Uses of Interface org.biojava.bio.search.SeqSimilaritySearchResult (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojava.bio.search.SeqSimilaritySearchResult

Packages that use SeqSimilaritySearchResult
org.biojava.bio.program.ssbind | Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.search | Interfaces and classes for representing sequence similarity search results.

Uses of SeqSimilaritySearchResult in org.biojava.bio.program.ssbind

Methods in org.biojava.bio.program.ssbind that return SeqSimilaritySearchResult
`SeqSimilaritySearchResult` | `BlastLikeSearchBuilder.makeSearchResult()`

Uses of SeqSimilaritySearchResult in org.biojava.bio.search

Classes in org.biojava.bio.search that implement SeqSimilaritySearchResult
`class` | `SequenceDBSearchResult` Deprecated. SimpleSeqSimilaritySearchResult has been made Annotatable and is now functionally identical.
`class` | `SimpleSeqSimilaritySearchResult` `SimpleSeqSimilaritySearchResult` objects represent a result of a search of a `SymbolList` against the sequences within a `SequenceDB` object.

Methods in org.biojava.bio.search that return SeqSimilaritySearchResult
`SeqSimilaritySearchResult` | `SearchBuilder.makeSearchResult()` The `makeSearchResult` method returns a `SeqSimilaritySearchResult` instance created from accumulated data.
`SeqSimilaritySearchResult` | `SeqSimilaritySearcher.search(SymbolList querySeq, SequenceDB db, Map searchParameters)` Using this sequence similarity searcher, search with the given sequence against the given sequence database.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES