Uses of Class org.biojava.bio.seq.db.biosql.DBHelper (BioJava-1.5-beta API)

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## Uses of Class
org.biojava.bio.seq.db.biosql.DBHelper

Packages that use DBHelper
org.biojava.bio.seq.db.biosql | General purpose Sequence storage in a relational database.

Uses of DBHelper in org.biojava.bio.seq.db.biosql

Subclasses of DBHelper in org.biojava.bio.seq.db.biosql
`class` | `HypersonicDBHelper` Deprecated. Use hibernate and org.biojavax.bio.db.*
`class` | `MySQLDBHelper` Deprecated. Use hibernate and org.biojavax.bio.db.*
`class` | `OracleDBHelper` Deprecated. Use hibernate and org.biojavax.bio.db.*
`class` | `PostgreSQLDBHelper`
`class` | `UnknownDBHelper` Deprecated. Use hibernate and org.biojavax.bio.db.*

Methods in org.biojava.bio.seq.db.biosql that return DBHelper
`static DBHelper` | `DBHelper.getDBHelper(Connection conn)` Deprecated. Returns a DBHelper implementation suitable for a particular database.

Methods in org.biojava.bio.seq.db.biosql with parameters of type DBHelper
`static void` | `TaxonSQL.automaticUpdate(Connection conn, DBHelper helper, TaxonFactory factory, File delnodes, File merged)` Deprecated. This method tries to perform a complete update according to the given `TaxonFactory`, which already contains the newes taxa and the files available at the NCBI-FTP-Site.
`static int` | `TaxonSQL.putTaxon(Connection conn, DBHelper helper, Taxon taxon)` Deprecated. Adds a `Taxon` (along with its parents) to the database.
`static void` | `TaxonSQL.removeGeneticCodeID(Connection conn, DBHelper helper, Taxon tdb)` Deprecated. Deletes the genetic code annotation from the taxon in the database.
`static void` | `TaxonSQL.removeLeftValue(Connection conn, DBHelper helper, Taxon tdb)` Deprecated. Deletes the left value from the specified taxon in the database.
`static void` | `TaxonSQL.removeMitochondrialGeneticCodeID(Connection conn, DBHelper helper, Taxon tdb)` Deprecated. Deletes the so called mitochondrial genetic code annotation from the given taxon.
`static Taxon` | `TaxonSQL.removeName(Connection conn, DBHelper helper, Taxon taxon, String nameClass, String oldName)` Deprecated. Deletes the specified name from of the taxon from the database.
`static void` | `TaxonSQL.removeRank(Connection conn, DBHelper helper, Taxon tdb)` Deprecated. Removes the rank persistently from the taxon in the database.
`static void` | `TaxonSQL.removeRightValue(Connection conn, DBHelper helper, Taxon tdb)` Deprecated. Deletes the right value from the specified taxon in the database.
`static Taxon` | `TaxonSQL.removeTaxon(Connection conn, DBHelper helper, String name)` Deprecated. Deletes a taxon specified by one of it's names with all it's different names, annotations and sequences from the database.
`static Taxon` | `TaxonSQL.removeTaxon(Connection conn, int ncbi_id, DBHelper helper)` Deprecated. Deletes the taxon given by it's NCBI-Taxon-ID from the database and returns the removed taxon.

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