Uses of Class org.biojava.bio.program.gff.IgnoreRecordException (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
org.biojava.bio.program.gff.IgnoreRecordException

Packages that use IgnoreRecordException
org.biojava.bio.program.gff | GFF manipulation.
org.biojava.bio.program.gff3 | Support for reading and writing GFF3.

Uses of IgnoreRecordException in org.biojava.bio.program.gff

Methods in org.biojava.bio.program.gff that throw IgnoreRecordException
`protected GFFRecord` | `GFFParser.createRecord(GFFDocumentHandler handler, List aList, String rest, String comment)` Actually turns a list of tokens, some value string and a comment into a GFFRecord and informs handler.
`int` | `GFFErrorHandler.invalidEnd(String token)` The `end' field of the GFF entry was not a valid value.
`int` | `GFFErrorHandler.SkipRecordErrorHandler.invalidEnd(String token)`
`int` | `GFFErrorHandler.invalidFrame(String token)` The `frame' field of the GFF entry was not a valid value.
`int` | `GFFErrorHandler.SkipRecordErrorHandler.invalidFrame(String token)`
`double` | `GFFErrorHandler.invalidScore(String token)` The `score' field of the GFF entry was not a valid value.
`double` | `GFFErrorHandler.SkipRecordErrorHandler.invalidScore(String token)`
`int` | `GFFErrorHandler.invalidStart(String token)` The `start' field of the GFF entry was not a valid value.
`int` | `GFFErrorHandler.SkipRecordErrorHandler.invalidStart(String token)`
`StrandedFeature.Strand` | `GFFErrorHandler.invalidStrand(String token)` The `strand' field of the GFF entry was not a valid value.
`StrandedFeature.Strand` | `GFFErrorHandler.SkipRecordErrorHandler.invalidStrand(String token)`

Uses of IgnoreRecordException in org.biojava.bio.program.gff3

Methods in org.biojava.bio.program.gff3 that throw IgnoreRecordException
`protected GFF3Record` | `GFF3Parser.createRecord(GFF3DocumentHandler handler, List aList, String rest, String comment, Ontology ontology, Ontology fallBack)` Actually turns a list of tokens, some value string and a comment into a GFF3Record and informs handler.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES