Uses of Interface org.biojava.bio.dp.ModelTrainer (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojava.bio.dp.ModelTrainer

Packages that use ModelTrainer
org.biojava.bio.dist | Probability distributions over Alphabets.
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.

Uses of ModelTrainer in org.biojava.bio.dist

Methods in org.biojava.bio.dist with parameters of type ModelTrainer
`void` | `PairDistribution.registerWithTrainer(ModelTrainer trainer)` Register this paired distribution with a model trainer.

Uses of ModelTrainer in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement ModelTrainer
`class` | `SimpleModelTrainer`

Methods in org.biojava.bio.dp with parameters of type ModelTrainer
`void` | `WMAsMM.registerWithTrainer(ModelTrainer modelTrainer)`
`void` | `SimpleEmissionState.registerWithTrainer(ModelTrainer trainer)`
`void` | `Trainable.registerWithTrainer(ModelTrainer mt)` Perform any registration that is necessary with mt.
`protected abstract double` | `AbstractTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)`
`protected double` | `BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)`
`protected double` | `BaumWelchTrainer.singleSequenceIteration(ModelTrainer trainer, SymbolList symList)`
`protected double` | `BaumWelchSampler.singleSequenceIteration(ModelTrainer trainer, SymbolList symList, ScoreType scoreType)`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES