BLASTN 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= U51677
         (2575 letters)

Database: embl.fas
           442,729 sequences; 675,252,082 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

U51677 Human non-histone chromatin protein HMG1 (HMG1) gene, co...  4129  0.0
L38477 Mus musculus (clone Clebp-1) high mobility group 1 prote...   353  7e-95
X80457 M.musculus HMG1 gene                                          353  7e-95


>U51677 Human non-histone chromatin protein HMG1 (HMG1) gene, complete
            cds.
            Length = 2575
            
 Score = 4129 bits (2083), Expect = 0.0
 Identities = 2167/2209 (98%)
 Strand = Plus / Plus

                                                                        
Query: 1    atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60

                                                                        
Query: 61   caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120

                                                                        
Query: 121  ttttctaagaagtgctcagagaggtggaaggtaagagggcttaaaacatgctaacaaggt 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ttttctaagaagtgctcagagaggtggaaggtaagagggcttaaaacatgctaacaaggt 180

                                                                        
Query: 181  aattaaaagacagtttccaattgaggatgcnnnnnnnngcctagttggcattctcgtagt 240
            ||||||||||||||||||||||||||||||        ||||||||||||||||||||||
Sbjct: 181  aattaaaagacagtttccaattgaggatgcaaaaaaaagcctagttggcattctcgtagt 240

                                                                        
Query: 241  gggacgctattacatagcaaaagacattggttttgaggataatttacttaaatgttacaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gggacgctattacatagcaaaagacattggttttgaggataatttacttaaatgttacaa 300

                                                                        
Query: 301  cttaaacttacaaattaattattttgtagaccatgtctgctaaagagaaaggaaaatttg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  cttaaacttacaaattaattattttgtagaccatgtctgctaaagagaaaggaaaatttg 360

                                                                        
Query: 361  aagatatggcaaaagcggacaaggcccgttatgaaagagaaatgaaaacctatatccctc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  aagatatggcaaaagcggacaaggcccgttatgaaagagaaatgaaaacctatatccctc 420

                                                                        
Query: 421  ccaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccgtgag 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  ccaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccgtgag 480

                                                                        
Query: 481  tatcttgcctgtttttacttcccagacacgttttacagtagaatctgagagaaatttagc 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tatcttgcctgtttttacttcccagacacgttttacagtagaatctgagagaaatttagc 540

                                                                        
Query: 541  aagctactttgtcagtttagagtgtaaatgtacaatcaaagtttcttagctaatacttgt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aagctactttgtcagtttagagtgtaaatgtacaatcaaagtttcttagctaatacttgt 600

                                                                        
Query: 601  tcatattggttatatttaaatagtataaaattcctgttgggtgggagtgttcccagagca 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tcatattggttatatttaaatagtataaaattcctgttgggtgggagtgttcccagagca 660

                                                                        
Query: 661  tttgaattagacatttggtctcctttgcccagtgtatctccttttgatctttttatttct 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tttgaattagacatttggtctcctttgcccagtgtatctccttttgatctttttatttct 720

                                                                        
Query: 721  tgaaaaatactatccctttgaaatagtgtaattgtagaatgttcatctagggttctagct 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tgaaaaatactatccctttgaaatagtgtaattgtagaatgttcatctagggttctagct 780

                                                                        
Query: 781  agtataaattaaatagttgtaaattaagctttggttgtgaaggatatttagtatattata 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  agtataaattaaatagttgtaaattaagctttggttgtgaaggatatttagtatattata 840

                                                                        
Query: 841  gtatttgcaccctgtccaatgcatcacagaaattcacaggcagctttaaatagcaatgca 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  gtatttgcaccctgtccaatgcatcacagaaattcacaggcagctttaaatagcaatgca 900

                                                                        
Query: 901  gtgtacacctgatagtatttgtttttgtgatctgttaacttaaaatcctaaaattaannn 960
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 901  gtgtacacctgatagtatttgtttttgtgatctgttaacttaaaatcctaaaattaattt 960

                                                                        
Query: 961  nnnnnnnagttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggaga 1020
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tttttttagttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggaga 1020

                                                                        
Query: 1021 acatcctggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacac 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 acatcctggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacac 1080

                                                                        
Query: 1081 tgctgcagatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacga 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tgctgcagatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacga 1140

                                                                        
Query: 1141 aaaggtaagaagtgtgggtttgcttggtaaaatgatgacaagtacgccagatgtatgatt 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aaaggtaagaagtgtgggtttgcttggtaaaatgatgacaagtacgccagatgtatgatt 1200

                                                                        
Query: 1201 gtacttagtttgaggtgtaataagtttttagggtaacagctacattaagtatggtgttga 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gtacttagtttgaggtgtaataagtttttagggtaacagctacattaagtatggtgttga 1260

                                                                        
Query: 1261 tataagtcctcatccttcaaagaatgcagaggaccaaataaattagggnnnnnnngacta 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||       |||||
Sbjct: 1261 tataagtcctcatccttcaaagaatgcagaggaccaaataaattagggtttttttgacta 1320

                                                                        
Query: 1321 aaatgtaatcagactcagacaaaggctgtgtacatttatgttggttttgttattccccag 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aaatgtaatcagactcagacaaaggctgtgtacatttatgttggttttgttattccccag 1380

                                                                        
Query: 1381 tatcttgaagttcatgaaaatgttggtagtcacttcaagtcaaaaatgagcattttcaaa 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tatcttgaagttcatgaaaatgttggtagtcacttcaagtcaaaaatgagcattttcaaa 1440

                                                                        
Query: 1441 tggcttggcatacagtacaaaaacaggctagacaaagtaatataggctatatttttctta 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tggcttggcatacagtacaaaaacaggctagacaaagtaatataggctatatttttctta 1500

                                                                        
Query: 1501 gtcatatcctgaaacatttatgttcttttcctttagatactcaaaaaaccacagcatcac 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 gtcatatcctgaaacatttatgttcttttcctttagatactcaaaaaaccacagcatcac 1560

                                                                        
Query: 1561 taagttaaattacaagtctgctgctctgtccagtaaattaataagattaaggaaatctat 1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 taagttaaattacaagtctgctgctctgtccagtaaattaataagattaaggaaatctat 1620

                                                                        
Query: 1621 aactcttatagttcagtaaattgaaatattaaatacttaattttcagctttagtcattct 1680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 aactcttatagttcagtaaattgaaatattaaatacttaattttcagctttagtcattct 1680

                                                                        
Query: 1681 gaaaagtgtttatttctagatgtttcttaacctaattgcatgtttattgacaaattaccn 1740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1681 gaaaagtgtttatttctagatgtttcttaacctaattgcatgtttattgacaaattacct 1740

                                                                        
Query: 1741 nnnnnnnnnaagaccacatttcctactaaggattaaggtctgacagtgtaaacctgtaga 1800
                     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 tttttttttaagaccacatttcctactaaggattaaggtctgacagtgtaaacctgtaga 1800

                                                                        
Query: 1801 gtgcttttttgcattcagaaggtggcagtgtctaccctttaatcaaagtctctacattct 1860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 gtgcttttttgcattcagaaggtggcagtgtctaccctttaatcaaagtctctacattct 1860

                                                                        
Query: 1861 ggttttaatagagttaggatctggtagataattgcacctcaatgaggcataactttgcaa 1920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 ggttttaatagagttaggatctggtagataattgcacctcaatgaggcataactttgcaa 1920

                                                                        
Query: 1921 atattagactatgccatttcatgagttatagattgttataatgatcttgtatttttatgt 1980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 atattagactatgccatttcatgagttatagattgttataatgatcttgtatttttatgt 1980

                                                                        
Query: 1981 tcatttattgaagttctagttatttctggagttgctgtggatctacagatacgtgatatt 2040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 tcatttattgaagttctagttatttctggagttgctgtggatctacagatacgtgatatt 2040

                                                                        
Query: 2041 ttggtataactagaatcttgatttctttcataaagttctgccatgttctatttctttcct 2100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 ttggtataactagaatcttgatttctttcataaagttctgccatgttctatttctttcct 2100

                                                                        
Query: 2101 taatcnnnnnnncttccctactgttttatcctccctttgctttggaaggatattgctgca 2160
            |||||       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 taatctttttttcttccctactgttttatcctccctttgctttggaaggatattgctgca 2160

                                                             
Query: 2161 tatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtcaagg 2209
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 tatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgtcaagg 2209


 Score =  361 bits (182), Expect = 3e-97
 Identities = 210/224 (93%)
 Strand = Plus / Plus

                                                                        
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
            |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 2411

                                                                        
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
            |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 2471

                                                                        
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531

                                                        
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575


>L38477 Mus musculus (clone Clebp-1) high mobility group 1 protein
            (HMG-1)
            Length = 1225
            
 Score =  353 bits (178), Expect = 7e-95
 Identities = 209/224 (93%)
 Strand = Plus / Plus

                                                                        
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
            |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 746  cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 805

                                                                        
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
            |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 806  gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 865

                                                                        
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 925

                                                        
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
            |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 926  aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 969


 Score =  234 bits (118), Expect = 5e-59
 Identities = 142/150 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 74  atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 133

                                                                       
Query: 61  caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
           |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 134 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 193

                                         
Query: 121 ttttctaagaagtgctcagagaggtggaag 150
           || || ||||||||||||||||||||||||
Sbjct: 194 ttctccaagaagtgctcagagaggtggaag 223


 Score =  214 bits (108), Expect = 4e-53
 Identities = 138/148 (93%)
 Strand = Plus / Plus

                                                                       
Query: 328 agaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggccc 387
           ||||||||||||||||||| || || |||||||||||||||||||| || |||||||| |
Sbjct: 222 agaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggctc 281

                                                                       
Query: 388 gttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttca 447
           ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 282 gttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttca 341

                                       
Query: 448 aggatcccaatgcacccaagaggcctcc 475
           |||| |||||||||||||||||||||||
Sbjct: 342 aggaccccaatgcacccaagaggcctcc 369


 Score =  186 bits (94), Expect = 1e-44
 Identities = 145/162 (89%)
 Strand = Plus / Plus

                                                                        
Query: 970  ttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcctgg 1029
            ||||||||||||| | ||||| |||||||| ||||| ||||||||||| || ||||||||
Sbjct: 370  ttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcctgg 429

                                                                        
Query: 1030 cctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcaga 1089
            | | ||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct: 430  cttatccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagcaga 489

                                                      
Query: 1090 tgacaagcagccttatgaaaagaaggctgcgaagctgaagga 1131
            |||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 490  tgacaagcagccctatgagaagaaagctgccaagctgaagga 531


 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2145 gaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggagttgt 2204
            ||||||||||||||| ||  ||||||||||||| ||||||||||| |||||||| || ||
Sbjct: 541  gaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaagggggtggt 600

                 
Query: 2205 caagg 2209
            |||||
Sbjct: 601  caagg 605


>X80457 M.musculus HMG1 gene
            Length = 2547
            
 Score =  353 bits (178), Expect = 7e-95
 Identities = 209/224 (93%)
 Strand = Plus / Plus

                                                                        
Query: 2352 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnntt 2411
            |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 2202 cttgtctataaagcatttaacccccctgtacacaactcactccttttaaagaaaaaaatt 2261

                                                                        
Query: 2412 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagtt 2471
            |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 2262 gaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtctttttttgtatagtt 2321

                                                                        
Query: 2472 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 aacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccact 2381

                                                        
Query: 2532 aaccttgcctggtacagtatgggggttgtaaattggcatggaaa 2575
            |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2382 aaccttgcctggtacagtctgggggttgtaaattggcatggaaa 2425


 Score =  266 bits (134), Expect = 1e-68
 Identities = 155/162 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 173 atgggcaaaggagatcctaagaagccgagaggcaaaatgtcctcatatgcattctttgtg 232

                                                                       
Query: 61  caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag 120
           |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 233 caaacttgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag 292

                                                     
Query: 121 ttttctaagaagtgctcagagaggtggaaggtaagagggctt 162
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttttccaagaagtgctcagagaggtggaaggtaagagggctt 334


 Score =  232 bits (117), Expect = 2e-58
 Identities = 147/157 (93%)
 Strand = Plus / Plus

                                                                       
Query: 327 tagaccatgtctgctaaagagaaaggaaaatttgaagatatggcaaaagcggacaaggcc 386
           |||||||||||||||||||| || || |||||||||||||||||||| || |||||||| 
Sbjct: 467 tagaccatgtctgctaaagaaaaggggaaatttgaagatatggcaaaggctgacaaggct 526

                                                                       
Query: 387 cgttatgaaagagaaatgaaaacctatatccctcccaaaggggagacaaaaaagaagttc 446
           |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 527 cgttatgaaagagaaatgaaaacctacatcccccccaaaggggagaccaaaaagaagttc 586

                                                
Query: 447 aaggatcccaatgcacccaagaggcctccgtgagtat 483
           ||||| |||||||||||||||||||||||||||||||
Sbjct: 587 aaggaccccaatgcacccaagaggcctccgtgagtat 623


 Score =  194 bits (98), Expect = 4e-47
 Identities = 161/182 (88%)
 Strand = Plus / Plus

                                                                        
Query: 968  agttcggccttcttcctcttctgctctgagtatcgcccaaaaatcaaaggagaacatcct 1027
            ||||||||||||||| | ||||| |||||||| ||||| ||||||||||| || ||||||
Sbjct: 1007 agttcggccttcttcttgttctgttctgagtaccgccccaaaatcaaaggcgagcatcct 1066

                                                                        
Query: 1028 ggcctgtccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgca 1087
            ||| | ||||||||||||||||| |||||||| |||||||||||||| |||||||| |||
Sbjct: 1067 ggcttatccattggtgatgttgcaaagaaactaggagagatgtggaacaacactgcagca 1126

                                                                        
Query: 1088 gatgacaagcagccttatgaaaagaaggctgcgaagctgaaggaaaaatacgaaaaggta 1147
            |||||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||
Sbjct: 1127 gatgacaagcagccctatgagaagaaagctgccaagctgaaggagaagtatgagaaggta 1186

              
Query: 1148 ag 1149
            ||
Sbjct: 1187 ag 1188


 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2141 tttggaaggatattgctgcatatcgagctaaaggaaagcctgatgcagcaaaaaagggag 2200
            ||||||||||||||||||| ||  ||||||||||||| ||||||||||| |||||||| |
Sbjct: 1992 tttggaaggatattgctgcctacagagctaaaggaaaacctgatgcagcgaaaaaggggg 2051

                     
Query: 2201 ttgtcaagg 2209
            | |||||||
Sbjct: 2052 tggtcaagg 2060


 Score = 56.0 bits (28), Expect = 2e-05
 Identities = 73/87 (83%), Gaps = 2/87 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1869 tagagttaggatctggtagataattgcacctcaatgaggcataactttgcaaatattaga 1928
            |||| ||||||| ||||| |||||||||| ||| |||||||||||    |||||||||| 
Sbjct: 1777 tagaattaggatgtggtatataattgcacttcagtgaggcataacaacacaaatattag- 1835

                                       
Query: 1929 ctatgccatttcatgagttatagattg 1955
             | || ||||||||||||| |||||||
Sbjct: 1836 -tctgacatttcatgagttgtagattg 1861


 Score = 46.1 bits (23), Expect = 0.023
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 1791 aacctgtagagtgcttttttgcattcagaaggtggcagt 1829
            |||||||||| |||| |||||  ||||||||||||||||
Sbjct: 1699 aacctgtagaatgctgttttgtgttcagaaggtggcagt 1737




  Database: embl.fas
    Posted date:  May 15, 1998  5:37 PM
  Number of letters in database: 675,252,082
  Number of sequences in database:  442,729
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1123218
Number of Sequences: 442729
Number of extensions: 1123218
Number of successful extensions: 86816
Number of sequences better than 10.0: 106
length of query: 2575
length of database: 675,252,082
effective HSP length: 21
effective length of query: 2554
effective length of database: 665,954,773
effective search space: 1700848490242
effective search space used: 1700848490242
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
