TBLASTN 2.0.11 [Jan-20-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1) -
Homo sapiens (Human).
         (214 letters)

Database: embl.fas
           442,729 sequences; 675,252,082 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Y00463 Rat mRNA for high mobility group protein HMG1                 326  2e-88
Z11997 M.musculus mRNA for non-histone chromosomal high-mobilit...   326  2e-88
M63852 Rat high mobility group 1 protein synthetic gene, comple...   326  2e-88
M64986 Rat amphoterin mRNA, complete cds.                            326  2e-88
L38477 Mus musculus (clone Clebp-1) high mobility group 1 prote...   326  2e-88
U00431 Mus musculus HMG-1 mRNA, complete cds.                        326  2e-88
X12796 Bovine mRNA for high mobility group 1 (HMG1) protein          326  2e-88
X12597 Human mRNA for high mobility group-1 protein (HMG-1).         326  2e-88
M21683;M21684 Pig nonhistone protein HMG1 mRNA, complete cds.        324  9e-88
D63874 Human mRNA for HMG-1, complete cds.                           322  3e-87
L08048 Human non-histone chromosomal protein (HMG-1) retropseud...   319  2e-86
Z95115 Human DNA sequence from BAC 445C9 on chromosome 22q12.1.      303  2e-81
U21933 Xenopus laevis high mobility group protein-1 (HMG-1) mRN...   297  1e-79
X62534 H.sapiens HMG-2 mRNA                                          284  1e-75
J02895 Pig non-histone chromosomal protein (HMG2) mRNA, complet...   283  1e-75
D84418 Rat mRNA for chromosomal protein HMG2, complete cds.          282  2e-75
Z46757 M.musculus mRNA for high mobility group 2 protein.            279  2e-74
M83235 Gallus gallus non-histone chromosomal protein (HMG2) mRN...   279  3e-74
M80574 Gallus domesticus high-mobility group-2 protein (HMG-2) ...   275  4e-73
D30765 Xenopus laevis mRNA for HMG-X protein, complete cds.          273  2e-72
X02666 Trout mRNA for high mobility group protein HMG-T              266  2e-70
U31513 Ambystoma mexicanum high mobility group protein-2 (HMG-2...   261  9e-69
X98857 L.fluviatilis mRNA for HMG protein                            257  1e-67
Y00365 Chinese hamster HMG-1 gene for high mobility group prote...   252  3e-66
X63463 G.gallus HMG2a mRNA                                           251  8e-66
AF022465 Mus musculus high mobility group protein homolog HMG4 ...   250  1e-65
X67668 M.musculus mRNA for high mobility group 2 protein             250  2e-65
Y10043 Homo sapiens mRNA for high mobility group protein HMG2a       245  6e-64
D14314 Chicken mRNA for HMG-1, complete cds.                         243  2e-63
Z17240 Homo sapiens for mRNA encoding HMG2B.                         235  4e-61
X80457 M.musculus HMG1 gene                                          189  3e-47
U13881 Drosophila melanogaster DNA-binding protein (DSP1) mRNA,...   183  1e-45
X81456 D.melanogaster mRNA for an open reading frame                 183  1e-45
L06453 Strongylocentrotus purpuratus (clone C) high mobility gr...   165  6e-40
D14718 Human chromosomal protein HMG1 related gene.                  162  3e-39
AF009343 Mus musculus HMG-like protein (Trf) mRNA, complete cds.     155  7e-38
M83665 Human high mobility group 2 protein (HMG-2) gene, comple...   107  2e-35
X89811 D.melanogaster DNA for SSRP2 gene                              82  4e-33
X80466 M.musculus HMG1-R-227 gene                                    133  3e-30
X80462 M.musculus HMG1-R-154 gene                                    123  2e-27
U51677 Human non-histone chromatin protein HMG1 (HMG1) gene, co...   111  7e-24
Z93931 Human DNA sequence from PAC 438G17 on chromosome 6q22. C...   109  5e-23
L32859 Rainbow trout HMG-1 gene exons 2-5, complete cds.             100  2e-20
AC002526 Human PAC clone DJ0558L21 from Xq23, complete sequence.      99  7e-20
AF003626 Homo sapiens cosmids IM0525, LC1233, Qc3C1, LB1439, Qc...    97  2e-19
L32954 Rainbow trout HMG-T2 gene exons 1-4, complete cds.             92  7e-18
X80465 M.musculus HMG1-R-168 gene                                     90  3e-17
X80467 M.musculus HMG1-R-87 gene                                      59  7e-17
X80461 M.musculus HMG1-R-145 gene                                     54  1e-16
X80460 M.musculus HMG1-R-135 gene                                     58  6e-16
U22831 Caenorhabditis elegans cosmid F47D12.                          83  4e-15
U00049 Caenorhabditis elegans cosmid C18F10.                          83  4e-15
X80459 M.musculus HMG1-R-177 gene                                     51  9e-14
S50213 HMG1-related DNA-binding protein [mice, mRNA, 2569 nt].        75  8e-13
M26110 Bovine high-mobility-group protein (HMG-1) mRNA, 3' end.       75  1e-12
L08814 Rat CIIDBP (homologous to human SSRP-1 and mouse T160 ge...    75  1e-12
U84139 Bos taurus structure-specific recognition protein 1 (SSR...    74  2e-12
I66608 Sequence 6 from patent US 5670621.                             73  4e-12
M86737 Human high mobility group box (SSRP1) mRNA, complete cds.      73  4e-12
I66610 Sequence 9 from patent US 5670621.                             73  4e-12
I66609 Sequence 8 from patent US 5670621.                             73  4e-12
D14315 delta-crystallin enhancer binding protein, partial seque...    70  3e-11
M74017 T.brucei rhodesiense HMG1-like protein mRNA, complete cds.     69  7e-11
X97906 V.faba mRNA for transcription factor containing HMG-box        68  1e-10
M95912 Saccharomyces cerevisiae N-acetyltransferase (MAK) compl...    68  1e-10
Z71255 S.cerevisiae chromosome XVI 165536 bp sequence, cen righ...    68  1e-10
Z49219;U00094 S.cerevisiae chromosome XVI cosmid 9499.                68  1e-10
X15317 Yeast NHP6A gene for nonhistone protein                        68  1e-10
X58282 Maize mRNA for a high mobility group protein                   68  1e-10
X66077 Z.mays MNB1b mRNA for DNA-binding protein                      68  1e-10
L08815 Chicken CIIDBP (homologous to human SSRP-1 and mouse T16...    67  2e-10
X80464 M.musculus HMG1-R-161 gene                                     67  3e-10
U01348 Rattus norvegicus clone B-0/7 arylamine N-acetyltransfer...    66  4e-10
U01343 Rattus norvegicus clone A-1 arylamine N-acetyltransferas...    66  4e-10
AB000637 Canavalia gladiata mRNA for HMG-1, complete cds.             66  5e-10
X15318 Yeast NHPB gene for nonhistone protein                         65  1e-09
U01345 Rattus norvegicus clone A-3 arylamine N-acetyltransferas...    65  1e-09
Z35959;Y13134 S.cerevisiae chromosome II reading frame ORF YBR090c    65  1e-09
Z21703 V.faba mRNA for HMG box.                                       64  2e-09
L12169 Japanese morning glory high mobility group protein mRNA ...    63  3e-09
Z29356 Gallus domesticus of h71t7 gene encoding G.domesticus ex...    62  1e-08
Z11540 T.aestivum mRNA for high mobility group protein (HMGW)         62  1e-08
U39747 Ipomoea nil high mobility group protein 2 HMG2 mRNA, com...    62  1e-08
U80736 Homo sapiens CAGF9 mRNA, partial cds.                          61  2e-08
AJ002391 Solanum tuberosum mRNA for high mobility group protein       61  2e-08
AF002226 Nicotiana tabacum DNA-binding protein (T231) mRNA, com...    61  2e-08
Z50799 H.vulgare mRNA for HMG1/2-like protein.                        61  2e-08
L31630 Plasmodium falciparum (clone: D10) high mobility group p...    60  3e-08
M73753 Saccharomyces cerevisiae mitochondrial protein gene, com...    59  5e-08
Z48952;Z71257 S.cerevisiae chromosome XIII cosmid 9916.               59  5e-08
Y08298 Z.mays mRNA for HMGc2 protein                                  59  5e-08
AJ223169 Saccharomyces cerevisiae mRNA for cisplatin-damaged DN...    59  5e-08
Y14072 Arabidopsis thaliana mRNA for HMG beta1 protein                59  6e-08
Y14073 Arabidopsis thaliana mRNA for HMG beta2 protein                59  6e-08
Y09482 A.thaliana mRNA for HMG 1 protein                              59  6e-08
Y14071 Arabidopsis thaliana mRNA for HMG alpha protein                58  1e-07
Y08807 Z.mays mRNA for HMG protein                                    58  1e-07
X80463 M.musculus HMG1-R-159 gene                                     58  1e-07
I66612 Sequence 12 from patent US 5670621.                            58  1e-07
I66611 Sequence 10 from patent US 5670621.                            58  1e-07
X68408 D.melanogaster SSRP1 mRNA                                      58  1e-07
Z28032;Y13137 S.cerevisiae chromosome XI reading frame ORF YKL032c    58  1e-07
L16900 Yeast intrastrand crosslink recognition protein (Ixr1) g...    58  1e-07
X71622 S.cerevisiae DNA sequence for Kazal serine protease inhi...    58  1e-07
Y14074 Arabidopsis thaliana mRNA for HMG gamma protein                57  2e-07
X78993 S.cerevisiae genomic DNA 70kb region of the right arm of...    57  3e-07
Y08297 Z.mays mRNA for HMGc1 protein                                  56  4e-07
D13491 A.thaliana mRNA for high mobility group protein, complet...    56  4e-07
X58245 Soybean mRNA for HMG-1 like protein                            56  4e-07
L08825 Drosophila melanogaster single-stranded recognition prot...    56  6e-07
L22300 Chilo iridescent virus type 6 zinc finger protein and no...    55  7e-07
M81360 Babesia bovis non-histone protein mRNA, complete cds.          55  1e-06
AF000195 Caenorhabditis elegans cosmid C32F10.                        54  2e-06
X53461;X53260 Human mRNA for upstream binding factor (hUBF)           54  2e-06
X53390 Human mRNA for upstream binding factor (hUBF)                  54  2e-06
M61725 Rat transcription factor UBF2 mRNA.                            54  2e-06
M61726 Rat transcription factor UBF1 mRNA.                            54  2e-06
X56687 H.sapiens mRNA for autoantigen NOR-90                          54  2e-06
X60831 Mouse ubf gene for transcription factor UBF                    53  3e-06
X76774 P.sativum mRNA for HMG1 protein                                53  4e-06
L42570 Cricetulus griseus ribosomal transcription factor (UBF1)...    53  5e-06
Y14075 Arabidopsis thaliana mRNA for HMG delta protein                53  5e-06
L42571 Cricetulus griseus ribosomal transcription factor (UBF2)...    53  5e-06
U10401 Caenorhabditis elegans cosmid T20B12                           52  6e-06
X53025 P.falciparum DNA for erythrocyte membrane-associated ant...    52  1e-05
U57939 Mus musculus mitochondrial transcription factor A gene, ...    50  2e-05
U63859 Mus musculus mitochondrial transcription factor A pseudo...    50  2e-05
U63858 Mus musculus mitochondrial transcription factor A mRNA, ...    50  2e-05
U13695 Human homolog of yeast mutL (hPMS1) gene, complete cds.        50  2e-05
L07107 Mus musculus HMG box protein mRNA, complete cds.               50  2e-05
U35728 Xenopus laevis transcription factor A (xl-mtTFA) mRNA, n...    50  4e-05
M62810 Human mitochondrial transcription factor 1 mRNA, complet...    49  7e-05
Z48008;Z71256 S.cerevisiae chromosome IV cosmid 8119.                 47  2e-04
L28094 Barley mRNA sequence.                                          47  3e-04
M63424 Tetrahymena thermophila high-mobility-group protein C (H...    46  5e-04
U63860 Mus musculus mitochondrial transcription factor A pseudo...    45  0.001
Z69727 S.pombe chromosome I cosmid c4G9.                              44  0.002
Y07542 X.laevis mRNA for SOX3 protein                                 39  0.047
X86381 P.paniscus SRY gene                                            39  0.047
Z30265 O.aries sry gene for sex determining region of Y chromosome    39  0.061
Z30327 B.taurus sry gene for sex-determining region Y                 39  0.080
Z30321 B.bonasus sry gene encoding sex-determining region Y           39  0.080
I34580 Sequence 1 from patent US 5596089.                             39  0.080
E11537 DNA from Y chromosome which contain bovine Sry gene.           39  0.080
U15569;L36821 Bos taurus sex determining region Y protein (SRY)...    39  0.080
D83256 Rainbow trout mRNA for SoxP1, complete cds.                    38  0.10
U66141 Mus musculus transcription factor Sox-M (sox-M) mRNA, pa...    38  0.10
AF017182 Mus musculus putative transcription factor (Sox10) mRN...    38  0.10
AJ001029 Rattus norvegicus mRNA for Sox10 protein                     38  0.10
AJ001183 Homo sapiens mRNA for Sox10 protein                          38  0.10
Z30646 C.hircus SRY gene for sex determining region Y                 38  0.14
L29543 Mus pahari sex-determining protein gene, 5' end.               36  0.69
X89730 R.norvegicus DNA for Sry gene (partial)                        36  0.69
U70658 Mus hortulanus sex determining protein (Sry) gene, compl...    35  1.2
AF009521 Mus spretus sex determining protein (Sry) gene, comple...    35  1.2
U70651 Mus musculus musculus sex determining protein (Sry) gene...    35  1.2
U70642 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70659 Mus spretus sex determining protein (Sry) gene, complete...    35  1.2
U70657 Mus musculus castaneus sex determining protein (Sry) gen...    35  1.2
U70654 Mus musculus musculus sex determining protein (Sry) gene...    35  1.2
U70653 Mus musculus musculus sex determining protein (Sry) gene...    35  1.2
U70652 Mus musculus musculus sex determining protein (Sry) gene...    35  1.2
U70650 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70649 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70648 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70647 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70646 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70645 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70644 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
U70641 Mus musculus domesticus sex determining protein (Sry) gene,    35  1.2
L29550 Mus spicilegus Y-linked sex determining (Sry) gene, part...    35  1.2
L29544 Mus spretus sex-determing protein gene, 5' end.                35  1.2
L29551 Mus musculus domesticus Y-linked sex determining (Sry) g...    35  1.2
AF009519 Mus musculus domesticus sex determining protein (Sry) ...    35  1.2
U03645 Mus musculus domesticus Torino (Sry) gene, complete cds.       35  1.2

>Y00463 Rat mRNA for high mobility group protein HMG1
           Length = 825
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 31  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 210

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 211 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 390

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 391 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 534


>Z11997 M.musculus mRNA for non-histone chromosomal high-mobility
           group 1
           Length = 2231
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 76  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 255

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 256 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 435

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 436 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 579


>M63852 Rat high mobility group 1 protein synthetic gene, complete
           cds.
           Length = 924
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 92  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 271

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 272 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 451

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 452 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 595


>M64986 Rat amphoterin mRNA, complete cds.
           Length = 1225
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 126 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 305

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 306 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 485

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 486 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 629


>L38477 Mus musculus (clone Clebp-1) high mobility group 1 protein
           (HMG-1)
           Length = 1225
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 77  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 256

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 257 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 436

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 437 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 580


>U00431 Mus musculus HMG-1 mRNA, complete cds.
           Length = 1308
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 149 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 328

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 329 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 508

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 509 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 652


>X12796 Bovine mRNA for high mobility group 1 (HMG1) protein
           Length = 1236
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 122 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 301

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 302 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 481

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 482 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 625


>X12597 Human mRNA for high mobility group-1 protein (HMG-1).
           Length = 1009
           
 Score =  326 bits (826), Expect = 2e-88
 Identities = 154/168 (91%), Positives = 154/168 (91%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 56  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 235

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 236 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 415

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 416 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 559


>M21683;M21684 Pig nonhistone protein HMG1 mRNA, complete cds.
           Length = 2192
           
 Score =  324 bits (821), Expect = 9e-88
 Identities = 153/168 (91%), Positives = 153/168 (91%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 12  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 191

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 192 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 371

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDK P              DIAAYRAKGKPD
Sbjct: 372 IGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPD 515


>D63874 Human mRNA for HMG-1, complete cds.
           Length = 1194
           
 Score =  322 bits (817), Expect = 3e-87
 Identities = 153/168 (91%), Positives = 153/168 (91%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPR KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 80  GKGDPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 259

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 260 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 439

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 440 IGDVAKKLGEMWNNTAADDKQPYEKKAEKLKEKYEKDIAAYRAKGKPD 583


>L08048 Human non-histone chromosomal protein (HMG-1)
           retropseudogene.
           Length = 1814
           
 Score =  319 bits (810), Expect = 2e-86
 Identities = 152/168 (90%), Positives = 152/168 (90%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKP GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct: 661 GKGDPKKPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 840

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKR PSAFFLFCSEYRPKIKGEHPGLS
Sbjct: 841 DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGLS 1020

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 1021IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 1164


>Z95115 Human DNA sequence from BAC 445C9 on chromosome 22q12.1.
             Length = 131398
             
 Score =  303 bits (767), Expect = 2e-81
 Identities = 145/167 (86%), Positives = 146/167 (86%)
 Frame = +1

Query: 2     KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
             KGDPKK RGKMSS+AFF QTCRE HKKKHPDASVN SEFSKKCSERWKTMSAKEKGKFED
Sbjct: 58000 KGDPKKLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFED 58179

Query: 62    MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             MAKADKA YEREMKTYIPPKGETKKKFKDPNAPKR PSAFFLFCS YRPKIKGEHPGLSI
Sbjct: 58180 MAKADKAHYEREMKTYIPPKGETKKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGLSI 58359

Query: 122   GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
             GDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 58360 GDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 58500


>U21933 Xenopus laevis high mobility group protein-1 (HMG-1) mRNA,
           complete
           Length = 1552
           
 Score =  297 bits (752), Expect = 1e-79
 Identities = 138/168 (82%), Positives = 148/168 (87%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKPRGKMSSYA+FVQTCREEHKKKHPDASVNF+EFSKKCSERWKTMS KEK KFE
Sbjct: 60  GKGDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMS-KEKTKFE 236

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAKADK RYEREMK+YIPPKGETKK+FKDPNAPKRPPSAFFLFCS++RPKIKGEHPG +
Sbjct: 237 DMAKADKVRYEREMKSYIPPKGETKKRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGST 416

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD+AKKLGEMWNNTA DDK P              D+AAYRAKGKP+
Sbjct: 417 IGDIAKKLGEMWNNTATDDKLPYERRAAKLKEKYEKDVAAYRAKGKPE 560


>X62534 H.sapiens HMG-2 mRNA
           Length = 1301
           
 Score =  284 bits (718), Expect = 1e-75
 Identities = 132/168 (78%), Positives = 142/168 (83%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 218 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 397

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLS
Sbjct: 398 DMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 577

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK +
Sbjct: 578 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 721


>J02895 Pig non-histone chromosomal protein (HMG2) mRNA, complete
           cds.
           Length = 1153
           
 Score =  283 bits (717), Expect = 1e-75
 Identities = 132/166 (79%), Positives = 141/166 (84%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 147 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 326

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           DMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLS
Sbjct: 327 DMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 506

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK
Sbjct: 507 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGK 644


>D84418 Rat mRNA for chromosomal protein HMG2, complete cds.
           Length = 1072
           
 Score =  282 bits (715), Expect = 2e-75
 Identities = 131/168 (77%), Positives = 142/168 (83%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 78  GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 257

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           D+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLS
Sbjct: 258 DLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS 437

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK +
Sbjct: 438 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 581


>Z46757 M.musculus mRNA for high mobility group 2 protein.
           Length = 870
           
 Score =  279 bits (707), Expect = 2e-74
 Identities = 131/168 (77%), Positives = 141/168 (82%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFE
Sbjct: 100 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 279

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           D+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE RPKIK EHPGLS
Sbjct: 280 DLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGLS 459

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAKGK +
Sbjct: 460 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSE 603


>M83235 Gallus gallus non-histone chromosomal protein (HMG2) mRNA,
           complete
           Length = 1083
           
 Score =  279 bits (706), Expect = 3e-74
 Identities = 129/168 (76%), Positives = 140/168 (82%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYA+FVQTCREEHKKKHPD+SVNF+EFS+KCSERWKTMS+KEKGKFE
Sbjct: 86  GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE 265

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           +MAK DKARY+REMK Y+PPKGE K K KDPNAPKRPPSAFFLFCSE+RPKIK +HPGLS
Sbjct: 266 EMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS 445

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+   A DKQP              DIAAYRAK K D
Sbjct: 446 IGDTAKKLGEMWSEQLAKDKQPYEQKAAKLKEKYEKDIAAYRAKSKSD 589


 Score = 33.2 bits (74), Expect = 3.5
 Identities = 20/78 (25%), Positives = 34/78 (42%), Gaps = 2/78 (2%)
 Frame = +2

Query: 63  AKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI- 121
           A+  +AR          P  E      DPN P+   S++  F    R + K +HP  S+ 
Sbjct: 14  AQGARARVANAKPPQPGPAAELAMGKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVN 193

Query: 122 -GDVAKKLGEMWNNTAADDK 140
             + ++K  E W   ++ +K
Sbjct: 194 FAEFSRKCSERWKTMSSKEK 253


>M80574 Gallus domesticus high-mobility group-2 protein (HMG-2)
           mRNA,
           Length = 995
           
 Score =  275 bits (696), Expect = 4e-73
 Identities = 127/168 (75%), Positives = 139/168 (82%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYA+FVQTC  EHKKKHPD+SVNF+EFS+KCSERWKTMS+KEKGKFE
Sbjct: 103 GKGDPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE 282

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           +MAK DKARY+REMK Y+PPKGE K K KDPNAPKRPPSAFFLFCSE+RPKIK +HPGLS
Sbjct: 283 EMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS 462

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A DKQP              DIAAYRAK K D
Sbjct: 463 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKSKSD 606


>D30765 Xenopus laevis mRNA for HMG-X protein, complete cds.
           Length = 1081
           
 Score =  273 bits (690), Expect = 2e-72
 Identities = 129/168 (76%), Positives = 139/168 (81%), Gaps = 1/168 (0%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYA+FVQTCREEHKKKHPD SVNFS+FSKKCSERWK+MSAKEKGKFE
Sbjct: 108 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMSAKEKGKFE 287

Query: 61  DMAKADKARYEREMKTYIPPKGETK-KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 119
           D+AK DKARYEREMKTYIPPKGETK K+ KDPNAPKRPPSAFF+FCSE+RP+IK E PGL
Sbjct: 288 DLAKGDKARYEREMKTYIPPKGETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETPGL 467

Query: 120 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           SIGD AKKLGE+W      DK P              D+AAYRAKGK D
Sbjct: 468 SIGDTAKKLGELWAEQTPKDKLPHEQKAAKLKEKYEKDVAAYRAKGKSD 614


>X02666 Trout mRNA for high mobility group protein HMG-T
           Length = 716
           
 Score =  266 bits (674), Expect = 2e-70
 Identities = 123/163 (75%), Positives = 137/163 (83%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP+KPRGKMSSYA+FVQT REEHKKKHP+ASVNFSEFSKKCSERWKTMSAKEKGKFED+A
Sbjct: 10  DPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLA 189

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 123
           K DK RYEREM++YIPPKGE KK+FKDPNAPKRP SAFF+FC+++RP++KGE PGLSIGD
Sbjct: 190 KLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGD 369

Query: 124 VAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
           VAKKLGE WNN  A+DK P              DI AYR KGK
Sbjct: 370 VAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGK 498


 Score = 34.0 bits (76), Expect = 2.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 89  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDK 140
           KDP  P+   S++  F    R + K +HP  S+   + +KK  E W   +A +K
Sbjct: 7   KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEK 168


>U31513 Ambystoma mexicanum high mobility group protein-2 (HMG-2)
           mRNA,
           Length = 1048
           
 Score =  261 bits (659), Expect = 9e-69
 Identities = 128/168 (76%), Positives = 137/168 (81%), Gaps = 2/168 (1%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KPRGKMSSYA+FVQTCREEHKKKHPDASVNF+EFSKKCSERWKTM+AKEKGKFE
Sbjct: 22  GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDASVNFAEFSKKCSERWKTMNAKEKGKFE 201

Query: 61  DMAKADKARYEREMKTYIPPKGETK-KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 119
           DMAK DK RY+REMK+Y+PPKGETK KK KDPNAPKR PSAFFLFCSE+R KIK + PGL
Sbjct: 202 DMAKGDKVRYDREMKSYVPPKGETKGKKKKDPNAPKRLPSAFFLFCSEHRLKIKADCPGL 381

Query: 120 SIGDVAKKLGEMWNNTAADDKQPX-XXXXXXXXXXXXXDIAAYRAKGKPD 168
           SIGD AKKLGE W+     DK P               DIAAYRAKGK D
Sbjct: 382 SIGDTAKKLGEKWSEQTPKDKIPSFEQKAAKLKEKYEKDIAAYRAKGKVD 531


>X98857 L.fluviatilis mRNA for HMG protein
           Length = 1650
           
 Score =  257 bits (649), Expect = 1e-67
 Identities = 117/166 (70%), Positives = 138/166 (82%), Gaps = 1/166 (0%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDPKKP+GKMSSYA+FVQTCREEHKKK+P+ASVNF+EFSKKCSERWKTMS KEK +FE
Sbjct: 76  GKGDPKKPKGKMSSYAYFVQTCREEHKKKNPEASVNFAEFSKKCSERWKTMSEKEKTRFE 255

Query: 61  DMAKADKARYEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 119
           DMAK DK RY+REMKTY+PPKGE   +K KDPNAPKRPPSAFF++C+EYR K++ E+PGL
Sbjct: 256 DMAKVDKVRYDREMKTYVPPKGERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENPGL 435

Query: 120 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
           +IG +AKKLGEMWNN  AD+K                D+A+YR+KGK
Sbjct: 436 TIGSIAKKLGEMWNNAPADEKSIYERKTAKLKEKYDKDMASYRSKGK 576


>Y00365 Chinese hamster HMG-1 gene for high mobility group protein 1
           Length = 2058
           
 Score =  252 bits (637), Expect = 3e-66
 Identities = 120/134 (89%), Positives = 120/134 (89%)
 Frame = +1

Query: 35  VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP 94
           VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP
Sbjct: 1   VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAP 180

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXX 154
           KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP            
Sbjct: 181 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 360

Query: 155 XXDIAAYRAKGKPD 168
             DIAAYRAKGKPD
Sbjct: 361 EKDIAAYRAKGKPD 402


 Score = 44.5 bits (103), Expect = 0.001
 Identities = 22/74 (29%), Positives = 37/74 (49%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+   S++  F    R + K +HP  S+   + +KK  E W   +A +K  +E  A
Sbjct: 166 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKA 339

Query: 64  KADKARYEREMKTY 77
              K +YE+++  Y
Sbjct: 340 AKLKEKYEKDIAAY 381


>X63463 G.gallus HMG2a mRNA
           Length = 1073
           
 Score =  251 bits (634), Expect = 8e-66
 Identities = 118/167 (70%), Positives = 135/167 (80%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWKTMS+KEK KF++
Sbjct: 67  KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDE 246

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
           MAKADK RY+REMK Y P KG  KK  KDPNAPKRPPSAFFLFCSE+RPKIK  +PG+SI
Sbjct: 247 MAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSAFFLFCSEFRPKIKSTNPGISI 420

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GDVAKKLGEMWNN +  +KQP              D+A Y++KGK D
Sbjct: 421 GDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 561


>AF022465 Mus musculus high mobility group protein homolog HMG4
           (Hmg4) mRNA,
           Length = 1502
           
 Score =  250 bits (633), Expect = 1e-65
 Identities = 117/167 (70%), Positives = 135/167 (80%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWKTMS+KEK KF++
Sbjct: 34  KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDE 213

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
           MAKADK RY+REMK Y P KG  KK  KDPNAPKRPPS FFLFCSE+RPKIK  +PG+SI
Sbjct: 214 MAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 387

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GDVAKKLGEMWNN + ++KQP              D+A Y++KGK D
Sbjct: 388 GDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFD 528


>X67668 M.musculus mRNA for high mobility group 2 protein
           Length = 847
           
 Score =  250 bits (631), Expect = 2e-65
 Identities = 119/168 (70%), Positives = 132/168 (77%)
 Frame = +1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           GKGDP KP GKMSSYAFFVQTCREEHKKKHP++SVNF+E SKKCS+RWKTMSAKE  KFE
Sbjct: 139 GKGDPIKPLGKMSSYAFFVQTCREEHKKKHPNSSVNFAEISKKCSKRWKTMSAKENSKFE 318

Query: 61  DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           D+AK+DKA Y REMK Y+ PKG+ K K KDPNAPKRPPSAF LFCSE RPKIK E+PGLS
Sbjct: 319 DLAKSDKACYYREMKNYVSPKGDKKGKKKDPNAPKRPPSAFCLFCSENRPKIKIEYPGLS 498

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           IGD AKKLGEMW+  +A +KQP              D AAYR KGK +
Sbjct: 499 IGDTAKKLGEMWSEQSAKEKQPYEQKAAKLKEKYEKDFAAYRVKGKSE 642


>Y10043 Homo sapiens mRNA for high mobility group protein HMG2a
           Length = 1633
           
 Score =  245 bits (618), Expect = 6e-64
 Identities = 115/167 (68%), Positives = 131/167 (77%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           KGDPKKP+GK S+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWKT+S KEK KF++
Sbjct: 93  KGDPKKPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDE 272

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
           MAKADK RY+REMK Y P KG  KK  KDPNAPKRPPS FFLFCSE+RPKIK  +PG+SI
Sbjct: 273 MAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 446

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GDVAKKLGEMWNN    +KQP              D+A Y++KGK D
Sbjct: 447 GDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD 587


>D14314 Chicken mRNA for HMG-1, complete cds.
           Length = 740
           
 Score =  243 bits (613), Expect = 2e-63
 Identities = 116/167 (69%), Positives = 133/167 (79%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           KGDPKKP+GKMS+YAFFVQTCREEHKK +P+  VNF+EFSKKCSERWKTMS+KEK KF++
Sbjct: 27  KGDPKKPKGKMSAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDE 203

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
           MAKADK RY+REMK Y P KG  KKK  DPNAPKRPPS FFLFCSE+RPKIK  +PG+SI
Sbjct: 204 MAKADKVRYDREMKDYGPAKGGKKKK--DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISI 377

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GDVAKKLGEMWNN +  +KQP              D+A Y++KGK D
Sbjct: 378 GDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFD 518


>Z17240 Homo sapiens for mRNA encoding HMG2B.
           Length = 1066
           
 Score =  235 bits (594), Expect = 4e-61
 Identities = 110/146 (75%), Positives = 120/146 (81%)
 Frame = +1

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKG 82
           REEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+PPKG
Sbjct: 1   REEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKG 180

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           + K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+  +A DKQP
Sbjct: 181 DKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQP 360

Query: 143 XXXXXXXXXXXXXXDIAAYRAKGKPD 168
                         DIAAY AKGK +
Sbjct: 361 YEQKAAKLKEKYEKDIAAYGAKGKSE 438


 Score = 53.5 bits (126), Expect = 3e-06
 Identities = 30/93 (32%), Positives = 47/93 (50%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+   S++  F    R + K +HP  S+   + +KK  E W   SAK+K  +E 
Sbjct: 196 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQ 369

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAP 94
            A   K +YE+++  Y   KG+++   K P  P
Sbjct: 370 KAAKLKEKYEKDIAAY-GAKGKSEAGKKGPGRP 465


>X80457 M.musculus HMG1 gene
           Length = 2547
           
 Score =  189 bits (475), Expect = 3e-47
 Identities = 98/98 (100%), Positives = 98/98 (100%), Gaps = 49/98 (50%)
 Frame = +2

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK----------- 49
           GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK           
Sbjct: 176 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGL*RC*VPL 355

Query: 50  --------------------------------------TMSAKEKGKFEDMAKADKARYE 71
                                                 TMSAKEKGKFEDMAKADKARYE
Sbjct: 356 SCKLG*TGWVFSLLYDY*SALGWHIEHLYVKFTNNSF*TMSAKEKGKFEDMAKADKARYE 535

Query: 72  REMKTYIPPKGETKKKFKDPNAPKRPP 98
           REMKTYIPPKGETKKKFKDPNAPKRPP
Sbjct: 536 REMKTYIPPKGETKKKFKDPNAPKRPP 616


 Score = 97.9 bits (240), Expect = 1e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = +2

Query: 99   SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP
Sbjct: 1010 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1141


 Score = 35.6 bits (80), Expect = 0.69
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +2

Query: 10   GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR 69
            G  S++  F    R + K +HP  S+   + +KK  E W   +A +K  +E  A   K +
Sbjct: 1001 GFSSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 1174

Query: 70   YER 72
            YE+
Sbjct: 1175 YEK 1183


>U13881 Drosophila melanogaster DNA-binding protein (DSP1) mRNA,
           complete
           Length = 1900
           
 Score =  183 bits (461), Expect = 1e-45
 Identities = 84/160 (52%), Positives = 113/160 (70%), Gaps = 6/160 (3%)
 Frame = +1

Query: 7   KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
           KPRG+M++YA+FVQTCREEHKKKHPD +V F+EFS+KC+ERWKTM  KEK +F +MA+ D
Sbjct: 712 KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKD 891

Query: 67  KARYEREMKTYIPPK------GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
           K RYE EM+ Y+PPK      G+ +K+ KDPNAPKR  SAFF FC++ R K+K  +P   
Sbjct: 892 KQRYEAEMQNYVPPKGALWDRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFG 1071

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
           +GD+AK+LG  W++   + KQ               ++  Y+  GK
Sbjct: 1072VGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGK 1209


>X81456 D.melanogaster mRNA for an open reading frame
            Length = 2852
            
 Score =  183 bits (461), Expect = 1e-45
 Identities = 84/160 (52%), Positives = 113/160 (70%), Gaps = 6/160 (3%)
 Frame = +2

Query: 7    KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
            KPRG+M++YA+FVQTCREEHKKKHPD +V F+EFS+KC+ERWKTM  KEK +F +MA+ D
Sbjct: 1250 KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRFHEMAEKD 1429

Query: 67   KARYEREMKTYIPPK------GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
            K RYE EM+ Y+PPK      G+ +K+ KDPNAPKR  SAFF FC++ R K+K  +P   
Sbjct: 1430 KQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEFG 1609

Query: 121  IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGK 166
            +GD+AK+LG  W++   + KQ               ++  Y+  GK
Sbjct: 1610 VGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGK 1747


>L06453 Strongylocentrotus purpuratus (clone C) high mobility group
           1
           Length = 1755
           
 Score =  165 bits (413), Expect = 6e-40
 Identities = 81/164 (49%), Positives = 102/164 (61%), Gaps = 3/164 (1%)
 Frame = +2

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           D  KPRG+MS+YA+FVQ  R EH K HP++ V F+EFSK CS RWK +  K KG F + +
Sbjct: 119 DSSKPRGRMSAYAYFVQDSRAEHGKNHPNSPVRFAEFSKDCSARWKALEEKGKGVFHEKS 298

Query: 64  KADKARYEREMKTYIPPKGETKK---KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
             DK RY+REM++Y PPKGE  K   + KDP+APKR  SAFF+F  E R  IK  HP  S
Sbjct: 299 MRDKVRYDREMQSYKPPKGEKNKRRRRRKDPDAPKRNLSAFFIFSGENRAAIKSVHPNWS 478

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKP 167
           +GD+AK+L   W    A +K P               +A Y+AK KP
Sbjct: 479 VGDIAKELAVRWRAMTAGEKIPFDKGAAKDKERYIKAMAEYKAKAKP 619


 Score = 49.2 bits (115), Expect = 5e-05
 Identities = 29/97 (29%), Positives = 48/97 (48%)
 Frame = +2

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  +S++  F    R   K  HP+ SV   + +K+ + RW+ M+A EK  F+  A
Sbjct: 386 DPDAPKRNLSAFFIFSGENRAAIKSVHPNWSVG--DIAKELAVRWRAMTAGEKIPFDKGA 559

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSA 100
             DK RY + M  Y       K++ K+ ++     S+
Sbjct: 560 AKDKERYIKAMAEYKAKAKPMKRQVKESSSSSSSDSS 670


>D14718 Human chromosomal protein HMG1 related gene.
            Length = 2140
            
 Score =  162 bits (407), Expect = 3e-39
 Identities = 79/105 (75%), Positives = 81/105 (76%)
 Frame = +3

Query: 64   KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 123
            K DKA YERE+KT IPPKGETKKKFKDPNAPKRPPSAFFLFCSEY PKIKGE  GL I D
Sbjct: 1110 KGDKAHYEREVKT*IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEQLGLPISD 1289

Query: 124  VAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
            V KKLGEMWNNTAA+DKQP              DIAAY AKGKPD
Sbjct: 1290 VVKKLGEMWNNTAAEDKQPCEKKAAKLKEKYKKDIAAY*AKGKPD 1424


 Score =  138 bits (344), Expect = 8e-32
 Identities = 67/95 (70%), Positives = 75/95 (78%)
 Frame = +1

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKGD KKPRGKMSSYAFFVQTCREEHKK+HPDASVNFSEFSKK SERWKTMSAKEKG+FE
Sbjct: 922  GKGDSKKPRGKMSSYAFFVQTCREEHKKQHPDASVNFSEFSKKGSERWKTMSAKEKGQFE 1101

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            DMAK  +   + + K    PKG  K+  + P  P+
Sbjct: 1102 DMAKVTRPIMKEK*KPKSLPKGRQKRSSRIPMHPR 1206


 Score = 37.5 bits (85), Expect = 0.18
 Identities = 22/74 (29%), Positives = 35/74 (46%), Gaps = 1/74 (1%)
 Frame = +3

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKK-KHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
            DP  P+   S++  F   C E H K K     +  S+  KK  E W   +A++K   E  
Sbjct: 1188 DPNAPKRPPSAFFLF---CSEYHPKIKGEQLGLPISDVVKKLGEMWNNTAAEDKQPCEKK 1358

Query: 63   AKADKARYEREMKTY 77
            A   K +Y++++  Y
Sbjct: 1359 AAKLKEKYKKDIAAY 1403


>AF009343 Mus musculus HMG-like protein (Trf) mRNA, complete cds.
           Length = 1328
           
 Score =  155 bits (387), Expect(2) = 7e-38
 Identities = 72/80 (90%), Positives = 75/80 (93%)
 Frame = +3

Query: 7   KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
           + R KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD
Sbjct: 156 RSRDKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 335

Query: 67  KARYEREMKTYIPPKGETKK 86
           KARY REMKTY PPKG+ K+
Sbjct: 336 KARYGREMKTYTPPKGDQKE 395


 Score =  154 bits (385), Expect = 1e-36
 Identities = 77/115 (66%), Positives = 84/115 (72%)
 Frame = +1

Query: 54  KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 113
           K++G  +   +  +   E + K   PPK ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK
Sbjct: 298 KKRGNLKIWQRLTRLVMEEK*KPTPPPK-ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 474

Query: 114 GEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           GEHP LSIGD+AKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 475 GEHPRLSIGDLAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 639


 Score = 44.5 bits (103), Expect = 0.001
 Identities = 22/74 (29%), Positives = 37/74 (49%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+   S++  F    R + K +HP  S+   + +KK  E W   +A +K  +E  A
Sbjct: 403 DPNAPKRPPSAFFLFCSEYRPKIKGEHPRLSIG--DLAKKLGEMWNNTAADDKQPYEKKA 576

Query: 64  KADKARYEREMKTY 77
              K +YE+++  Y
Sbjct: 577 AKLKEKYEKDIAAY 618


 Score = 24.7 bits (52), Expect(2) = 7e-38
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 1   GKGDPKKPR 9
           GKGDPKKPR
Sbjct: 140 GKGDPKKPR 166


>M83665 Human high mobility group 2 protein (HMG-2) gene, complete
            cds.
            Length = 4341
            
 Score =  107 bits (264), Expect = 2e-22
 Identities = 46/55 (83%), Positives = 50/55 (90%)
 Frame = +1

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKE 55
            GKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWK    ++
Sbjct: 1672 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKVRQERD 1836


 Score = 90.1 bits (220), Expect(2) = 2e-35
 Identities = 40/50 (80%), Positives = 45/50 (90%)
 Frame = +1

Query: 49   KTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 98
            +TMSAKEK KFEDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPP
Sbjct: 2101 QTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPP 2250


 Score = 81.5 bits (198), Expect(2) = 2e-35
 Identities = 36/44 (81%), Positives = 39/44 (87%)
 Frame = +2

Query: 99   SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            SAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+  +A DKQP
Sbjct: 2324 SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQP 2455


 Score = 38.7 bits (88), Expect = 0.080
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +2

Query: 13   SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72
            S++  F    R + K +HP  S+   + +KK  E W   SAK+K  +E  A   K +YE+
Sbjct: 2324 SAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK 2497


>X89811 D.melanogaster DNA for SSRP2 gene
            Length = 5713
            
 Score = 82.3 bits (200), Expect(2) = 4e-33
 Identities = 33/43 (76%), Positives = 41/43 (94%)
 Frame = +1

Query: 7    KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 49
            KPRG+M++YA+FVQTCREEHKKKHPD +V F+EFS+KC+ERWK
Sbjct: 3661 KPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWK 3789


 Score = 81.5 bits (198), Expect(2) = 4e-33
 Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 49/92 (53%)
 Frame = +2

Query: 50   TMSAKEKGKFEDMAKADKARYEREMKTYIPPK------GETKKKFKDPNAPKRP------ 97
            TM  KEK +F +MA+ DK RYE EM+ Y+PPK      G+ +K+ KDPNAPKR       
Sbjct: 3866 TMVDKEKKRFHEMAEKDKQRYEAEMQNYVPPKGAVVGRGKKRKQIKDPNAPKRSL*VRSK 4045

Query: 98   -------------------------------------PSAFFLFCSEYRPKIKGEHPGLS 120
                                                  SAFF FC++ R K+K  +P   
Sbjct: 4046 VNYHIIRYSAYKSM*LQEI*SESDQ**CLLCSILPLFRSAFFWFCNDERNKVKALNPEFG 4225

Query: 121  IGDVAKKLGEMWNNTAADDKQ 141
            +GD+AK+LG  W++   + KQ
Sbjct: 4226 VGDIAKELGRKWSDVDPEVKQ 4288


 Score = 40.2 bits (92), Expect = 0.027
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 16   AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72
            AFF     E +K K  +      + +K+   +W  +  + K K+E MA+ DKARYER
Sbjct: 4163 AFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYER 4333


>X80466 M.musculus HMG1-R-227 gene
          Length = 184
          
 Score =  133 bits (331), Expect = 3e-30
 Identities = 61/61 (100%), Positives = 61/61 (100%)
 Frame = +1

Query: 4  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
          DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA
Sbjct: 1  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 180

Query: 64 K 64
          K
Sbjct: 181K 183


 Score = 32.8 bits (73), Expect = 4.6
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 90  DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDK 140
           DP  P+   S++  F    R + K +HP  S+   + +KK  E W   +A +K
Sbjct: 1   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 159


>X80462 M.musculus HMG1-R-154 gene
          Length = 190
          
 Score =  123 bits (307), Expect = 2e-27
 Identities = 57/62 (91%), Positives = 58/62 (92%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
          GKGDPKKPRGKMSSYA FV+TC EEHKKKHPDASVNFS FSKKCSERWKTMSAKEKGKFE
Sbjct: 4  GKGDPKKPRGKMSSYALFVKTCWEEHKKKHPDASVNFSGFSKKCSERWKTMSAKEKGKFE 183

Query: 61 DM 62
           M
Sbjct: 184GM 189


>U51677 Human non-histone chromatin protein HMG1 (HMG1) gene,
          complete cds.
          Length = 2575
          
 Score =  111 bits (276), Expect = 7e-24
 Identities = 50/54 (92%), Positives = 50/54 (92%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54
          GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK    K
Sbjct: 4  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKVRGLK 165


 Score =  107 bits (264), Expect = 2e-22
 Identities = 51/55 (92%), Positives = 51/55 (92%)
 Frame = +3

Query: 50  TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLF 104
           TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP    LF
Sbjct: 330 TMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP*VSCLF 494


 Score = 97.9 bits (240), Expect = 1e-19
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = +2

Query: 99   SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP
Sbjct: 971  SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 1102


 Score = 34.8 bits (78), Expect = 1.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 13   SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72
            S++  F    R + K +HP  S+   + +KK  E W   +A +K  +E  A   K +YE+
Sbjct: 971  SAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEK 1144


>Z93931 Human DNA sequence from PAC 438G17 on chromosome 6q22. Contains
             Length = 148198
             
 Score =  109 bits (269), Expect = 5e-23
 Identities = 54/81 (66%), Positives = 64/81 (78%), Gaps = 11/81 (13%)
 Frame = -3

Query: 2     KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
             K DPK+P+GKMS+YAFFVQ  REEHKKK+ +  +NF+EFSK CSERWKTMS KEK KF++
Sbjct: 95804 KVDPKEPKGKMSAYAFFVQMGREEHKKKNLEFPINFTEFSKNCSERWKTMSGKEKSKFDE 95625

Query: 62    MAKADKARY-----------EREMKTYIPPKG 82
             MAKADK              E   +T  PPKG
Sbjct: 95624 MAKADKYTMIGR*RIKNQLREARRRTLTPPKG 95529


 Score = 62.5 bits (149), Expect(2) = 7e-13
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = -2

Query: 70    YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAK 126
             Y+ E+K   P KG  KK   +PNAPKRPPS FFLF SE+  KIK  +P +SIGD++K
Sbjct: 95601 YDWEIKN*EPAKGGKKK---NPNAPKRPPSGFFLFYSEFCHKIKSTNPDISIGDMSK 95440


 Score = 33.2 bits (74), Expect(2) = 7e-13
 Identities = 18/43 (41%), Positives = 22/43 (50%)
 Frame = -1

Query: 126   KKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
             KKLGEMWNN    +KQP              D+A  ++KGK D
Sbjct: 95443 KKLGEMWNNLNDSEKQP-YITKVAQLKKYEKDVADCKSKGKFD 95318


>L32859 Rainbow trout HMG-1 gene exons 2-5, complete cds.
            Length = 3882
            
 Score =  100 bits (246), Expect = 2e-20
 Identities = 43/46 (93%), Positives = 46/46 (99%)
 Frame = +2

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 49
            DP+KPRGKMSSYA+FVQTCREEHKKKHP+ASVNFSEFSKKCSERWK
Sbjct: 1286 DPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWK 1423


 Score = 97.1 bits (238), Expect = 2e-19
 Identities = 44/57 (77%), Positives = 48/57 (84%)
 Frame = +2

Query: 41   SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 97
            S  C    KTMSAKEKGKFED+AK DK RYEREM++YIPPKGE KK+FKDPNAPKRP
Sbjct: 1820 SSCCCSSLKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRP 1990


 Score = 78.0 bits (189), Expect = 1e-13
 Identities = 34/55 (61%), Positives = 42/55 (75%)
 Frame = +3

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            F  P +     SAFF+FC+++RP++KGE PGLSIGDVAKKLGE WNN  A+DK P
Sbjct: 2268 FLPPTSLPSSRSAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVP 2432


 Score = 34.4 bits (77), Expect = 1.6
 Identities = 18/63 (28%), Positives = 33/63 (51%)
 Frame = +3

Query: 13   SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 72
            S++  F    R + K + P  S+   + +KK  E+W  ++A++K  +E  A   K +YE+
Sbjct: 2301 SAFFIFCADFRPQVKGETPGLSIG--DVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEK 2474

Query: 73   EMK 75
              K
Sbjct: 2475 VNK 2483


>AC002526 Human PAC clone DJ0558L21 from Xq23, complete sequence.
              Length = 134580
              
 Score = 98.7 bits (242), Expect = 7e-20
 Identities = 59/125 (47%), Positives = 71/125 (56%)
 Frame = +3

Query: 2      KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
              KGD + P+GKMS+  FFV+TCREEHKK  PD  V+F    K    R +    KEK     
Sbjct: 123669 KGDLRNPKGKMSANVFFVKTCREEHKKLKPDGPVSFLRIFKSYL-RGERQFGKEKINLIK 123845

Query: 62     MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
                +  K   + EMK Y P KG  KKK +   A   P S FFLFCSE+ PKIK   PG+S+
Sbjct: 123846 SQRWVKDA-DWEMKDYDPAKGHKKKKVR--KAC*SPASEFFLFCSEFYPKIKSPKPGVSV 124016

Query: 122    GDVAK 126
               DV K
Sbjct: 124017 ADVTK 124031


>AF003626 Homo sapiens cosmids IM0525, LC1233, Qc3C1, LB1439, Qc12C11
             and
             Length = 86769
             
 Score = 97.1 bits (238), Expect = 2e-19
 Identities = 41/48 (85%), Positives = 46/48 (95%)
 Frame = +2

Query: 2     KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 49
             KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+  VNF+EFSKKCSERWK
Sbjct: 66767 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWK 66910


 Score = 77.6 bits (188), Expect = 2e-13
 Identities = 34/46 (73%), Positives = 38/46 (81%)
 Frame = +1

Query: 97    PPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
             P S FFLFCSE+RPKIK  +PG+SIGDVAKKLGEMWNN    +KQP
Sbjct: 68284 PRSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQP 68421


 Score = 76.9 bits (186), Expect = 3e-13
 Identities = 39/59 (66%), Positives = 45/59 (76%)
 Frame = +3

Query: 40    FSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 98
             F++ CS   +TMS KEK KF++MAKADK RY+REMK Y P KG  KK  KDPNAPKRPP
Sbjct: 67188 FNESCS--LQTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPP 67352


>L32954 Rainbow trout HMG-T2 gene exons 1-4, complete cds.
          Length = 1368
          
 Score = 92.1 bits (225), Expect = 7e-18
 Identities = 40/49 (81%), Positives = 42/49 (85%)
 Frame = +3

Query: 4  DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 52
          DP KP+GK SSYAFFV TCREEHKKKHP  SVNFSEFSKKCSERW+  S
Sbjct: 42 DPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERWRVSS 188


 Score = 78.4 bits (190), Expect = 9e-14
 Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 2/57 (3%)
 Frame = +2

Query: 48  WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE--TKKKFKDPNAPKRPPSAFFLF 104
           ++TMSAKEK KFEDMAK DK RY+++MK Y+PPKG     K+ KDPNAPKRPP    L+
Sbjct: 347 FQTMSAKEKVKFEDMAKGDKVRYDKDMKGYVPPKGSKAAGKRKKDPNAPKRPP*VLHLY 523


 Score = 66.3 bits (159), Expect = 4e-10
 Identities = 36/77 (46%), Positives = 51/77 (65%), Gaps = 21/77 (27%)
 Frame = +3

Query: 66  DKARYEREMKTYIPPKGETK---------------------KKFKDPNAPKRPPSAFFLF 104
           D  + ERE +T +PPKG  K                      +   PN+     SAFF+F
Sbjct: 450 DLRQQERERRTPMPPKGHRKYSTYTTIDFCSVLFRFWN*MCSQHSIPNS-----SAFFVF 614

Query: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           C+E+R +IK ++PG+ IGD+AK+LG +W      DKQP
Sbjct: 615 CAEHRGRIKADNPGMGIGDIAKQLGLLWGKQTPKDKQP 728


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 18/44 (40%), Positives = 26/44 (58%), Gaps = 2/44 (4%)
 Frame = +3

Query: 89  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMW 132
           KDPN PK   S++  F +  R + K +HPG S+   + +KK  E W
Sbjct: 39  KDPNKPKGKTSSYAFFVATCREEHKKKHPGTSVNFSEFSKKCSERW 176


>X80465 M.musculus HMG1-R-168 gene
          Length = 181
          
 Score = 89.7 bits (219), Expect = 3e-17
 Identities = 41/49 (83%), Positives = 44/49 (89%)
 Frame = +2

Query: 11 KMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 59
          K   YAFF+QTC+EEHK K+ DASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 35 KCPVYAFFMQTCQEEHKTKYLDASVNFSEFSKKCSERWKTMSAKEKGKF 181


>X80467 M.musculus HMG1-R-87 gene
           Length = 190
           
 Score = 58.6 bits (139), Expect(2) = 7e-17
 Identities = 25/27 (92%), Positives = 27/27 (99%)
 Frame = +2

Query: 36  NFSEFSKKCSERWKTMSAKEKGKFEDM 62
           NFSEFSKKCSERW+TM+AKEKGKFEDM
Sbjct: 107 NFSEFSKKCSERWETMTAKEKGKFEDM 187


 Score = 50.8 bits (119), Expect(2) = 7e-17
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDA 33
          GK DPKK RGKMSSYAFF+QT    HKKKH DA
Sbjct: 4  GKKDPKKLRGKMSSYAFFLQTFWV*HKKKHLDA 102


>X80461 M.musculus HMG1-R-145 gene
          Length = 196
          
 Score = 54.3 bits (128), Expect(2) = 1e-16
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +1

Query: 2  KGDPKKPRGKMSSYAFFVQTCREEHKK 28
          +GDPKKPRG MS YAFFVQTCREEH++
Sbjct: 7  RGDPKKPRGTMSLYAFFVQTCREEHRR 87


 Score = 53.9 bits (127), Expect(2) = 1e-16
 Identities = 22/34 (64%), Positives = 28/34 (81%)
 Frame = +3

Query: 27  KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           +++HPDASVNFSE SKKCSERWKT   K++G  +
Sbjct: 81  QERHPDASVNFSELSKKCSERWKTCLLKKRGNLK 182


>X80460 M.musculus HMG1-R-135 gene
          Length = 190
          
 Score = 57.8 bits (137), Expect(2) = 6e-16
 Identities = 28/37 (75%), Positives = 29/37 (77%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNF 37
          GK DPKK RGKMSSYAFF+QT    HKKKHPDAS  F
Sbjct: 4  GKKDPKKLRGKMSSYAFFLQTFWV*HKKKHPDASSTF 114


 Score = 48.4 bits (113), Expect(2) = 6e-16
 Identities = 22/28 (78%), Positives = 25/28 (88%)
 Frame = +2

Query: 35  VNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           +  SEFSKKCSER +TM+AKEKGKFEDM
Sbjct: 104 LQLSEFSKKCSER*ETMTAKEKGKFEDM 187


>U22831 Caenorhabditis elegans cosmid F47D12.
           Length = 41275
           
 Score = 82.7 bits (201), Expect = 4e-15
 Identities = 39/71 (54%), Positives = 51/71 (70%), Gaps = 2/71 (2%)
 Frame = +3

Query: 4   DPKKP--RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           D  KP  RGK S Y FFV+ C EEHKKK+P+ +V  +E SKKCSE+WKTM   EK +F +
Sbjct: 36  DMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYE 215

Query: 62  MAKADKARYEREM 74
           +A+ D  RY+ E+
Sbjct: 216 LAQKDAERYQAEV 254


 Score = 42.2 bits (97), Expect = 0.007
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 99  SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
           SAFF +  + RP+I+  HP   +G VA++LG+MW     + K
Sbjct: 608 SAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 733


 Score = 37.1 bits (84), Expect = 0.24
 Identities = 19/58 (32%), Positives = 32/58 (54%)
 Frame = +2

Query: 13  SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARY 70
           S++ F+ Q  R E +  HPD  V   + +++  + WK +  + K  +E  A+ADK RY
Sbjct: 608 SAFFFYSQDKRPEIQAGHPDWKVG--QVAQELGKMWKLVPQETKDMYEQKAQADKDRY 775


>U00049 Caenorhabditis elegans cosmid C18F10.
             Length = 24936
             
 Score = 82.7 bits (201), Expect = 4e-15
 Identities = 39/71 (54%), Positives = 51/71 (70%), Gaps = 2/71 (2%)
 Frame = +3

Query: 4     DPKKP--RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
             D  KP  RGK S Y FFV+ C EEHKKK+P+ +V  +E SKKCSE+WKTM   EK +F +
Sbjct: 24573 DMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYE 24752

Query: 62    MAKADKARYEREM 74
             +A+ D  RY+ E+
Sbjct: 24753 LAQKDAERYQAEV 24791


>X80459 M.musculus HMG1-R-177 gene
          Length = 173
          
 Score = 50.8 bits (119), Expect(2) = 9e-14
 Identities = 25/33 (75%), Positives = 26/33 (78%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDA 33
          GK DPKK RGKMSSYAFF+QT    HKKKH DA
Sbjct: 4  GKKDPKKLRGKMSSYAFFLQTFWV*HKKKHLDA 102


 Score = 48.0 bits (112), Expect(2) = 9e-14
 Identities = 20/22 (90%), Positives = 22/22 (99%)
 Frame = +2

Query: 36  NFSEFSKKCSERWKTMSAKEKG 57
           NFSEFSKKCSERW+TM+AKEKG
Sbjct: 107 NFSEFSKKCSERWETMTAKEKG 172


>S50213 HMG1-related DNA-binding protein [mice, mRNA, 2569 nt].
            Length = 2569
            
 Score = 75.3 bits (182), Expect = 8e-13
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +2

Query: 28   KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
            ++  D +  F   +   S   +  S +E+ K E + +A  A+  +  +     K    KK
Sbjct: 1532 EEEEDVAEEFDSNASASSSSNEGDSDREEKKREQLKRAKMAKDRKSRR-----KSSEAKK 1696

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1697 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 1858


 Score = 61.7 bits (147), Expect = 1e-08
 Identities = 31/92 (33%), Positives = 51/92 (54%)
 Frame = +2

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 1703 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 1876

Query: 64   KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            +  +  YE+ MK Y   +G++ K+ K     K
Sbjct: 1877 EDARREYEKAMKEYEGGRGDSSKRDKSKKKKK 1972


>M26110 Bovine high-mobility-group protein (HMG-1) mRNA, 3' end.
           Length = 791
           
 Score = 74.9 bits (181), Expect = 1e-12
 Identities = 36/51 (70%), Positives = 37/51 (71%)
 Frame = +1

Query: 118 GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           G+SIGDVAKKLGEMWNNTAADDKQP              DIAAYRAKGKPD
Sbjct: 10  GVSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 162


 Score = 34.4 bits (77), Expect = 1.6
 Identities = 14/47 (29%), Positives = 24/47 (50%)
 Frame = +1

Query: 31 PDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 77
          P   V+  + +KK  E W   +A +K  +E  A   K +YE+++  Y
Sbjct: 1  PGGGVSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 141


>L08814 Rat CIIDBP (homologous to human SSRP-1 and mouse T160 genes)
            mRNA,
            Length = 2082
            
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +1

Query: 28   KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
            ++  D +  F   +   S   +  S +E+ K + + +A  A+  +  K     K    KK
Sbjct: 1012 EEEEDVAEEFDSNASASSSSNEGDSDREEKKRKQLKRAKMAKDRKSRK-----KSSEGKK 1176

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1177 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 1338


 Score = 59.3 bits (141), Expect = 5e-08
 Identities = 30/92 (32%), Positives = 49/92 (52%)
 Frame = +1

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++   
Sbjct: 1183 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKG 1356

Query: 64   KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            +  +  YE  MK Y   +G++ K+ K     K
Sbjct: 1357 EDARREYEEAMKEYEGGRGDSSKRDKSKKKKK 1452


>U84139 Bos taurus structure-specific recognition protein 1 (SSRP1)
           mRNA,
           Length = 1834
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +1

Query: 28  KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
           ++  D +  F   +   S   +  S +E+ K + + KA  A+  +  K     K    KK
Sbjct: 709 EEEEDVAEEFDSNASASSSSKEGDSDREEKKRKQLKKAKMAKDRKSRK-----KPLEVKK 873

Query: 88  FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
            KDPNAPKRP SA+ L+ +  R KIK +HPG+S+ D++KK GE+W   + + K+
Sbjct: 874 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISVTDLSKKAGEIWKGMSKEKKE 1035


 Score = 63.2 bits (151), Expect = 3e-09
 Identities = 33/92 (35%), Positives = 51/92 (54%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  MS+Y  ++   RE+ K  HP  SV  ++ SKK  E WK MS ++K +++  A
Sbjct: 880 DPNAPKRPMSAYMLWLNASREKIKSDHPGISV--TDLSKKAGEIWKGMSKEKKEEWDRKA 1053

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
           +  +  YE+ MK Y   +GE+ K+ K     K
Sbjct: 1054EDARREYEKAMKEYEGGRGESSKRDKSKKKKK 1149


>I66608 Sequence 6 from patent US 5670621.
            Length = 2839
            
 Score = 73.0 bits (176), Expect = 4e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +2

Query: 28   KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
            ++  D +  F   +   S   +  S +++ K + + KA  A+  +  K     K    KK
Sbjct: 1730 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 1894

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1895 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 2056


 Score = 62.1 bits (148), Expect = 7e-09
 Identities = 32/92 (34%), Positives = 51/92 (54%)
 Frame = +2

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 1901 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 2074

Query: 64   KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            +  +  YE+ MK Y   +GE+ K+ K     K
Sbjct: 2075 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK 2170


>M86737 Human high mobility group box (SSRP1) mRNA, complete cds.
            Length = 2839
            
 Score = 73.0 bits (176), Expect = 4e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +2

Query: 28   KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
            ++  D +  F   +   S   +  S +++ K + + KA  A+  +  K     K    KK
Sbjct: 1730 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 1894

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1895 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 2056


 Score = 62.1 bits (148), Expect = 7e-09
 Identities = 32/92 (34%), Positives = 51/92 (54%)
 Frame = +2

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 1901 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 2074

Query: 64   KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            +  +  YE+ MK Y   +GE+ K+ K     K
Sbjct: 2075 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK 2170


>I66610 Sequence 9 from patent US 5670621.
            Length = 1444
            
 Score = 73.0 bits (176), Expect = 4e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +1

Query: 28   KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
            ++  D +  F   +   S   +  S +++ K + + KA  A+  +  K     K    KK
Sbjct: 1012 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 1176

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1177 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 1338


 Score = 61.3 bits (146), Expect = 1e-08
 Identities = 31/86 (36%), Positives = 50/86 (58%)
 Frame = +1

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 1183 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 1356

Query: 64   KADKARYEREMKTYIPPKGETKKKFK 89
            +  +  YE+ MK Y   +GE+ K+ K
Sbjct: 1357 EDARRDYEKAMKEYEGGRGESSKRDK 1434


>I66609 Sequence 8 from patent US 5670621.
            Length = 1898
            
 Score = 73.0 bits (176), Expect = 4e-12
 Identities = 40/114 (35%), Positives = 63/114 (55%)
 Frame = +1

Query: 28   KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 87
            ++  D +  F   +   S   +  S +++ K + + KA  A+  +  K     K    KK
Sbjct: 1012 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 1176

Query: 88   FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1177 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKE 1338


 Score = 62.1 bits (148), Expect = 7e-09
 Identities = 32/92 (34%), Positives = 51/92 (54%)
 Frame = +1

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 1183 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 1356

Query: 64   KADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
            +  +  YE+ MK Y   +GE+ K+ K     K
Sbjct: 1357 EDARRDYEKAMKEYEGGRGESSKRDKSKKKKK 1452


>D14315 delta-crystallin enhancer binding protein, partial sequence.
           Length = 1320
           
 Score = 70.2 bits (169), Expect = 3e-11
 Identities = 36/77 (46%), Positives = 52/77 (66%), Gaps = 1/77 (1%)
 Frame = +3

Query: 65  ADKARYEREMKTYIPPKGETK-KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGD 123
           A KA+  ++ K   P K + + KK KDPNAPKRP SA+ L+ +  R KIK +HPG+SI D
Sbjct: 321 AKKAKIVKDRK---PRKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGISITD 491

Query: 124 VAKKLGEMWNNTAADDKQ 141
           ++KK GE+W   + + K+
Sbjct: 492 LSKKAGELWKAMSKEKKE 545


 Score = 59.7 bits (142), Expect = 4e-08
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 390 DPNAPKRPMSAYMLWLNANREKIKSDHPGISI--TDLSKKAGELWKAMSKEKKEEWDRKA 563

Query: 64  KADKARYEREMKTY-IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 118
           +  K  YE+ MK Y +  K E+ K  +     K+          E + K KGE  G
Sbjct: 564 EDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKK---------QEKQMKGKGEKKG 704


>M74017 T.brucei rhodesiense HMG1-like protein mRNA, complete cds.
           Length = 2070
           
 Score = 68.7 bits (165), Expect = 7e-11
 Identities = 47/137 (34%), Positives = 70/137 (50%), Gaps = 8/137 (5%)
 Frame = +1

Query: 5   PKKP----RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
           PKKP    +  +SSY  FV   REE K K+P   +  +   +   + W   S   K  + 
Sbjct: 472 PKKPADYPKPAVSSYLLFVADQREELKAKNP--GMQNTAILQTLGKMWSDASDDVKEHYR 645

Query: 61  DMAKADKARYEREMKTYIPPKGET----KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEH 116
             A+ DKAR+ RE+  Y    G+      K  KD NAPKR  ++F  F S++R K    H
Sbjct: 646 KKAEEDKARFRREVDEYKRQGGKEYGRGGKIKKDSNAPKRAMTSFMFFSSDFRSK----H 813

Query: 117 PGLSIGDVAKKLGEMWNNTAADDKQ 141
             LSI +++K  G  W     ++++
Sbjct: 814 SDLSIVEMSKAAGAAWKELGPEERK 888


 Score = 51.5 bits (121), Expect = 1e-05
 Identities = 27/73 (36%), Positives = 40/73 (53%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K D   P+  M+S+ FF      + + KH D S+   E SK     WK +  +E+  +E+
Sbjct: 739 KKDSNAPKRAMTSFMFF----SSDFRSKHSDLSI--VEMSKAAGAAWKELGPEERKVYEE 900

Query: 62  MAKADKARYEREM 74
           MA+ DK RY+REM
Sbjct: 901 MAEKDKERYKREM 939


 Score = 48.4 bits (113), Expect = 9e-05
 Identities = 31/127 (24%), Positives = 57/127 (44%)
 Frame = +1

Query: 39  EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPP 98
           EF K+     K   A +    +   +A  A  E   KT    K  T+K  K  + PK   
Sbjct: 337 EFKKQLELALKEKDASKSSGGKGSKRARSAGAEAPSKT---KKEMTEKPKKPADYPKPAV 507

Query: 99  SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDI 158
           S++ LF ++ R ++K ++PG+    + + LG+MW++ + D K+               ++
Sbjct: 508 SSYLLFVADQREELKAKNPGMQNTAILQTLGKMWSDASDDVKEHYRKKAEEDKARFRREV 687

Query: 159 AAYRAKG 165
             Y+ +G
Sbjct: 688 DEYKRQG 708


>X97906 V.faba mRNA for transcription factor containing HMG-box
            Length = 2270
            
 Score = 68.3 bits (164), Expect = 1e-10
 Identities = 42/131 (32%), Positives = 66/131 (50%)
 Frame = +2

Query: 32   DASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDP 91
            D+  + S+ S+   E  K   AK++ K +  +KA  ++ + +       K + KKK KDP
Sbjct: 1550 DSGADVSDASQSGGETEKP--AKKEPKKDLSSKASSSKKKSKDADVDGVKKKQKKK-KDP 1720

Query: 92   NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXX 151
            NAPKR  S F  F    R  +K  +PG+S  DV + LGE W N +A++K+P         
Sbjct: 1721 NAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADK 1900

Query: 152  XXXXXDIAAYR 162
                 +I+ Y+
Sbjct: 1901 KRYKDEISGYK 1933


 Score = 63.2 bits (151), Expect = 3e-09
 Identities = 31/80 (38%), Positives = 48/80 (59%)
 Frame = +2

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K DP  P+  +S + FF Q  RE  KK +P   ++F++  +   E+WK +SA+EK  +E 
Sbjct: 1709 KKDPNAPKRALSGFMFFSQMERENLKKTNP--GISFTDVGRVLGEKWKNLSAEEKEPYEA 1882

Query: 62   MAKADKARYEREMKTYIPPK 81
             A+ADK RY+ E+  Y  P+
Sbjct: 1883 KAQADKKRYKDEISGYKNPQ 1942


>M95912 Saccharomyces cerevisiae N-acetyltransferase (MAK) complete
            cds;
            Length = 1780
            
 Score = 68.3 bits (164), Expect = 1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = -1

Query: 74   MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 133
            M T   PK  T +K KDPNAPKR  SA+  F +E R  ++ E+P ++ G V KKLGE W 
Sbjct: 1420 MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWK 1241

Query: 134  NTAADDKQP 142
                ++KQP
Sbjct: 1240 ALTPEEKQP 1214


 Score = 62.8 bits (150), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = -1

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K DP  P+  +S+Y FF    R+  + ++PD  + F +  KK  E+WK ++ +EK  +E 
Sbjct: 1378 KKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEA 1205

Query: 62   MAKADKARYEREMKTY 77
             A+ADK RYE E + Y
Sbjct: 1204 KAQADKKRYESEKELY 1157


>Z71255 S.cerevisiae chromosome XVI 165536 bp sequence, cen rightwards.
              Length = 165536
              
 Score = 68.3 bits (164), Expect = 1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = -3

Query: 74     MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 133
              M T   PK  T +K KDPNAPKR  SA+  F +E R  ++ E+P ++ G V KKLGE W 
Sbjct: 135597 MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWK 135418

Query: 134    NTAADDKQP 142
                  ++KQP
Sbjct: 135417 ALTPEEKQP 135391


 Score = 62.8 bits (150), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = -3

Query: 2      KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
              K DP  P+  +S+Y FF    R+  + ++PD  + F +  KK  E+WK ++ +EK  +E 
Sbjct: 135555 KKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEA 135382

Query: 62     MAKADKARYEREMKTY 77
               A+ADK RYE E + Y
Sbjct: 135381 KAQADKKRYESEKELY 135334


>Z49219;U00094 S.cerevisiae chromosome XVI cosmid 9499.
             Length = 43776
             
 Score = 68.3 bits (164), Expect = 1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = -3

Query: 74    MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 133
             M T   PK  T +K KDPNAPKR  SA+  F +E R  ++ E+P ++ G V KKLGE W 
Sbjct: 13837 MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWK 13658

Query: 134   NTAADDKQP 142
                 ++KQP
Sbjct: 13657 ALTPEEKQP 13631


 Score = 62.8 bits (150), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = -3

Query: 2     KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
             K DP  P+  +S+Y FF    R+  + ++PD  + F +  KK  E+WK ++ +EK  +E 
Sbjct: 13795 KKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEA 13622

Query: 62    MAKADKARYEREMKTY 77
              A+ADK RYE E + Y
Sbjct: 13621 KAQADKKRYESEKELY 13574


>X15317 Yeast NHP6A gene for nonhistone protein
           Length = 591
           
 Score = 68.3 bits (164), Expect = 1e-10
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = +1

Query: 74  MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 133
           M T   PK  T +K KDPNAPKR  SA+  F +E R  ++ E+P ++ G V KKLGE W 
Sbjct: 94  MVTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWK 273

Query: 134 NTAADDKQP 142
               ++KQP
Sbjct: 274 ALTPEEKQP 300


 Score = 62.8 bits (150), Expect = 4e-09
 Identities = 29/76 (38%), Positives = 45/76 (59%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +S+Y FF    R+  + ++PD  + F +  KK  E+WK ++ +EK  +E 
Sbjct: 136 KKDPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEA 309

Query: 62  MAKADKARYEREMKTY 77
            A+ADK RYE E + Y
Sbjct: 310 KAQADKKRYESEKELY 357


>X58282 Maize mRNA for a high mobility group protein
           Length = 885
           
 Score = 67.9 bits (163), Expect = 1e-10
 Identities = 40/110 (36%), Positives = 52/110 (46%), Gaps = 1/110 (0%)
 Frame = +1

Query: 52  SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
           SA +  K +  AKAD     +      P KG   K  KDPN PKR PSAFF+F  E+R +
Sbjct: 34  SAMKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKE 213

Query: 112 IKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAY 161
            K ++P   S+  V K  G+ W + +  DK P               IAAY
Sbjct: 214 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAY 366


 Score = 46.9 bits (109), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 47/88 (52%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+E K+K+P  + + +   K   +RWK++S  +K  +  +A
Sbjct: 148 DPNKPKRAPSAFFVFMEEFRKEFKEKNP-KNKSVAAVGKAAGDRWKSLSESDKAPY--VA 318

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDP 91
           KA+K + E         KGE+    K P
Sbjct: 319 KANKLKLEYNKAIAAYNKGESTAAKKAP 402


>X66077 Z.mays MNB1b mRNA for DNA-binding protein
           Length = 918
           
 Score = 67.9 bits (163), Expect = 1e-10
 Identities = 40/110 (36%), Positives = 52/110 (46%), Gaps = 1/110 (0%)
 Frame = +3

Query: 52  SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
           SA +  K +  AKAD     +      P KG   K  KDPN PKR PSAFF+F  E+R +
Sbjct: 30  SAMKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKE 209

Query: 112 IKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAY 161
            K ++P   S+  V K  G+ W + +  DK P               IAAY
Sbjct: 210 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAY 362


 Score = 46.9 bits (109), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 47/88 (52%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+E K+K+P  + + +   K   +RWK++S  +K  +  +A
Sbjct: 144 DPNKPKRAPSAFFVFMEEFRKEFKEKNP-KNKSVAAVGKAAGDRWKSLSESDKAPY--VA 314

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDP 91
           KA+K + E         KGE+    K P
Sbjct: 315 KANKLKLEYNKAIAAYNKGESTAAKKAP 398


>L08815 Chicken CIIDBP (homologous to human SSRP-1 and mouse T160
            genes)
            Length = 2092
            
 Score = 67.1 bits (161), Expect = 2e-10
 Identities = 29/56 (51%), Positives = 40/56 (70%)
 Frame = +3

Query: 86   KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
            KK KDPN PKRP SA+ L+ +  R KIK +HPG+SI D++KK GE+W   + + K+
Sbjct: 1500 KKGKDPNVPKRPMSAYMLWLNANREKIKSDHPGISITDLSKKAGELWKAMSKEKKE 1667


 Score = 59.3 bits (141), Expect = 5e-08
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
 Frame = +3

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+  MS+Y  ++   RE+ K  HP  S+  ++ SKK  E WK MS ++K +++  A
Sbjct: 1512 DPNVPKRPMSAYMLWLNANREKIKSDHPGISI--TDLSKKAGELWKAMSKEKKEEWDRKA 1685

Query: 64   KADKARYEREMKTY-IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG 118
            +  K  YE+ MK Y +  K E+ K  +     K+          E + K KGE  G
Sbjct: 1686 EDAKRDYEKAMKEYSVGNKSESSKMERSKKKKKK---------QEKQMKGKGEKKG 1826


>X80464 M.musculus HMG1-R-161 gene
          Length = 195
          
 Score = 66.7 bits (160), Expect = 3e-10
 Identities = 33/64 (51%), Positives = 39/64 (60%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
          GK DPKK   +               +++ P    NFSEFSKKCSERW+TM+AKEKGKFE
Sbjct: 4  GKKDPKKAERQNVLICILFANLLGVAQEEAPGCFFNFSEFSKKCSERWETMTAKEKGKFE 183

Query: 61 DMAK 64
          DM K
Sbjct: 184DMGK 195


>U01348 Rattus norvegicus clone B-0/7 arylamine N-acetyltransferase
           mRNA,
           Length = 1385
           
 Score = 66.3 bits (159), Expect = 4e-10
 Identities = 27/32 (84%), Positives = 31/32 (96%)
 Frame = -1

Query: 21  TCREEHKKKHPDASVNFSEFSKKCSERWKTMS 52
           +C+EEHKKKHPD+SVNF+EF KKCSERWKTMS
Sbjct: 134 SCQEEHKKKHPDSSVNFAEFLKKCSERWKTMS 39


 Score = 43.0 bits (99), Expect = 0.004
 Identities = 19/29 (65%), Positives = 21/29 (71%)
 Frame = -3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKK 29
           GKGDP KPRGKMSSYAFFV    +E   +
Sbjct: 186 GKGDPNKPRGKMSSYAFFVPGGAQEEASR 100


>U01343 Rattus norvegicus clone A-1 arylamine N-acetyltransferase
           mRNA,
           Length = 1418
           
 Score = 66.3 bits (159), Expect = 4e-10
 Identities = 27/32 (84%), Positives = 31/32 (96%)
 Frame = -1

Query: 21  TCREEHKKKHPDASVNFSEFSKKCSERWKTMS 52
           +C+EEHKKKHPD+SVNF+EF KKCSERWKTMS
Sbjct: 137 SCQEEHKKKHPDSSVNFAEFLKKCSERWKTMS 42


 Score = 43.0 bits (99), Expect = 0.004
 Identities = 19/29 (65%), Positives = 21/29 (71%)
 Frame = -3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKK 29
           GKGDP KPRGKMSSYAFFV    +E   +
Sbjct: 189 GKGDPNKPRGKMSSYAFFVPGGAQEEASR 103


>AB000637 Canavalia gladiata mRNA for HMG-1, complete cds.
           Length = 736
           
 Score = 66.0 bits (158), Expect = 5e-10
 Identities = 39/101 (38%), Positives = 51/101 (49%), Gaps = 3/101 (2%)
 Frame = +2

Query: 64  KADKARYEREMKTYIPPKG--ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLS 120
           KAD    +  +K      G  ++KK  KDPN PKRPPSAFF+F SE+R + K EHP   S
Sbjct: 32  KADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKS 211

Query: 121 IGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
           +  V K  G+ W + +  +K P               I AY  K
Sbjct: 212 VAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNRK 343


 Score = 49.2 bits (115), Expect = 5e-05
 Identities = 23/74 (31%), Positives = 41/74 (55%)
 Frame = +2

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F+   RE++KK+HP  + + +   K   ++WK++S  EK  F   A
Sbjct: 116 DPNKPKRPPSAFFVFMSEFREQYKKEHP-TNKSVAVVGKAGGDKWKSLSDAEKAPFVARA 292

Query: 64  KADKARYEREMKTY 77
           +  K  Y++ +  Y
Sbjct: 293 EKKKEEYDKSILAY 334


>X15318 Yeast NHPB gene for nonhistone protein
           Length = 900
           
 Score = 64.8 bits (155), Expect = 1e-09
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = +1

Query: 72  REMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEM 131
           +E K    PK  T ++ KDPNAPKR  SA+  F +E R  ++ E+P ++ G V + LGE 
Sbjct: 343 KEAKQPKEPKKRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVTFGQVGRILGER 522

Query: 132 WNNTAADDKQP 142
           W    A++KQP
Sbjct: 523 WKALTAEEKQP 555


 Score = 62.5 bits (149), Expect = 6e-09
 Identities = 30/76 (39%), Positives = 45/76 (58%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +S+Y FF    R+  + ++PD  V F +  +   ERWK ++A+EK  +E 
Sbjct: 391 KKDPNAPKRGLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWKALTAEEKQPYES 564

Query: 62  MAKADKARYEREMKTY 77
            A+ADK RYE E + Y
Sbjct: 565 KAQADKKRYESEKELY 612


>U01345 Rattus norvegicus clone A-3 arylamine N-acetyltransferase
           mRNA,
           Length = 478
           
 Score = 64.8 bits (155), Expect = 1e-09
 Identities = 26/31 (83%), Positives = 30/31 (95%)
 Frame = -2

Query: 21  TCREEHKKKHPDASVNFSEFSKKCSERWKTM 51
           +C+EEHKKKHPD+SVNF+EF KKCSERWKTM
Sbjct: 192 SCQEEHKKKHPDSSVNFAEFLKKCSERWKTM 100


 Score = 43.0 bits (99), Expect = 0.004
 Identities = 19/29 (65%), Positives = 21/29 (71%)
 Frame = -1

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHKKK 29
           GKGDP KPRGKMSSYAFFV    +E   +
Sbjct: 244 GKGDPNKPRGKMSSYAFFVPGGAQEEASR 158


>Z35959;Y13134 S.cerevisiae chromosome II reading frame ORF YBR090c
           Length = 1378
           
 Score = 64.8 bits (155), Expect = 1e-09
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = -3

Query: 72  REMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEM 131
           +E K    PK  T ++ KDPNAPKR  SA+  F +E R  ++ E+P ++ G V + LGE 
Sbjct: 698 KEAKQPKEPKKRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENPDVTFGQVGRILGER 519

Query: 132 WNNTAADDKQP 142
           W    A++KQP
Sbjct: 518 WKALTAEEKQP 486


 Score = 64.0 bits (153), Expect = 2e-09
 Identities = 30/76 (39%), Positives = 46/76 (60%)
 Frame = -3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+ ++S+Y FF    R+  + ++PD  V F +  +   ERWK ++A+EK  +E 
Sbjct: 650 KKDPNAPKRRLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWKALTAEEKQPYES 477

Query: 62  MAKADKARYEREMKTY 77
            A+ADK RYE E + Y
Sbjct: 476 KAQADKKRYESEKELY 429


>Z21703 V.faba mRNA for HMG box.
           Length = 823
           
 Score = 64.0 bits (153), Expect = 2e-09
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = +1

Query: 79  PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAA 137
           P KG   K+ KDPN PKRPPSAFF+F +++R + K +HP   S+  V K  GE W + + 
Sbjct: 205 PAKG---KEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSE 375

Query: 138 DDKQPXXXXXXXXXXXXXXDIAAYRAK--GKPD 168
           ++K P               + AY  K  GK D
Sbjct: 376 EEKAPYVDRALKKKEEYEITLQAYNKKLEGKDD 474


 Score = 56.2 bits (133), Expect = 4e-07
 Identities = 26/74 (35%), Positives = 42/74 (56%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F+   RE++KK HP+ + + +   K C E WK++S +EK  + D A
Sbjct: 229 DPNKPKRPPSAFFVFMADFREQYKKDHPN-NKSVAAVGKACGEEWKSLSEEEKAPYVDRA 405

Query: 64  KADKARYEREMKTY 77
              K  YE  ++ Y
Sbjct: 406 LKKKEEYEITLQAY 447


>L12169 Japanese morning glory high mobility group protein mRNA
           sequence.
           Length = 726
           
 Score = 63.2 bits (151), Expect = 3e-09
 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +3

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQ 141
           +TKK  KDPN PKRPPSAFF+F  ++R   K +HP   S+  V K  G+ W    A +K 
Sbjct: 153 KTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKA 332

Query: 142 PXXXXXXXXXXXXXXDIAAYRAK 164
           P              ++ AY  K
Sbjct: 333 PFISKAEKRKQEYEKNLQAYNKK 401


 Score = 50.8 bits (119), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 43/74 (58%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+ +K+KHP+ + + +   K   ++WK ++A EK  F   A
Sbjct: 174 DPNKPKRPPSAFFVFMEDFRKTYKEKHPN-NKSVAVVGKAGGDKWKQLTAAEKAPFISKA 350

Query: 64  KADKARYEREMKTY 77
           +  K  YE+ ++ Y
Sbjct: 351 EKRKQEYEKNLQAY 392


>Z29356 Gallus domesticus of h71t7 gene encoding G.domesticus
           expressed sequence
           Length = 237
           
 Score = 61.7 bits (147), Expect = 1e-08
 Identities = 26/27 (96%), Positives = 27/27 (99%)
 Frame = +3

Query: 1   GKGDPKKPRGKMSSYAFFVQTCREEHK 27
           GKGDPKKPRGKMSSYAFFVQTCR+EHK
Sbjct: 156 GKGDPKKPRGKMSSYAFFVQTCRQEHK 236


>Z11540 T.aestivum mRNA for high mobility group protein (HMGW)
           Length = 923
           
 Score = 61.7 bits (147), Expect = 1e-08
 Identities = 41/109 (37%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = +2

Query: 53  AKEKGKFEDMAKADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
           AK KG     AKAD     +      P  KG+  K  KDPN PKR PSAFF+F  E+R +
Sbjct: 86  AKSKGA----AKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 253

Query: 112 IKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAY 161
            K ++P   S+  V K  GE W + +  +K P               IAAY
Sbjct: 254 FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAY 406


 Score = 47.6 bits (111), Expect = 2e-04
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +2

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F+   REE K+K+P  + + +   K   ERWK++S  EK  +   A
Sbjct: 188 DPNKPKRAPSAFFVFMGEFREEFKQKNP-KNKSVAAVGKAAGERWKSLSESEKAPYVAKA 364

Query: 64  KADKARYEREMKTYIPPKGET 84
              K  Y + +  Y   KGE+
Sbjct: 365 NKLKGEYNKAIAAY--NKGES 421


>U39747 Ipomoea nil high mobility group protein 2 HMG2 mRNA,
           complete cds.
           Length = 835
           
 Score = 61.7 bits (147), Expect = 1e-08
 Identities = 34/101 (33%), Positives = 50/101 (48%), Gaps = 5/101 (4%)
 Frame = +3

Query: 64  KADKARYEREMKTYIPPKG----ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-G 118
           K  K++ + + K  +  +G    ++KK  KDPN PKRPPSAFF+F  ++R   K +HP  
Sbjct: 144 KGGKSKAKSDNKLAVKKRGCETKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNN 323

Query: 119 LSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
            S+  V K  G+ W      +K P               + AY  K
Sbjct: 324 KSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRK 461


