BLASTX 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= U51677
         (2575 letters)

Database: sprot.fas
           72,615 sequences; 26,335,942 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

P12682 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     111  4e-24
P07155;P27109;P27428 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (...   111  4e-24
P09429 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     111  4e-24
P10103 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                     111  4e-24
P26583 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     107  8e-23
P52925 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     107  8e-23
P17741 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     107  8e-23
P30681 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     107  8e-23
P07156 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (FRAGMENT).          107  1e-22
P26584 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).                     104  5e-22
P07746 HIGH MOBILITY GROUP-T PROTEIN (HMG-T).                         98  5e-20
P40618 HIGH MOBILITY GROUP PROTEIN HMG2A (HMG-2A).                    98  7e-20
P36194 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).                      91  7e-18
P40673 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2) (FRAGMENT).           83  3e-15
P40644 HIGH MOBILITY GROUP PROTEIN 1 HOMOLOG.                         69  2e-11
Q09390 HYPOTHETICAL 23.8 KD PROTEIN F47D12.4 IN CHROMOSOME III.       63  2e-09
Q08945 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    42  0.005
Q04931 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    42  0.005
Q08943 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    42  0.005
P41848 PROBABLE STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)      41  0.007
Q04678 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1) (RECOMB...    41  0.007
P11632 NONHISTONE CHROMOSOMAL PROTEIN 6A.                             39  0.035
P40620 HMG1/2-LIKE PROTEIN.                                           39  0.035
P40622 MOBILITY GROUP PROTEIN 1A.                                     36  0.23
P11633 NONHISTONE CHROMOSOMAL PROTEIN 6B.                             36  0.30
Q05344 SINGLE-STRAND RECOGNITION PROTEIN (SSRP) (CHORION-FACTOR...    36  0.39
P40623 MOBILITY GROUP PROTEIN 1B.                                     35  0.51
P40621 HMG1/2-LIKE PROTEIN.                                           34  0.88
P25977;P25978 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDIN...    34  1.2
P17480 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTO...    34  1.2
P25976 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTO...    34  1.2
Q05153 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 HOMOLOG (HMG PR...    34  1.2
P27347 DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN).                 33  2.0
P40619 HMG1/2-LIKE PROTEIN.                                           33  2.6
P40627 HIGH-MOBILITY-GROUP PROTEIN C (FRAGMENT).                      33  2.6
P11873 NONHISTONE CHROMOSOMAL PROTEIN LG-1.                           33  2.6
P40625 HIGH-MOBILITY-GROUP PROTEIN (NONHISTONE CHROMOSOMAL PROT...    32  4.5
Q05783 HIGH MOBILITY GROUP PROTEIN D (HMG-D).                         32  5.8
Q06943 HIGH MOBILITY GROUP PROTEIN Z (HMG-Z).                         32  5.8
P26585 HMG1/2-LIKE PROTEIN (SB11 PROTEIN).                            31  7.7
Q24247 POSITION-SPECIFIC ANTIGEN 1, ALPHA CHAIN PRECURSOR (ALPH...    31  7.7
P40657 SOX-15 PROTEIN (FRAGMENT).                                     31  7.7

>P12682 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 214
           
 Score =  111 bits (276), Expect = 4e-24
 Identities = 50/54 (92%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK    K
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54


 Score =  107 bits (264), Expect = 1e-22
 Identities = 51/55 (92%), Positives = 51/55 (92%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP    LF
Sbjct: 50  TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLF 104


 Score = 79.2 bits (192), Expect = 3e-14
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK P
Sbjct: 107  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKHP 142


>P07155;P27109;P27428 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
           (AMPHOTERIN) (HEPARIN-BINDING
           Length = 214
           
 Score =  111 bits (276), Expect = 4e-24
 Identities = 50/54 (92%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK    K
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54


 Score =  107 bits (264), Expect = 1e-22
 Identities = 51/55 (92%), Positives = 51/55 (92%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP    LF
Sbjct: 50  TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLF 104


 Score = 81.1 bits (197), Expect = 7e-15
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP
Sbjct: 107  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142


>P09429 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 214
           
 Score =  111 bits (276), Expect = 4e-24
 Identities = 50/54 (92%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK    K
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54


 Score =  107 bits (264), Expect = 1e-22
 Identities = 51/55 (92%), Positives = 51/55 (92%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP    LF
Sbjct: 50  TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLF 104


 Score = 81.1 bits (197), Expect = 7e-15
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP
Sbjct: 107  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142


>P10103 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 214
           
 Score =  111 bits (276), Expect = 4e-24
 Identities = 50/54 (92%), Positives = 50/54 (92%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK    K
Sbjct: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54


 Score =  107 bits (264), Expect = 1e-22
 Identities = 51/55 (92%), Positives = 51/55 (92%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP    LF
Sbjct: 50  TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLF 104


 Score = 81.1 bits (197), Expect = 7e-15
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP
Sbjct: 107  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142


>P26583 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 208
           
 Score =  107 bits (265), Expect = 8e-23
 Identities = 47/54 (87%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWK    K
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAK 54


 Score = 90.5 bits (221), Expect = 1e-17
 Identities = 42/55 (76%), Positives = 46/55 (83%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEK KFEDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPP    LF
Sbjct: 50  TMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLF 104


 Score = 64.8 bits (155), Expect = 6e-10
 Identities = 28/36 (77%), Positives = 31/36 (85%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E+RPKIK EHPGLSIGD AKKLGEMW+  +A DKQP
Sbjct: 107  EHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQP 142


 Score = 31.3 bits (69), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (46%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           K DP  P+   S++  F    R + K +HP  S+   + +KK  E W  +  K
Sbjct: 88  KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAK 138


>P52925 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 209
           
 Score =  107 bits (265), Expect = 8e-23
 Identities = 47/54 (87%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWK    K
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAK 54


 Score = 89.3 bits (218), Expect = 3e-17
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEK KFED+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPP    LF
Sbjct: 50  TMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLF 104


 Score = 64.8 bits (155), Expect = 6e-10
 Identities = 28/36 (77%), Positives = 31/36 (85%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E+RPKIK EHPGLSIGD AKKLGEMW+  +A DKQP
Sbjct: 107  EHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQP 142


 Score = 31.3 bits (69), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (46%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           K DP  P+   S++  F    R + K +HP  S+   + +KK  E W  +  K
Sbjct: 88  KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAK 138


>P17741 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 209
           
 Score =  107 bits (265), Expect = 8e-23
 Identities = 47/54 (87%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWK    K
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAK 54


 Score = 90.5 bits (221), Expect = 1e-17
 Identities = 42/55 (76%), Positives = 46/55 (83%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEK KFEDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPP    LF
Sbjct: 50  TMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLF 104


 Score = 64.8 bits (155), Expect = 6e-10
 Identities = 28/36 (77%), Positives = 31/36 (85%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E+RPKIK EHPGLSIGD AKKLGEMW+  +A DKQP
Sbjct: 107  EHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQP 142


 Score = 31.3 bits (69), Expect = 7.7
 Identities = 16/53 (30%), Positives = 25/53 (46%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           K DP  P+   S++  F    R + K +HP  S+   + +KK  E W  +  K
Sbjct: 88  KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSI--GDTAKKLGEMWSEQSAK 138


>P30681 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 209
           
 Score =  107 bits (265), Expect = 8e-23
 Identities = 47/54 (87%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWK    K
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAK 54


 Score = 89.3 bits (218), Expect = 3e-17
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEK KFED+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPP    LF
Sbjct: 50  TMSAKEKSKFEDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLF 104


 Score = 61.7 bits (147), Expect = 5e-09
 Identities = 28/36 (77%), Positives = 30/36 (82%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E RPKIK EHPGLSIGD AKKLGEMW+  +A DKQP
Sbjct: 107  ENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQP 142


>P07156 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) (FRAGMENT).
           Length = 180
           
 Score =  107 bits (264), Expect = 1e-22
 Identities = 51/55 (92%), Positives = 51/55 (92%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP    LF
Sbjct: 16  TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLF 70


 Score = 81.1 bits (197), Expect = 7e-15
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP
Sbjct: 73   EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 108


 Score = 38.3 bits (87), Expect = 0.059
 Identities = 16/20 (80%), Positives = 16/20 (80%)
 Frame = +1

Query: 106 VNFSEFSKKCSERWKVRGLK 165
           VNFSEFSKKCSERWK    K
Sbjct: 1   VNFSEFSKKCSERWKTMSAK 20


>P26584 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2).
           Length = 206
           
 Score =  104 bits (258), Expect = 5e-22
 Identities = 45/54 (83%), Positives = 49/54 (90%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           GKGDP KPRGKMSSYA+FVQTCREEHKKKHPD+SVNF+EFS+KCSERWK    K
Sbjct: 1   GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSK 54


 Score = 90.9 bits (222), Expect = 9e-18
 Identities = 42/55 (76%), Positives = 46/55 (83%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMS+KEKGKFE+MAK DKARY+REMK Y+PPKGE K K KDPNAPKRPP    LF
Sbjct: 50  TMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLF 104


 Score = 62.8 bits (150), Expect = 2e-09
 Identities = 27/36 (75%), Positives = 30/36 (83%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E+RPKIK +HPGLSIGD AKKLGEMW+   A DKQP
Sbjct: 107  EHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQP 142


>P07746 HIGH MOBILITY GROUP-T PROTEIN (HMG-T).
           Length = 204
           
 Score = 98.3 bits (241), Expect = 5e-20
 Identities = 46/55 (83%), Positives = 49/55 (88%)
 Frame = +1

Query: 1   MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           MGK DP+KPRGKMSSYA+FVQT REEHKKKHP+ASVNFSEFSKKCSERWK    K
Sbjct: 1   MGK-DPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAK 54


 Score = 92.8 bits (227), Expect = 2e-18
 Identities = 41/48 (85%), Positives = 45/48 (93%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 473
           TMSAKEKGKFED+AK DK RYEREM++YIPPKGE KK+FKDPNAPKRP
Sbjct: 50  TMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRP 97


 Score = 62.1 bits (148), Expect = 4e-09
 Identities = 26/36 (72%), Positives = 31/36 (85%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            ++RP++KGE PGLSIGDVAKKLGE WNN  A+DK P
Sbjct: 107  DFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVP 142


>P40618 HIGH MOBILITY GROUP PROTEIN HMG2A (HMG-2A).
           Length = 201
           
 Score = 97.9 bits (240), Expect = 7e-20
 Identities = 42/53 (79%), Positives = 47/53 (88%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWK    K
Sbjct: 2   KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSK 54


 Score = 75.3 bits (182), Expect = 4e-13
 Identities = 38/55 (69%), Positives = 42/55 (76%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494
           TMS+KEK KF++MAKADK RY+REMK Y P KG  KK  KDPNAPKRPP    LF
Sbjct: 50  TMSSKEKAKFDEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSAFFLF 102


 Score = 61.3 bits (146), Expect = 7e-09
 Identities = 26/36 (72%), Positives = 31/36 (85%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E+RPKIK  +PG+SIGDVAKKLGEMWNN +  +KQP
Sbjct: 105  EFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQP 140


>P36194 HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1).
           Length = 200
           
 Score = 91.3 bits (223), Expect = 7e-18
 Identities = 41/53 (77%), Positives = 46/53 (86%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           KGDPKKP+GKMS+YAFFVQTCREEH KK+P+  VNF+EFSKKCSERWK    K
Sbjct: 2   KGDPKKPKGKMSAYAFFVQTCREEH-KKNPEVPVNFAEFSKKCSERWKTMSSK 53


 Score = 74.5 bits (180), Expect = 7e-13
 Identities = 36/49 (73%), Positives = 40/49 (81%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 476
           TMS+KEK KF++MAKADK RY+REMK Y P KG  KK  KDPNAPKRPP
Sbjct: 49  TMSSKEKAKFDEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPP 95


 Score = 61.3 bits (146), Expect = 7e-09
 Identities = 26/36 (72%), Positives = 31/36 (85%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E+RPKIK  +PG+SIGDVAKKLGEMWNN +  +KQP
Sbjct: 104  EFRPKIKSTNPGISIGDVAKKLGEMWNNLSDGEKQP 139


>P40673 HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2) (FRAGMENT).
           Length = 38
           
 Score = 82.7 bits (201), Expect = 3e-15
 Identities = 36/38 (94%), Positives = 37/38 (96%)
 Frame = +1

Query: 4   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFS 117
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPDASVNF+
Sbjct: 1   GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDASVNFA 38


>P40644 HIGH MOBILITY GROUP PROTEIN 1 HOMOLOG.
           Length = 200
           
 Score = 69.5 bits (167), Expect = 2e-11
 Identities = 32/50 (64%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
 Frame = +1

Query: 1   MGKGD--PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           MGK D    KPRG+MS+YA+FVQ  R EH K HP++ V F+EFSK CS RWK
Sbjct: 1   MGKKDRDSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWK 52


 Score = 52.7 bits (124), Expect = 3e-06
 Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
 Frame = +3

Query: 333 MSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKK---KFKDPNAPKR 470
           +  K KG F + +  DK RY+REM++Y PPKGE  K   + KDP+APKR
Sbjct: 54  LEEKGKGVFHEKSMRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKR 102


 Score = 36.0 bits (81), Expect = 0.30
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E R  IK  HP  S+GD+AK+L   W    A +K P
Sbjct: 113  ENRAAIKSVHPNWSVGDIAKELAVRWRAMTAGEKIP 148


>Q09390 HYPOTHETICAL 23.8 KD PROTEIN F47D12.4 IN CHROMOSOME III.
           Length = 202
           
 Score = 63.2 bits (151), Expect = 2e-09
 Identities = 29/46 (63%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
 Frame = +1

Query: 13  DPKKP--RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           D  KP  RGK S Y FFV+ C EEHKKK+P+ +V  +E SKKCSE+WK
Sbjct: 8   DMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWK 55


 Score = 36.0 bits (81), Expect = 0.30
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK--FKDPNAPKR 470
           TM   EK +F ++A+ D  RY+ E+  Y       K+K   KDP+APKR
Sbjct: 56  TMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAMRKRKRAKKDPHAPKR 104


 Score = 33.6 bits (75), Expect = 1.5
 Identities = 13/32 (40%), Positives = 20/32 (61%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 1096
            RP+I+  HP   +G VA++LG+MW     + K
Sbjct: 117  RPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 148


 Score = 31.3 bits (69), Expect = 7.7
 Identities = 15/49 (30%), Positives = 27/49 (54%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKV 153
           K DP  P+  +S++ F+ Q  R E +  HPD  V   + +++  + WK+
Sbjct: 96  KKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKV--GQVAQELGKMWKL 142


>Q08945 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
            (RECOMBINATION SIGNAL
            Length = 709
            
 Score = 41.8 bits (96), Expect = 0.005
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 1099
            R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 562  REKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 594


 Score = 39.1 bits (89), Expect = 0.035
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWK 586


>Q04931 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
            (RECOMBINATION SIGNAL
            Length = 561
            
 Score = 41.8 bits (96), Expect = 0.005
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 1099
            R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 414  REKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 446


 Score = 39.1 bits (89), Expect = 0.035
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK
Sbjct: 395 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWK 438


 Score = 31.7 bits (70), Expect = 5.8
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 336 SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 473
           S +E+ K + + +A  A+  +  K     K    KK KDPNAPKRP
Sbjct: 362 SDREEKKRKQLKRAKMAKDRKSRK-----KSSEGKKGKDPNAPKRP 402


>Q08943 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
            (RECOMBINATION SIGNAL
            Length = 708
            
 Score = 41.8 bits (96), Expect = 0.005
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 1099
            R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 562  REKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 594


 Score = 39.1 bits (89), Expect = 0.035
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWK 586


 Score = 32.5 bits (72), Expect = 3.4
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 336 SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 473
           S +E+ K E + +A  A+  +  +     K    KK KDPNAPKRP
Sbjct: 510 SDREEKKREQLKRAKMAKDRKSRR-----KSSEAKKGKDPNAPKRP 550


>P41848 PROBABLE STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
           Length = 697
           
 Score = 41.4 bits (95), Expect = 0.007
 Identities = 22/46 (47%), Positives = 32/46 (68%), Gaps = 10/46 (21%)
 Frame = +3

Query: 330 TMSAKEKGKFEDMAKADKARYEREMKTY----------IPPKGETKKKFKDPNAPK 467
           TMS+ +K K+E+ A+ DK+RYE+EMK Y           P   +T KK   P++ K
Sbjct: 594 TMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSK 649


>Q04678 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
            (RECOMBINATION SIGNAL
            Length = 669
            
 Score = 41.4 bits (95), Expect = 0.007
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 1099
            R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 523  REKIKSDHPGISITDLSKKAGELWKAMSKEKKE 555


 Score = 38.3 bits (87), Expect = 0.059
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK
Sbjct: 504 DPNVPKRPMSAYMLWLNANREKIKSDHPGISI--TDLSKKAGELWK 547


>P11632 NONHISTONE CHROMOSOMAL PROTEIN 6A.
           Length = 93
           
 Score = 39.1 bits (89), Expect = 0.035
 Identities = 17/48 (35%), Positives = 27/48 (55%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           K DP  P+  +S+Y FF    R+  + ++PD  + F +  KK  E+WK
Sbjct: 15  KKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWK 60


 Score = 37.9 bits (86), Expect = 0.078
 Identities = 15/36 (41%), Positives = 22/36 (60%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E R  ++ E+P ++ G V KKLGE W     ++KQP
Sbjct: 34   ENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQP 69


>P40620 HMG1/2-LIKE PROTEIN.
           Length = 149
           
 Score = 39.1 bits (89), Expect = 0.035
 Identities = 17/46 (36%), Positives = 27/46 (57%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP KP+   S++  F+   RE++KK HP+ + + +   K C E WK
Sbjct: 41  DPNKPKRPPSAFFVFMADFREQYKKDHPN-NKSVAAVGKACGEEWK 85


>P40622 MOBILITY GROUP PROTEIN 1A.
           Length = 114
           
 Score = 36.4 bits (82), Expect = 0.23
 Identities = 19/49 (38%), Positives = 31/49 (62%)
 Frame = +1

Query: 19  KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           +KP+  +S+Y  ++ + RE  KK++PD  V  +E +KK  E W  RG+K
Sbjct: 3   EKPKRPLSAYMLWLNSARESIKKENPDFKV--TEIAKKGGELW--RGMK 47


>P11633 NONHISTONE CHROMOSOMAL PROTEIN 6B.
           Length = 99
           
 Score = 36.0 bits (81), Expect = 0.30
 Identities = 17/48 (35%), Positives = 26/48 (53%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           K DP  P+  +S+Y FF    R+  + ++PD  V F +  +   ERWK
Sbjct: 21  KKDPNAPKRGLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWK 66


 Score = 35.2 bits (79), Expect = 0.51
 Identities = 14/36 (38%), Positives = 22/36 (60%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            E R  ++ E+P ++ G V + LGE W    A++KQP
Sbjct: 40   ENRDIVRSENPDVTFGQVGRILGERWKALTAEEKQP 75


>Q05344 SINGLE-STRAND RECOGNITION PROTEIN (SSRP) (CHORION-FACTOR 5).
           Length = 723
           
 Score = 35.6 bits (80), Expect = 0.39
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 10/43 (23%)
 Frame = +3

Query: 342 KEKGKFEDMAKADKARYEREMKTYIPPKG----------ETKKKFKDPNAPKR 470
           K+K K+ED A  DK RY  EM+ Y P  G           +KK+  +P+  K+
Sbjct: 597 KDKSKWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKK 649


 Score = 33.2 bits (74), Expect = 2.0
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 9/33 (27%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEM---------WNNTAADDKQ 1099
            R   K E+PG+ + ++AKK GEM         W + AA DKQ
Sbjct: 570  RESYKRENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQ 611


>P40623 MOBILITY GROUP PROTEIN 1B.
           Length = 110
           
 Score = 35.2 bits (79), Expect = 0.51
 Identities = 19/48 (39%), Positives = 30/48 (61%)
 Frame = +1

Query: 22  KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           KP+  +S+Y  ++ + RE  K+++PD  V  +E +KK  E W  RGLK
Sbjct: 4   KPKRPLSAYMLWLNSARESIKRENPDFKV--TEVAKKGGELW--RGLK 47


>P40621 HMG1/2-LIKE PROTEIN.
           Length = 161
           
 Score = 34.4 bits (77), Expect = 0.88
 Identities = 17/46 (36%), Positives = 26/46 (55%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP KP+   S++  F+   REE K+K+P  + + +   K   ERWK
Sbjct: 38  DPNKPKRAPSAFFVFMGEFREEFKQKNP-KNKSVAAVGKAAGERWK 82


>P25977;P25978 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING
           FACTOR 1) (UBF-1).
           Length = 764
           
 Score = 34.0 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
 Frame = +3

Query: 333 MSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP 476
           M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP
Sbjct: 522 MEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPP 571


>P17480 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR 1)
           (UBF-1)
           Length = 764
           
 Score = 34.0 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
 Frame = +3

Query: 333 MSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP 476
           M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP
Sbjct: 522 MEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPP 571


>P25976 NUCLEOLAR TRANSCRIPTION FACTOR 1 (UPSTREAM BINDING FACTOR 1)
           (UBF-1).
           Length = 765
           
 Score = 34.0 bits (76), Expect = 1.2
 Identities = 20/48 (41%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
 Frame = +3

Query: 333 MSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP 476
           M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP
Sbjct: 522 MEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPP 571


>Q05153 STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1 HOMOLOG (HMG
           PROTEIN).
           Length = 644
           
 Score = 34.0 bits (76), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (51%)
 Frame = +1

Query: 7   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSER 144
           K DP  P+  MS + FF Q  R+  KK+HP   + F E  K   ++
Sbjct: 556 KKDPNAPKRAMSGFMFFSQMERDNIKKEHP--GIAFGEVGKVLGDK 599


>P27347 DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN).
           Length = 157
           
 Score = 33.2 bits (74), Expect = 2.0
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP KP+   S++  F++  R+E K+K+P  + + +   K   +RWK
Sbjct: 37  DPNKPKRAPSAFFVFMEEFRKEFKEKNP-KNKSVAAVGKAAGDRWK 81


 Score = 32.1 bits (71), Expect = 4.5
 Identities = 21/53 (39%), Positives = 24/53 (44%)
 Frame = +3

Query: 339 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLFL 497
           AK KG     AKAD     +      P KG   K  KDPN PKR P    +F+
Sbjct: 4   AKSKGA----AKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFM 52


>P40619 HMG1/2-LIKE PROTEIN.
           Length = 144
           
 Score = 32.8 bits (73), Expect = 2.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 13  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           DP KP+   S++  F++  R+ +K+KHP+ + + +   K   ++WK
Sbjct: 32  DPNKPKRPPSAFFVFMEDFRKTYKEKHPN-NKSVAVVGKAGGDKWK 76


 Score = 31.3 bits (69), Expect = 7.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 429 ETKKKFKDPNAPKRPP*VSCLFL 497
           +TKK  KDPN PKRPP    +F+
Sbjct: 25  KTKKAVKDPNKPKRPPSAFFVFM 47


>P40627 HIGH-MOBILITY-GROUP PROTEIN C (FRAGMENT).
           Length = 92
           
 Score = 32.8 bits (73), Expect = 2.6
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 16  PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           P  P+  +S++  F Q   E+ KK++P+A +  +E +   +E+WK  G K
Sbjct: 1   PAPPKRPLSAFFLFKQHNYEQVKKENPNAKI--TELTSMIAEKWKAVGEK 48


>P11873 NONHISTONE CHROMOSOMAL PROTEIN LG-1.
           Length = 100
           
 Score = 32.8 bits (73), Expect = 2.6
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 16  PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165
           P  P+  +S++  F Q   E+ KK++P+A +  +E +   +E+WK  G K
Sbjct: 9   PAPPKRPLSAFFLFKQHNYEQVKKENPNAKI--TELTSMIAEKWKAVGEK 56


 Score = 32.1 bits (71), Expect = 4.5
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 342 KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFK 449
           KEK K+E +    KA+YE++M+ Y    G+ +K+ K
Sbjct: 56  KEKKKYETLQSEAKAKYEKDMQAYEKKYGKPEKQKK 91


>P40625 HIGH-MOBILITY-GROUP PROTEIN (NONHISTONE CHROMOSOMAL
           PROTEIN).
           Length = 99
           
 Score = 32.1 bits (71), Expect = 4.5
 Identities = 15/45 (33%), Positives = 27/45 (59%)
 Frame = +3

Query: 333 MSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPK 467
           ++ KEK K+E + +  KA+YE++M+ Y    G+ +K  K   + K
Sbjct: 52  VTEKEKKKYEGLQQEAKAKYEKDMQAYEKKYGKPEKVKKIKKSKK 96


>Q05783 HIGH MOBILITY GROUP PROTEIN D (HMG-D).
            Length = 112
            
 Score = 31.7 bits (70), Expect = 5.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMW 1072
            R  IK E+PG+ + +VAK+ GE+W
Sbjct: 20   RESIKRENPGIKVTEVAKRGGELW 43


>Q06943 HIGH MOBILITY GROUP PROTEIN Z (HMG-Z).
            Length = 111
            
 Score = 31.7 bits (70), Expect = 5.8
 Identities = 12/26 (46%), Positives = 19/26 (72%)
 Frame = +2

Query: 995  EYRPKIKGEHPGLSIGDVAKKLGEMW 1072
            E R +IK ++PG  + D+AK+ GE+W
Sbjct: 19   ETREQIKKDNPGSKVTDIAKRGGELW 44


>P26585 HMG1/2-LIKE PROTEIN (SB11 PROTEIN).
           Length = 152
           
 Score = 31.3 bits (69), Expect = 7.7
 Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 4/49 (8%)
 Frame = +1

Query: 4   GKG----DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 150
           GKG    DP KP+   S++  F++  R+   K+HP+     S   K    +WK
Sbjct: 33  GKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKA-VSAVGKAAGAKWK 84


>Q24247 POSITION-SPECIFIC ANTIGEN 1, ALPHA CHAIN PRECURSOR (ALPHA-PS1)
            Length = 1146
            
 Score = 31.3 bits (69), Expect = 7.7
 Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 4/68 (5%)
 Frame = -3

Query: 1181 LSSFYQANPHFLP----FRIFPSASQPSFHKAACHLQQCYSTSLPVSSQHHQWTGQDVLL 1014
            L+S  + NP +L      R+FPS S+ SF+K+  H Q+ Y +S       H+    D   
Sbjct: 899  LASGSRENPAYLSAPAQMRMFPSQSRHSFNKSLIHSQRSYYSS------SHRDDHSD--- 949

Query: 1013 *FLGDTQSRRGR 978
                DTQS R R
Sbjct: 950  ----DTQSNRNR 957


>P40657 SOX-15 PROTEIN (FRAGMENT).
            Length = 54
            
 Score = 31.3 bits (69), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 1001 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102
            R K+  E+P L   D++K LG+ W +    D++P
Sbjct: 5    RKKLADENPDLHNADLSKMLGKKWRSLTPQDRRP 38


  Database: sprot.fas
    Posted date:  May 18, 1998 10:04 AM
  Number of letters in database: 26,335,942
  Number of sequences in database:  72,615
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108852599
Number of Sequences: 72615
Number of extensions: 2170537
Number of successful extensions: 4765
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4609
Number of HSP's gapped (non-prelim): 160
length of query: 858
length of database: 26,335,942
effective HSP length: 53
effective length of query: 804
effective length of database: 22,487,347
effective search space: 18079826988
effective search space used: 18079826988
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 68 (30.9 bits)
