Uses of Interface org.biojava.bio.program.homologene.SimilarityType (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojava.bio.program.homologene.SimilarityType

Packages that use SimilarityType
org.biojava.bio.program.homologene | Support classes for Homologene data.

Uses of SimilarityType in org.biojava.bio.program.homologene

Classes in org.biojava.bio.program.homologene that implement SimilarityType
`static class` | `SimilarityType.PlaceHolder`

Fields in org.biojava.bio.program.homologene declared as SimilarityType
`static SimilarityType` | `SimilarityType.CURATED`
`static SimilarityType` | `SimilarityType.MULTIPLE`
`static SimilarityType` | `SimilarityType.TWIN`

Methods in org.biojava.bio.program.homologene that return SimilarityType
`SimilarityType` | `OrthoPair.getSimilarity()` gets the second orthologue in the orthology relationship.
`SimilarityType` | `SimpleOrthoPair.getSimilarity()`

Methods in org.biojava.bio.program.homologene with parameters of type SimilarityType
`OrthoPair` | `SimpleHomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)`
`OrthoPair` | `HomologeneDB.createOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)` Create a computed orthology entry.

Constructors in org.biojava.bio.program.homologene with parameters of type SimilarityType
`OrthoPairFilter.BySimilarityType(SimilarityType type)`
`SimpleOrthoPair(Orthologue first, Orthologue second, SimilarityType type, double percentIdentity)` constructor for the computed form of an orthology relationship.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES