Uses of Class org.biojava.utils.stax.StAXContentHandlerBase (BioJava-1.5-beta API)

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## Uses of Class
org.biojava.utils.stax.StAXContentHandlerBase

Packages that use StAXContentHandlerBase
org.biojava.bio.program.sax.blastxml | Parsers for the XML output from NCBI blast.
org.biojava.bio.program.ssbind | Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.program.xff | Event-driven parsing system for the Extensible Feature Format (XFF).
org.biojava.bio.seq.io.filterxml | Tools for reading and writing an XML representation of BioJava's FeatureFilter language.
org.biojava.bio.seq.io.game | Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
org.biojava.bio.seq.io.game12 | Event-driven parsing system for the Gene Annotation Markup Elements (GAME).
org.biojava.utils.stax | The Stack API for XML (StAX).

Uses of StAXContentHandlerBase in org.biojava.bio.program.sax.blastxml

Subclasses of StAXContentHandlerBase in org.biojava.bio.program.sax.blastxml
`class` | `BlastXMLParser` This class parses NCBI Blast XML output.

Uses of StAXContentHandlerBase in org.biojava.bio.program.ssbind

Subclasses of StAXContentHandlerBase in org.biojava.bio.program.ssbind
`class` | `AlignmentStAXHandler` `AlignmentStAXHandler` handles the BlastLikeAlignment element of BioJava BlastLike XML.
`class` | `HeaderStAXHandler` `HeaderStAXHandler` handles the Header element of BioJava BlastLike XML.
`class` | `HitStAXHandler` `AlignmentStAXHandler` handles the Hit element of BioJava BlastLike XML.
`class` | `HSPStAXHandler` `HSPStAXHandler` handles the HSP element of BioJava BlastLike XML.
`class` | `HSPSummaryStAXHandler` `HSPSummaryStAXHandler` handles the HSPSummary element of BioJava BlastLike XML.
`class` | `SeqSimilarityStAXAdapter` `SeqSimilarityStAXAdapter` is a handler for XML conforming to the BioJava BlastLike DTD.
`class` | `SeqSimilarityStAXHandler` `SeqSimilarityStAXHandler` is a base class for creating modular StAX handlers which send callbacks to a `SeqSimilarityStAXAdapter`.

Uses of StAXContentHandlerBase in org.biojava.bio.program.xff

Subclasses of StAXContentHandlerBase in org.biojava.bio.program.xff
`class` | `FeatureHandler` StAX handler for the basic `feature` type of XFF.
`class` | `LocationHandlerBase` Handler to the XFF location type.
`class` | `PropDetailHandler` StAX handler for xff:prop detail elements.
`class` | `StrandedFeatureHandler` StAX handler for XFF strandedFeature type.
`class` | `XFFFeatureSetHandler` StAX handler which converts and stream of parse events for an XFF featureSet element into BioJava SeqIO events.

Methods in org.biojava.bio.program.xff that return StAXContentHandlerBase
`StAXContentHandlerBase` | `XFFFeatureSetHandler.getDetailsHandler()` Return a handler for the XFF `details` element.

Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.filterxml

Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.filterxml
`class` | `XMLAnnotationTypeHandler` StAX handler for parsing AnnotationTypes in FilterXML documents.

Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.game

Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.game
`class` | `GAMEAnnotationHandler` Handles the GAME <annotation> element
`class` | `GAMEAspectPropHandler` Handles the GAME <aspect> element
`class` | `GAMEDbxrefPropHandler` Deals with database crossreferences
`class` | `GAMEDescriptionPropHandler` StAX handler for GAME <description> elements.
`class` | `GAMEFeatureSetHandler` Handles the <feature_set> element
`class` | `GAMEFeatureSetPropHandler` Handles the GAME element
`class` | `GAMEFeatureSpanHandler` Handles the <feature_span> element
`class` | `GAMEGenePropHandler` Handles the GAME <gene> element
`class` | `GAMEHandler` Handles the root GAME element
`class` | `GAMEMapPosPropHandler` Handles the GAME <map_position> element Currently, it just ignores it!
`class` | `GAMENamePropHandler` StAX handler for the GAME <name> element.
`class` | `GAMEResiduesPropHandler` StAX handler for GAME <residues> elements.
`class` | `GAMESeqPropHandler` Handles the GAME <seq> element
`class` | `GAMESeqRelPropHandler` Handles the GAME <aspect> element
`class` | `GAMESpanPropHandler` Handles the GAME <span> element Currently, it just ignores it!
`class` | `GAMETypePropHandler` StAX handler for GAME <type> elements.
`class` | `SequenceContentHandlerBase` StAX handler for elements containing sequence
`class` | `StAXFeatureHandler` StAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.
`class` | `StAXPropertyHandler` StAX handler shamelessly ripped off from Thomas Down's XFFFeatureSetHandler.

Uses of StAXContentHandlerBase in org.biojava.bio.seq.io.game12

Subclasses of StAXContentHandlerBase in org.biojava.bio.seq.io.game12
`class` | `GAMEAspectHandler` Handles the GAME <aspect> element
`class` | `GAMEDbxrefHandler` Handles the GAME <dbxref> element
`class` | `GAMEFeatureSpanHandler.SeqRelHandler`
`class` | `GAMEGeneHandler` Handles the GAME <annotation> element
`class` | `GAMEPropertyHandler` Handles the GAME <dbxref> element
`class` | `GAMESeqHandler` Handles the GAME <seq> element
`class` | `GAMESeqRelHandler` Handles the GAME <> element
`class` | `GAMESpanHandler` Handles the GAME <> element.

Uses of StAXContentHandlerBase in org.biojava.utils.stax

Subclasses of StAXContentHandlerBase in org.biojava.utils.stax
`class` | `BooleanElementHandlerBase` StAX handler for any element which just contains a string representation of an boolean.
`class` | `ByteElementHandlerBase` StAX handler for any element which just contains a string representation of a byte.
`class` | `CharElementHandlerBase` StAX handler for any element which just contains a string representation of a char.
`class` | `DoubleElementHandlerBase` StAX handler for any element which just contains a string representation of a double.
`class` | `FloatElementHandlerBase` StAX handler for any element which just contains a string representation of a float.
`class` | `IntElementHandlerBase` StAX handler for any element which just contains a string representation of an integer.
`class` | `LongElementHandlerBase` StAX handler for any element which just contains a string representation of a long.
`class` | `StringElementHandlerBase` StAX handler for any element which just contains a string.

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