org.biojava.bio.program.abi (BioJava-1.5-beta API)
Keywords: org.biojava.bio.program.abi package

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## Package org.biojava.bio.program.abi

ABI Trace Handling.

See:
Description

Interface Summary
ABIFParser.DataAccess | Concatenation of the `Seekable` and `DataInput` interfaces.

Class Summary
ABIFChromatogram | An implementation of `Chromatogram` to encapulsulate chromatogram data extracted from the files produced by ABI sequencers, such as the the 377 and the 3700.
ABIFParser | A general base parser for files produced by ABI software.
ABIFParser.TaggedDataRecord | An aggregate immutable type for an ABIF tagged data record.
ABITools | Useful functionality for working with fasta files where the quality of the DNA is encoded as upper and lower case DNA characters.
ABITrace | Title: ABITrace ABITrace is a class for managing ABI file information, it is capable of opening an ABI file and storing the most important fields, which can be recalled as simple java types.

## Package org.biojava.bio.program.abi Description

ABI Trace Handling.

The ABI trace file format is a proprietary file format that has achieved the status orf a de facto standard given the dominance of the company in sequencing technology.

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