ +TK   K
Sbjct: 91  EAKRLRALHMKEHPDYKYRPRRKTKTLMK 119


 Score = 36.7 bits (83), Expect = 0.032
 Identities = 16/52 (30%), Positives = 30/52 (56%)

Query: 91  PNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           P+  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 36  PDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRP 87


>P36981 MATING TYPE PROTEIN A-1 (MT A-1) (LOWER CASE "A").
           Length = 382
           
 Score = 38.7 bits (88), Expect = 0.008
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 9/60 (15%)

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           E +KK K P    RPP+A+ L+  ++  +I+ ++PGL   +++  +G MW      D+QP
Sbjct: 109 EQQKKAKIP----RPPNAYILYRKDHHREIREQNPGLHNNEISVIVGNMWR-----DEQP 159


>O09141;O08518 TRANSCRIPTION FACTOR SOX-21 (TRANSCRIPTION FACTOR
           SOX-M) (FRAGMENT).
           Length = 533
           
 Score = 38.3 bits (87), Expect = 0.011
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K     KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 180 TLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 239

Query: 136 AADDKQP 142
              DK+P
Sbjct: 240 NESDKRP 246


>P47792 TRANSCRIPTION FACTOR SOX-19.
           Length = 319
           
 Score = 38.3 bits (87), Expect = 0.011
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 16  AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75
           AF V +  +  K    +  ++ SE SK+    WK ++  EK  F D AK  +A + +E  
Sbjct: 59  AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRALHMKEYP 118

Query: 76  TY-IPPKGETKKKFKDPNAPKRPPSA 100
            Y   P+ +     KD  A K P SA
Sbjct: 119 DYKYKPRRKQPVLKKDNPAAKYPLSA 144


 Score = 37.1 bits (84), Expect = 0.025
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 24/96 (25%)

Query: 71  EREMKTYIPP-----KGETK-KKFKDPNAPK------------------RPPSAFFLFCS 106
           E +MK+ +PP     +G T+ K++ DP + K                  RP +AF ++  
Sbjct: 6   EHDMKSAVPPTHQSAQGMTQLKRWSDPRSAKPACQQQQQQSRDPMDKVKRPMNAFMVWSR 65

Query: 107 EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
             R K+  E+P +   +++K+LG  W      +K+P
Sbjct: 66  GQRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRP 101


>Q03256 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 240
           
 Score = 37.9 bits (86), Expect = 0.014
 Identities = 17/48 (35%), Positives = 28/48 (57%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  E R K+  E+P L   +++K+LG  W      +K+P
Sbjct: 66  KRPMNAFIVWSRERRRKVALENPKLQNSEISKQLGYEWKRLTDAEKRP 113


>P51501 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 227
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 55  EKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKG 114
           + GK   +   D +  + + +T    KG  +      N  KRP +AF ++  + R K+  
Sbjct: 27  DSGKSSSVIWTDNSSSKDQWQTGENSKGSVQ------NRVKRPMNAFIVWSRDQRRKMAV 80

Query: 115 EHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           E+P +   +++K+LG  W      +K P
Sbjct: 81  ENPQMRNSEISKRLGYQWKLLTEAEKWP 108


 Score = 29.0 bits (63), Expect = 7.2
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 9   RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 68
           R K    AF V +  +  K    +  +  SE SK+   +WK ++  EK  F   A+  +A
Sbjct: 59  RVKRPMNAFIVWSRDQRRKMAVENPQMRNSEISKRLGYQWKLLTEAEKWPFFQEAQKLQA 118

Query: 69  RYEREMKTY 77
            +  +   Y
Sbjct: 119 MHREKYPNY 127


>O18896 TRANSCRIPTION FACTOR SOX-9.
           Length = 509
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 18/67 (26%), Positives = 33/67 (48%)

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K+    KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 87  TLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 146

Query: 136 AADDKQP 142
              +K+P
Sbjct: 147 NESEKRP 153


>P48436 TRANSCRIPTION FACTOR SOX-9.
           Length = 509
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 18/67 (26%), Positives = 33/67 (48%)

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K+    KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 87  TLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 146

Query: 136 AADDKQP 142
              +K+P
Sbjct: 147 NESEKRP 153


>P48434 TRANSCRIPTION FACTOR SOX-9.
           Length = 494
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 18/67 (26%), Positives = 33/67 (48%)

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K+    KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 88  TLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 147

Query: 136 AADDKQP 142
              +K+P
Sbjct: 148 NESEKRP 154


>P40645 TRANSCRIPTION FACTOR SOX-6.
           Length = 827
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 19/73 (26%), Positives = 32/73 (43%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++  + R KI    P +   +++K LG  W + +  +KQP            
Sbjct: 621 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIH 680

Query: 155 XXDIAAYRAKGKP 167
                 Y+ K +P
Sbjct: 681 LEKYPNYKYKPRP 693


 Score = 31.3 bits (69), Expect = 1.4
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 7   KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK-FEDMAKA 65
           +P  K    AF V    E  K       ++ S  SK    RWK+MS +EK   +E+ A+ 
Sbjct: 617 EPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARL 676

Query: 66  DKARYER 72
            K   E+
Sbjct: 677 SKIHLEK 683


>P53784 TRANSCRIPTION FACTOR SOX-3.
           Length = 375
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           G G   + R K    AF V +  +  K    +  ++ SE SK+    WK ++  EK  F 
Sbjct: 60  GGGGSDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFI 119

Query: 61  DMAKADKARYEREMKTY-IPPKGETKKKFK 89
           D AK  +A + +E   Y   P+ +TK   K
Sbjct: 120 DEAKRLRAVHMKEYPDYKYRPRRKTKTLLK 149


 Score = 34.0 bits (76), Expect = 0.21
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 90  DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           D +  KRP +AF ++    R K+  E+P +   +++K+LG  W      +K+P
Sbjct: 65  DQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRP 117


>P41225;P35714 TRANSCRIPTION FACTOR SOX-3.
           Length = 443
           
 Score = 37.5 bits (85), Expect = 0.019
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           G G   + R K    AF V +  +  K    +  ++ SE SK+    WK ++  EK  F 
Sbjct: 130 GGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFI 189

Query: 61  DMAKADKARYEREMKTY-IPPKGETKKKFK 89
           D AK  +A + +E   Y   P+ +TK   K
Sbjct: 190 DEAKRLRAVHMKEYPDYKYRPRRKTKTLLK 219


 Score = 34.0 bits (76), Expect = 0.21
 Identities = 16/53 (30%), Positives = 29/53 (54%)

Query: 90  DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           D +  KRP +AF ++    R K+  E+P +   +++K+LG  W      +K+P
Sbjct: 135 DQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGADWKLLTDAEKRP 187


>P48433 TRANSCRIPTION FACTOR SOX-3.
           Length = 312
           
 Score = 37.1 bits (84), Expect = 0.025
 Identities = 26/82 (31%), Positives = 38/82 (45%), Gaps = 1/82 (1%)

Query: 9   RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 68
           R K    AF V +  +  K    +  ++ SE SK+    WK +S  EK  F D AK  +A
Sbjct: 45  RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDAEKRPFIDEAKRLRA 104

Query: 69  RYEREMKTY-IPPKGETKKKFK 89
            + +E   Y   P+ +TK   K
Sbjct: 105 VHMKEYPDYKYRPRRKTKTLLK 126


 Score = 35.2 bits (79), Expect = 0.095
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 90  DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           D +  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  +K+P
Sbjct: 42  DQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDAEKRP 94


>P10840 MATING-TYPE M-SPECIFIC POLYPEPTIDE MC.
           Length = 181
           
 Score = 37.1 bits (84), Expect = 0.025
 Identities = 15/43 (34%), Positives = 25/43 (57%)

Query: 96  RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 138
           RPP+AF L+  E    +   +P ++   V+K +GEMW N + +
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKE 147


 Score = 29.0 bits (63), Expect = 7.2
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 18  FVQTCREEHK---KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM 74
           F+   +E+H    K +P  S+N S+ SK   E W+  S + + ++  M++  KA++++  
Sbjct: 110 FILYRKEKHATLLKSNP--SINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQKMY 167

Query: 75  K--TYIPPKGETKK 86
               Y P K + K+
Sbjct: 168 PGYKYQPRKNKVKR 181


>P40649 SOX-12 PROTEIN.
           Length = 470
           
 Score = 36.7 bits (83), Expect = 0.032
 Identities = 20/76 (26%), Positives = 32/76 (41%)

Query: 92  NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXX 151
           N  KRP +AF ++  + R KI    P +    ++K LG  W + +  +KQP         
Sbjct: 293 NHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNGEKQPYYEEQARLS 352

Query: 152 XXXXXDIAAYRAKGKP 167
                    Y+ K +P
Sbjct: 353 RQHLERYPDYKYKPRP 368


 Score = 28.6 bits (62), Expect = 9.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 16  AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK-FEDMAKADKARYER 72
           AF V    E  K       ++ S  SK    RWK+MS  EK   +E+ A+  +   ER
Sbjct: 301 AFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNGEKQPYYEEQARLSRQHLER 358


>Q00417 T-CELL-SPECIFIC TRANSCRIPTION FACTOR 1 (TCF-1) (T-CELL
           FACTOR 1)
           Length = 303
           
 Score = 36.4 bits (82), Expect = 0.042
 Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 3/77 (3%)

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 123
           K +   Y+R +KT   PK E  K+ K P   K+P +AF L+  E R K+  E        
Sbjct: 161 KQELQPYDRNLKTQAEPKAE--KEAKKP-VIKKPLNAFMLYMKEMRAKVIAECTLKESAA 217

Query: 124 VAKKLGEMWNNTAADDK 140
           + + LG  W+  + +++
Sbjct: 218 INQILGRRWHALSREEQ 234


>Q06945 TRANSCRIPTION FACTOR SOX-4.
           Length = 474
           
 Score = 36.4 bits (82), Expect = 0.042
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 14/128 (10%)

Query: 1   GKGDP----KKPRG--KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54
           GK D     K P G  K    AF V +  E  K       ++ +E SK+  +RWK +  K
Sbjct: 44  GKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL--K 101

Query: 55  EKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKG 114
           +  K   + +A++ R  + M  Y   K   +KK K  NA     +A     +  +P  KG
Sbjct: 102 DSDKIPFIREAERLRL-KHMADYPDYKYRPRKKVKSGNANSSSSAA-----ASSKPGEKG 155

Query: 115 EHPGLSIG 122
           +  G S G
Sbjct: 156 DKVGGSGG 163


 Score = 34.8 bits (78), Expect = 0.12
 Identities = 16/48 (33%), Positives = 26/48 (53%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG+ W      DK P
Sbjct: 60  KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIP 107


>P40637 SRY-RELATED PROTEIN AES1 (FRAGMENT).
           Length = 72
           
 Score = 35.6 bits (80), Expect = 0.073
 Identities = 16/48 (33%), Positives = 26/48 (53%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG+ W      DK P
Sbjct: 2   KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKGSDKIP 49


>P40634 SRY-RELATED PROTEIN ADW2 (FRAGMENT).
           Length = 72
           
 Score = 35.6 bits (80), Expect = 0.073
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++    R KI  + P +   +++K+LG  W      +K P            
Sbjct: 2   KRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVKGAERLRLKH 61

Query: 155 XXDIAAYR 162
             D A Y+
Sbjct: 62  MADYADYK 69


>Q61473;Q61472 TRANSCRIPTION FACTOR SOX-17.
           Length = 419
           
 Score = 35.2 bits (79), Expect = 0.095
 Identities = 15/59 (25%), Positives = 32/59 (53%)

Query: 84  TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           T  + K  +  +RP +AF ++  + R ++  ++P L   +++K LG+ W      +K+P
Sbjct: 58  TSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRP 116


>P36395 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 208
           
 Score = 35.2 bits (79), Expect = 0.095
 Identities = 23/82 (28%), Positives = 38/82 (46%)

Query: 9   RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 68
           R K    AF V +  +  K    +  ++ SE SK+    WK +S  EK  F D AK  + 
Sbjct: 34  RVKRPMNAFMVWSQTQRRKVALQNPKMHNSEISKQLGVTWKLLSDSEKRPFIDEAKRLRD 93

Query: 69  RYEREMKTYIPPKGETKKKFKD 90
           ++++       P+ +TK   K+
Sbjct: 94  KHKQVSDYKYQPRRKTKSFLKN 115


 Score = 34.4 bits (77), Expect = 0.16
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R K+  ++P +   +++K+LG  W   +  +K+P
Sbjct: 36  KRPMNAFMVWSQTQRRKVALQNPKMHNSEISKQLGVTWKLLSDSEKRP 83


>Q62563 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
          FACTOR).
          Length = 355
          
 Score = 34.8 bits (78), Expect = 0.12
 Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 5/76 (6%)

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
          +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 2  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 56

Query: 62 MAKADKARYEREMKTY 77
           A+  K  +  +   Y
Sbjct: 57 EAQRLKTLHREKYPNY 72


 Score = 34.0 bits (76), Expect = 0.21
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R K+  ++P +   +++K+LG  W +    +K+P
Sbjct: 6   KRPMNAFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRP 53


>Q62565 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
          FACTOR).
          Length = 311
          
 Score = 34.8 bits (78), Expect = 0.12
 Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 5/76 (6%)

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
          +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 2  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 56

Query: 62 MAKADKARYEREMKTY 77
           A+  K  +  +   Y
Sbjct: 57 EAQRLKTLHREKYPNY 72


 Score = 34.0 bits (76), Expect = 0.21
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R K+  ++P +   +++K+LG  W +    +K+P
Sbjct: 6   KRPMNAFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRP 53


>Q06831 TRANSCRIPTION FACTOR SOX-4.
           Length = 440
           
 Score = 34.8 bits (78), Expect = 0.12
 Identities = 16/48 (33%), Positives = 26/48 (53%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG+ W      DK P
Sbjct: 60  KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIP 107


 Score = 34.4 bits (77), Expect = 0.16
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 1   GKGDP----KKPRG--KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54
           GK D     K P G  K    AF V +  E  K       ++ +E SK+  +RWK +  K
Sbjct: 44  GKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL--K 101

Query: 55  EKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           +  K   + +A++ R  + M  Y   K   +KK K  NA
Sbjct: 102 DSDKIPFIQEAERLRL-KHMADYPDYKYRPRKKVKSGNA 139


>P40639 SRY-RELATED PROTEIN AES4 (FRAGMENT).
           Length = 72
           
 Score = 34.8 bits (78), Expect = 0.12
 Identities = 16/48 (33%), Positives = 26/48 (53%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG+ W      DK P
Sbjct: 2   KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIP 49


>Q12766 HYPOTHETICAL PROTEIN KIAA0194 (FRAGMENT).
           Length = 1435
           
 Score = 34.4 bits (77), Expect = 0.16
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 79  PPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PPK   KKK+K      K+P SA+ L+  +   K++ E P L   ++ KK+ E W
Sbjct: 171 PPK--KKKKYKIHGEKTKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESW 223


 Score = 31.3 bits (69), Expect = 1.4
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 6   KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKA 65
           KKPR     Y + +    ++     P + +N     KK SE W+ +S  E+  + + AK 
Sbjct: 186 KKPRSAYLLYYYDIYLKVQQELPHLPQSEIN-----KKISESWRLLSVAERSYYLEKAKL 240

Query: 66  DK 67
           +K
Sbjct: 241 EK 242


>Q05738 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
          FACTOR).
          Length = 395
          
 Score = 34.4 bits (77), Expect = 0.16
 Identities = 22/76 (28%), Positives = 35/76 (45%), Gaps = 5/76 (6%)

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
          +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 2  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 56

Query: 62 MAKADKARYEREMKTY 77
           A+  K  +  +   Y
Sbjct: 57 EAQRLKILHREKYPNY 72


 Score = 34.0 bits (76), Expect = 0.21
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R K+  ++P +   +++K+LG  W +    +K+P
Sbjct: 6   KRPMNAFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRP 53


>Q05066 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 204
           
 Score = 34.4 bits (77), Expect = 0.16
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  + R K+  E+P +   +++K+LG  W      +K P
Sbjct: 61  KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 108


>P48046 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 204
           
 Score = 34.4 bits (77), Expect = 0.16
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  + R K+  E+P +   +++K+LG  W      +K P
Sbjct: 61  KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWP 108


>P35710 TRANSCRIPTION FACTOR SOX-5.
           Length = 392
           
 Score = 34.4 bits (77), Expect = 0.16
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++  + R KI    P +   +++K LG  W      +KQP            
Sbjct: 186 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 245

Query: 155 XXDIAAYRAKGKP 167
                 Y+ K +P
Sbjct: 246 LEKYPDYKYKPRP 258


>P35711 TRANSCRIPTION FACTOR SOX-5.
           Length = 347
           
 Score = 34.4 bits (77), Expect = 0.16
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++  + R KI    P +   +++K LG  W      +KQP            
Sbjct: 141 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 200

Query: 155 XXDIAAYRAKGKP 167
                 Y+ K +P
Sbjct: 201 LEKYPDYKYKPRP 213


>O15370 SOX-22 PROTEIN.
           Length = 315
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 15/48 (31%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG  W      +K P
Sbjct: 41  KRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIP 88


 Score = 32.5 bits (72), Expect = 0.63
 Identities = 28/94 (29%), Positives = 41/94 (42%), Gaps = 5/94 (5%)

Query: 6   KKPRG--KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           K P G  K    AF V +  E  K       ++ +E SK+   RW+ +   EK  F  + 
Sbjct: 34  KTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPF--VR 91

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 97
           +A++ R  + M  Y   K   +KK K   A  RP
Sbjct: 92  EAERLRL-KHMADYPDYKYRPRKKSKGAPAKARP 124


>P43680 TRANSCRIPTION FACTOR SOX-18.
           Length = 377
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 15/61 (24%), Positives = 32/61 (51%)

Query: 82  GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           G  +++  D    +RP +AF ++  + R ++  ++P L    ++K LG+ W      +K+
Sbjct: 67  GRGERQTADELRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKR 126

Query: 142 P 142
           P
Sbjct: 127 P 127


>Q04889;O35178 TRANSCRIPTION FACTOR SOX-11.
           Length = 395
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++    R KI  + P +   +++K+LG+ W      +K P            
Sbjct: 50  KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAGRLRLKH 109

Query: 155 XXDIA--AYRAKGKP 167
             D     YR + KP
Sbjct: 110 MADYPDYKYRPRKKP 124


 Score = 30.5 bits (67), Expect = 2.4
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 16  AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75
           AF V +  E  K       ++ +E SK+  +RWK +   EK  F  + +A + R  + M 
Sbjct: 55  AFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPF--IREAGRLRL-KHMA 111

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSA 100
            Y   K   +KK K   A K  PSA
Sbjct: 112 DYPDYKYRPRKKPKTDPAAK--PSA 134


>P35716 TRANSCRIPTION FACTOR SOX-11.
           Length = 441
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++    R KI  + P +   +++K+LG+ W      +K P            
Sbjct: 50  KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 109

Query: 155 XXDIA--AYRAKGKP 167
             D     YR + KP
Sbjct: 110 MADYPDYKYRPRKKP 124


 Score = 32.1 bits (71), Expect = 0.83
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 16  AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75
           AF V +  E  K       ++ +E SK+  +RWK +   EK  F  + +A++ R  + M 
Sbjct: 55  AFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPF--IREAERLRL-KHMA 111

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSA 100
            Y   K   +KK      PK  PSA
Sbjct: 112 DYPDYKYRPRKK------PKMDPSA 130


>P48435 TRANSCRIPTION FACTOR SOX-11.
           Length = 396
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRP +AF ++    R KI  + P +   +++K+LG+ W      +K P            
Sbjct: 50  KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 109

Query: 155 XXDIA--AYRAKGKP 167
             D     YR + KP
Sbjct: 110 MADYPDYKYRPRKKP 124


 Score = 32.1 bits (71), Expect = 0.83
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 16  AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75
           AF V +  E  K       ++ +E SK+  +RWK +   EK  F  + +A++ R  + M 
Sbjct: 55  AFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPF--IREAERLRL-KHMA 111

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSA 100
            Y   K   +KK      PK  PSA
Sbjct: 112 DYPDYKYRPRKK------PKMDPSA 130


>P36393 SEX-DETERMINING REGION Y PROTEIN (TESTIS-DETERMINING
           FACTOR).
           Length = 208
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  + R K+  E+P +   +++K LG  W      +K+P
Sbjct: 63  KRPMNAFIVWSRDQRRKVALENPQMQNSEISKWLGCKWKMLTEAEKRP 110


>P40655 SRY-RELATED PROTEIN LG28 (FRAGMENT).
           Length = 71
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 15/48 (31%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG  W      +K P
Sbjct: 2   KRPMNAFMVWSQNERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIP 49


>P40638 SRY-RELATED PROTEIN AES2 (FRAGMENT).
           Length = 72
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 16/48 (33%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF +     R KI  + P +   +++K+LG+ W      DK P
Sbjct: 2   KRPMNAFMVGSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKGSDKIP 49


>P40636 SRY-RELATED PROTEIN ADW5 (FRAGMENT).
           Length = 72
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 15/48 (31%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG  W      +K P
Sbjct: 2   KRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIP 49


>P40635 SRY-RELATED PROTEIN ADW4 (FRAGMENT).
           Length = 72
           
 Score = 34.0 bits (76), Expect = 0.21
 Identities = 15/48 (31%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG  W      +K P
Sbjct: 2   KRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWELLQDSEKIP 49


>P40651 SRY-RELATED PROTEIN MG42 (FRAGMENT).
           Length = 72
           
 Score = 33.6 bits (75), Expect = 0.28
 Identities = 15/48 (31%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG  W      +K P
Sbjct: 2   KRPMNAFMVWSQNERRKIMDQWPDMHNAEISKRLGRPWQLLQDSEKIP 49


>P40654 SRY-RELATED PROTEIN LG27 (FRAGMENT).
           Length = 71
           
 Score = 33.6 bits (75), Expect = 0.28
 Identities = 14/48 (29%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++K+LG  W      ++ P
Sbjct: 2   KRPMNAFMVWSQNERRKIMDQWPDMHNAEISKRLGRRWQLLQDSERYP 49


>P35717 SOX-12 PROTEIN (FRAGMENT).
          Length = 59
          
 Score = 33.2 bits (74), Expect = 0.37
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 19 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 73
          V +  +  +  H +  ++ SE SK+   +WK +   EK  F + AK  +AR+ R+
Sbjct: 2  VWSSAQRRQMAHENPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRD 56


>P25042 ROX1 REPRESSOR (HYPOXIC FUNCTION REPRESSOR)
          (HEME-DEPENDENT REPRESSION
          Length = 368
          
 Score = 33.2 bits (74), Expect = 0.37
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 38 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY-IPPKGETKKK 87
          S  SK    +WK +  ++K  +E++A+ +K  +ER+   Y   P  ++KKK
Sbjct: 43 SNISKIIGTKWKGLQPEDKAHWENLAEKEKLEHERKYPEYKYKPVRKSKKK 93


>P40665 SRY-RELATED PROTEIN CH1 (FRAGMENT).
          Length = 54
          
 Score = 33.2 bits (74), Expect = 0.37
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 38 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 77
          SE SK+    WK +S  EK  F D AK  +A + +E   Y
Sbjct: 11 SEISKRLGAEWKQLSEAEKRPFIDEAKRHRAMHMKEYPDY 50


>Q08696 AXONEME-ASSOCIATED PROTEIN MST101(2).
           Length = 1391
           
 Score = 32.8 bits (73), Expect = 0.48
 Identities = 31/91 (34%), Positives = 41/91 (44%), Gaps = 3/91 (3%)

Query: 42  KKCSERWKTMSAKEKGKFEDMAKADKARYEREM--KTYIPPKGETKKKFKDPNAPKRPPS 99
           KKC E  K  +A EK K ++ AK +K   E++   KT    K E +KK  +  A KR  +
Sbjct: 765 KKCRELAKKKAA-EKKKCKEAAKKEKEAAEKKKCEKTAKKRKEEAEKKKCEKTAKKRKEA 823

Query: 100 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGE 130
           A    C +   K K E         AKK  E
Sbjct: 824 AEKKKCEKAAKKRKEEAEKKKCEKTAKKRKE 854


 Score = 30.5 bits (67), Expect = 2.4
 Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 9/128 (7%)

Query: 7   KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS-AKEKGKFEDMAKA 65
           K   K    A   + C +  KK+  +A        KKC +  K    A EK K E  AK 
Sbjct: 782 KEAAKKEKEAAEKKKCEKTAKKRKEEAE------KKKCEKTAKKRKEAAEKKKCEKAAKK 835

Query: 66  DKARYEREM--KTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 123
            K   E++   KT    K   +KK  +  A KR  +A    C +   K K         +
Sbjct: 836 RKEEAEKKKCEKTAKKRKETAEKKKCEKAAKKRKQAAEKKKCEKAAKKRKEAAEKKKCAE 895

Query: 124 VAKKLGEM 131
            AKK  E+
Sbjct: 896 AAKKEKEL 903


>Q02991 MATING-TYPE PROTEIN MAT-2.
           Length = 343
           
 Score = 32.8 bits (73), Expect = 0.48
 Identities = 12/47 (25%), Positives = 26/47 (54%)

Query: 96  RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           RP + + +F       +K E P L+I +++ +   +W+N + + K+P
Sbjct: 133 RPMNCWIIFRDAMHKHLKAEFPHLTIQEISTRCSHIWHNLSPEAKKP 179


>P40652 SRY-RELATED PROTEIN MG43 (FRAGMENT).
           Length = 72
           
 Score = 32.5 bits (72), Expect = 0.63
 Identities = 14/48 (29%), Positives = 25/48 (51%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++    R KI  + P +   +++++LG  W      +K P
Sbjct: 2   KRPMNAFMVWSQNERRKIMDQWPDMHNAEISERLGRRWQLLQDSEKIP 49


>P40670 SRY-RELATED PROTEIN CH31 (FRAGMENT).
          Length = 54
          
 Score = 32.5 bits (72), Expect = 0.63
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 38 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 77
          SE SK+    WK +S  EK  F D AK  +A + +E   Y
Sbjct: 11 SEISKRLGAEWKLLSEAEKRPFIDEAKRLRAMHMKEYPNY 50


>P40642 SRY-RELATED PROTEIN AMA2 (FRAGMENT).
          Length = 54
          
 Score = 32.5 bits (72), Expect = 0.63
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 38 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 77
          SE SK+    WK +S  EK  F D AK  +A + +E   Y
Sbjct: 11 SEISKRLGAEWKLLSEAEKRPFIDEAKRLRAMHMKEYPNY 50


>P40657 SOX-15 PROTEIN (FRAGMENT).
           Length = 54
           
 Score = 31.3 bits (69), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 109 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           R K+  E+P L   D++K LG+ W +    D++P
Sbjct: 5   RKKLADENPDLHNADLSKMLGKKWRSLTPQDRRP 38


>Q04892 SOX-14 PROTEIN (FRAGMENT).
          Length = 56
          
 Score = 31.3 bits (69), Expect = 1.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 24 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 73
          +  K    +  ++ SE SK+    WK +S  EK  + D AK  +A++ +E
Sbjct: 7  QRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKE 56


>Q00956 COAT PROTEIN.
           Length = 488
           
 Score = 31.3 bits (69), Expect = 1.4
 Identities = 28/79 (35%), Positives = 38/79 (47%), Gaps = 7/79 (8%)

Query: 14  SYAFFVQTCREEHKKKHPDASVN---FSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY 70
           S  F  + C+EE  K   D S N     +F+KKC    +  SA+   K     K  K RY
Sbjct: 311 SLGFERKICKEELSKIR-DLSKNEKKLKKFNKKCCSI-EEASAEYGCKKTSTKKYHKKRY 368

Query: 71  EREMKTYIPPKGETKKKFK 89
           +++ K Y P K   KKKF+
Sbjct: 369 KKKYKAYKPYK--KKKKFR 385


>P40640 SRY-RELATED PROTEIN AES6 (FRAGMENT).
           Length = 72
           
 Score = 31.3 bits (69), Expect = 1.4
 Identities = 14/48 (29%), Positives = 24/48 (49%)

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++      KI  + P +   +++K+ G+ W      DK P
Sbjct: 2   KRPMNAFMVWSQSRAGKIMEQSPDMHNAEISKRRGKRWKLLKDSDKIP 49


>P40656 SOX-14 PROTEIN (FRAGMENT).
           Length = 54
           
 Score = 30.9 bits (68), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 109 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           R KI    P L   +++K+LG  W   + DDKQP
Sbjct: 5   RRKICERTPDLHNAEISKELGRRWQLLSKDDKQP 38


>P35715 SOX-10 PROTEIN (FRAGMENT).
          Length = 54
          
 Score = 30.9 bits (68), Expect = 1.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 24 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 73
          +  K    +  ++ SE SK+    WK ++  EK  F D AK  +A + +E
Sbjct: 4  QRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKE 53


>Q09202 HYPOTHETICAL 25.9 KD PROTEIN AH6.3 IN CHROMOSOME II.
           Length = 230
           
 Score = 30.1 bits (66), Expect = 3.2
 Identities = 20/73 (27%), Positives = 36/73 (48%), Gaps = 4/73 (5%)

Query: 24  EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 83
           E+ KKK  +  V     S+   ER   ++ +EK   ++  + +K + + + KT    K +
Sbjct: 107 EKSKKKKTEEKV----MSEDKPERPDKLTEEEKPDAKEKKEIEKEKTKEKEKTKEKEKTQ 162

Query: 84  TKKKFKDPNAPKR 96
            K+K KD   PK+
Sbjct: 163 EKEKSKDETVPKQ 175


>P09208;Q24089;Q24023 INSULIN-LIKE RECEPTOR PRECURSOR (EC 2.7.1.112).
            Length = 2146
            
 Score = 30.1 bits (66), Expect = 3.2
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 15   YAFFVQTCREEHKKKHPDASVNFSEFSKK-CSERWKTMSAKEKGKFEDMAKADKARYERE 73
            YA FV  CREE     P   +  + F K  CS+        ++ KF D+    K   E  
Sbjct: 1158 YAIFVVACREE----IPSEKLRDTSFKKSLCSDYDTVFQTTKRKKFADIVMDLKVDLEHA 1213

Query: 74   MKTYIPPKGETKKKFKDPN 92
              T  P      +   DPN
Sbjct: 1214 NNTESPATFSLGRHQLDPN 1232


>Q11102 HYPOTHETICAL 131.5 KD PROTEIN C02F12.7 IN CHROMOSOME X.
           Length = 1130
           
 Score = 29.3 bits (64), Expect = 5.5
 Identities = 18/82 (21%), Positives = 42/82 (50%), Gaps = 6/82 (7%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCRE---EHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 58
           + +  +P G+ +     +QT  E   E++++  +    FSE+ ++ +ER + + A+  GK
Sbjct: 114 RNNSPQPAGRETELKRKIQTLEETVAEYERQKYNVMGTFSEYRERVAERERKLEAEYSGK 173

Query: 59  FEDMAK---ADKARYEREMKTY 77
              +++     K  +E  MK++
Sbjct: 174 IIALSEEVLGAKKDFEARMKSF 195


>P19375 HISTONE H1, EARLY EMBRYONIC.
           Length = 205
           
 Score = 29.0 bits (63), Expect = 7.2
 Identities = 32/107 (29%), Positives = 49/107 (44%), Gaps = 20/107 (18%)

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS----AKEKG 57
           KG   + +GK +S +F V             A    SE +KK  E+ K ++    AKEKG
Sbjct: 72  KGKLVQTKGKGASGSFKVNV---------QAAKAQASEKAKKEKEKAKLLAQREKAKEKG 122

Query: 58  KFEDMAKADKARYE------REMKTYIPPKGETKKKFKDP-NAPKRP 97
             E+   A+ +R +      ++ K  +    E K+K K P  APK+P
Sbjct: 123 CSEEGETAEGSRPKKVKAAPKKAKKPVKKTTEKKEKKKTPKKAPKKP 169


  Database: sprot.fas
    Posted date:  May 18, 1998 10:04 AM
  Number of letters in database: 26,335,942
  Number of sequences in database:  72,615
  
Lambda     K      H
   0.313    0.131    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9176623
Number of Sequences: 72615
Number of extensions: 370731
Number of successful extensions: 1257
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 291
length of query: 214
length of database: 26,335,942
effective HSP length: 50
effective length of query: 164
effective length of database: 22,705,192
effective search space: 3723651488
effective search space used: 3723651488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 62 (28.6 bits)