 Score = 49.2 bits (115), Expect = 5e-05
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+ +K+KHP+ + + +   K   ++WK ++  EK  F   A
Sbjct: 234 DPNKPKRPPSAFFVFMEDFRKTYKEKHPN-NKSVAAVGKAGGDKWKQLTDAEKAPFIAKA 410

Query: 64  KADKARYEREMKTY 77
           +  K  YE+ M+ Y
Sbjct: 411 EKRKQEYEKSMQAY 452


>U80736 Homo sapiens CAGF9 mRNA, partial cds.
           Length = 2224
           
 Score = 60.9 bits (145), Expect = 2e-08
 Identities = 29/79 (36%), Positives = 44/79 (54%)
 Frame = +1

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXX 144
           KKK KDPN P++P SA+ LF  + +  IKG++P  + G+V+K +  MW++   + KQ   
Sbjct: 1   KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYK 180

Query: 145 XXXXXXXXXXXXDIAAYRA 163
                        +AAYRA
Sbjct: 181 RKTEAAKKEYLKALAAYRA 237


>AJ002391 Solanum tuberosum mRNA for high mobility group protein
           Length = 734
           
 Score = 60.9 bits (145), Expect = 2e-08
 Identities = 35/101 (34%), Positives = 50/101 (48%), Gaps = 5/101 (4%)
 Frame = +3

Query: 64  KADKARYEREMKTYIPPKGETKKKFK----DPNAPKRPPSAFFLFCSEYRPKIKGEHP-G 118
           K  K++ + + K  +  K    KK K    DPN PKRPPSAFF+F  E+R   K +HP  
Sbjct: 96  KGAKSKAKADTKLGVRKKATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNN 275

Query: 119 LSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
            S+  V K  G+ W   + ++K P              ++ AY  K
Sbjct: 276 KSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKK 413


 Score = 51.5 bits (121), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 44/74 (59%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+ +K+KHP+ + + +   K   ++WK +S +EK  ++  A
Sbjct: 186 DPNKPKRPPSAFFVFMEEFRKTYKEKHPN-NKSVAVVGKAGGDKWKQLSDEEKAPYQAKA 362

Query: 64  KADKARYEREMKTY 77
           +  KA Y++ M  Y
Sbjct: 363 EKRKAEYQKNMDAY 404


>AF002226 Nicotiana tabacum DNA-binding protein (T231) mRNA,
           complete cds.
           Length = 759
           
 Score = 60.9 bits (145), Expect = 2e-08
 Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +2

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQ 141
           + KK  KDPN PKRPPSAFF+F  E+R   K +HP   S+  V K  G+ W   +  +K 
Sbjct: 98  KAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAAVGKAGGDAWKKLSEAEKA 277

Query: 142 PXXXXXXXXXXXXXXDIAAYRAKGKPD 168
           P              ++ AY  K   D
Sbjct: 278 PYQAKAEKRKAEYQKNMDAYNRKQAGD 358


 Score = 50.4 bits (118), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 42/74 (56%)
 Frame = +2

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+ +K+KHP+ + + +   K   + WK +S  EK  ++  A
Sbjct: 119 DPNKPKRPPSAFFVFMEEFRKTYKEKHPN-NKSVAAVGKAGGDAWKKLSEAEKAPYQAKA 295

Query: 64  KADKARYEREMKTY 77
           +  KA Y++ M  Y
Sbjct: 296 EKRKAEYQKNMDAY 337


>Z50799 H.vulgare mRNA for HMG1/2-like protein.
           Length = 974
           
 Score = 60.5 bits (144), Expect = 2e-08
 Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
 Frame = +2

Query: 53  AKEKGKFEDMAKADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
           AK KG     AKAD     +      P  KG+  K  KDPN PKR PSAFF+F  E+R +
Sbjct: 98  AKSKGA----AKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREE 265

Query: 112 IKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAY 161
            K ++P   S+  V K  GE W + +  +K P               IA+Y
Sbjct: 266 FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIASY 418


 Score = 49.6 bits (116), Expect = 4e-05
 Identities = 32/96 (33%), Positives = 48/96 (49%)
 Frame = +2

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F+   REE K+K+P  + + +   K   ERWK++S  EK  F   A
Sbjct: 200 DPNKPKRAPSAFFVFMGEFREEFKQKNP-KNKSVAAVGKAAGERWKSLSESEKAPFVAKA 376

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS 99
              K  Y + + +Y   KGE+        APK+  S
Sbjct: 377 NKLKGEYNKAIASY--NKGESTTA-----APKKASS 463


>L31630 Plasmodium falciparum (clone: D10) high mobility group
           protein,
           Length = 392
           
 Score = 60.1 bits (143), Expect = 3e-08
 Identities = 29/76 (38%), Positives = 39/76 (51%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +S+Y FF +  R E   K P+ S + +   K   E W  +  KEK  FE 
Sbjct: 121 KKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEK 300

Query: 62  MAKADKARYEREMKTY 77
            A+ DK RYE+E   Y
Sbjct: 301 KAQEDKLRYEKEKAEY 348


 Score = 51.5 bits (121), Expect = 1e-05
 Identities = 26/58 (44%), Positives = 34/58 (57%), Gaps = 2/58 (3%)
 Frame = +1

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQP 142
           +KK KDP+APKR  SA+  F  E R +I  + P LS  +  V K +GE WN     +K P
Sbjct: 112 RKKKKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAP 291


>M73753 Saccharomyces cerevisiae mitochondrial protein gene,
           complete CDS.
           Length = 1194
           
 Score = 59.3 bits (141), Expect = 5e-08
 Identities = 36/133 (27%), Positives = 65/133 (48%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  PK+P    S+Y  ++Q  R +  K++P  ++  +E SK   E+W+ + A  K K+  
Sbjct: 344 KQGPKRPT---SAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYIS 508

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             K   + Y++            KK+F +   PK+P   F  + +E R ++  +HP  S 
Sbjct: 509 ERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQ 655

Query: 122 GDVAKKLGEMWNN 134
            D+ K +G+ W +
Sbjct: 656 LDLMKIIGDKWQS 694


 Score = 46.5 bits (108), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 30/48 (61%)
 Frame = +2

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           PKRP SA+FL+  ++R +   E+P L   +++K  GE W N  AD K+
Sbjct: 353 PKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKE 496


>Z48952;Z71257 S.cerevisiae chromosome XIII cosmid 9916.
             Length = 22131
             
 Score = 59.3 bits (141), Expect = 5e-08
 Identities = 36/133 (27%), Positives = 65/133 (48%)
 Frame = +3

Query: 2     KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
             K  PK+P    S+Y  ++Q  R +  K++P  ++  +E SK   E+W+ + A  K K+  
Sbjct: 15762 KQGPKRPT---SAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYIS 15926

Query: 62    MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
               K   + Y++            KK+F +   PK+P   F  + +E R ++  +HP  S 
Sbjct: 15927 ERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQ 16073

Query: 122   GDVAKKLGEMWNN 134
              D+ K +G+ W +
Sbjct: 16074 LDLMKIIGDKWQS 16112


 Score = 46.5 bits (108), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 30/48 (61%)
 Frame = +3

Query: 94    PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             PKRP SA+FL+  ++R +   E+P L   +++K  GE W N  AD K+
Sbjct: 15771 PKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKE 15914


>Y08298 Z.mays mRNA for HMGc2 protein
           Length = 828
           
 Score = 59.3 bits (141), Expect = 5e-08
 Identities = 27/58 (46%), Positives = 38/58 (64%), Gaps = 1/58 (1%)
 Frame = +1

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQP 142
           +KK      PKRPPSAFF+F SE+R + + +HPG  S+  V+K  GE W + +  +KQP
Sbjct: 73  RKKAAASGKPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQP 249


 Score = 46.5 bits (108), Expect = 4e-04
 Identities = 27/93 (29%), Positives = 45/93 (48%)
 Frame = +1

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+P    S++  F+   R+E++ +HP  + + +  SK   E+W++MS +EK  + D 
Sbjct: 94  GKPKRPP---SAFFVFMSEFRQEYQAQHP-GNKSVAAVSKAAGEKWRSMSEQEKQPYVDQ 261

Query: 63  AKADKARYEREMKTYIPPKGETKKKFKDPNAPK 95
           A   K  YE+            K K  D +  K
Sbjct: 262 AGQKKQDYEKTKANIEKSTSSKKAKTDDDDGSK 360


>AJ223169 Saccharomyces cerevisiae mRNA for cisplatin-damaged DNA
           recognition
           Length = 1087
           
 Score = 59.3 bits (141), Expect = 5e-08
 Identities = 36/133 (27%), Positives = 65/133 (48%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K  PK+P    S+Y  ++Q  R +  K++P  ++  +E SK   E+W+ + A  K K+  
Sbjct: 646 KQGPKRPT---SAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKYIS 810

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
             K   + Y++            KK+F +   PK+P   F  + +E R ++  +HP  S 
Sbjct: 811 ERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQ 957

Query: 122 GDVAKKLGEMWNN 134
            D+ K +G+ W +
Sbjct: 958 LDLMKIIGDKWQS 996


 Score = 46.5 bits (108), Expect = 4e-04
 Identities = 20/48 (41%), Positives = 30/48 (61%)
 Frame = +1

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           PKRP SA+FL+  ++R +   E+P L   +++K  GE W N  AD K+
Sbjct: 655 PKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKE 798


>Y14072 Arabidopsis thaliana mRNA for HMG beta1 protein
           Length = 686
           
 Score = 58.9 bits (140), Expect = 6e-08
 Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
 Frame = +1

Query: 60  EDMAKADKARYE-REMKTYIPPK-----GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 113
           E + K  K++ E R  K  +  K     G  K   KDPN PKRP SAFF+F  ++R   K
Sbjct: 25  ESIMKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFK 204

Query: 114 GEHP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
            E+P   S+  V K  G+ W + +  +K P              +I AY  K
Sbjct: 205 KENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 360


 Score = 49.6 bits (116), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 41/74 (55%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  RE  KK++P  + + +   K   ++WK++S  EK  +   A
Sbjct: 133 DPNKPKRPASAFFVFMEDFRETFKKENPK-NKSVATVGKAAGDKWKSLSDSEKAPYVAKA 309

Query: 64  KADKARYEREMKTY 77
           +  K  YE+ +K Y
Sbjct: 310 EKRKVEYEKNIKAY 351


>Y14073 Arabidopsis thaliana mRNA for HMG beta2 protein
           Length = 731
           
 Score = 58.9 bits (140), Expect = 6e-08
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
 Frame = +3

Query: 60  EDMAKADKARYE-REMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGE 115
           E + K  K++ E R  K  +   P KG  K   KDPN PKRP SAFF+F  ++R   K E
Sbjct: 42  ESIMKGAKSKAETRSTKLSVTKKPAKG-AKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 218

Query: 116 HP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
           HP   S+  V K  GE W + +  +K P              ++ AY  K
Sbjct: 219 HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 368


 Score = 50.0 bits (117), Expect = 3e-05
 Identities = 24/74 (32%), Positives = 40/74 (53%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R  +K++HP  + + +   K   E+WK++S  EK  +   A
Sbjct: 141 DPNKPKRPSSAFFVFMEDFRVTYKEEHPK-NKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 317

Query: 64  KADKARYEREMKTY 77
              K  YE+ MK Y
Sbjct: 318 DKRKVEYEKNMKAY 359


>Y09482 A.thaliana mRNA for HMG 1 protein
           Length = 738
           
 Score = 58.9 bits (140), Expect = 6e-08
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
 Frame = +1

Query: 60  EDMAKADKARYE-REMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGE 115
           E + K  K++ E R  K  +   P KG  K   KDPN PKRP SAFF+F  ++R   K E
Sbjct: 40  ESIMKGAKSKAETRSTKLSVTKKPAKG-AKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 216

Query: 116 HP-GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
           HP   S+  V K  GE W + +  +K P              ++ AY  K
Sbjct: 217 HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 366


 Score = 50.0 bits (117), Expect = 3e-05
 Identities = 24/74 (32%), Positives = 40/74 (53%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R  +K++HP  + + +   K   E+WK++S  EK  +   A
Sbjct: 139 DPNKPKRPSSAFFVFMEDFRVTYKEEHPK-NKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 315

Query: 64  KADKARYEREMKTY 77
              K  YE+ MK Y
Sbjct: 316 DKRKVEYEKNMKAY 357


>Y14071 Arabidopsis thaliana mRNA for HMG alpha protein
           Length = 846
           
 Score = 58.2 bits (138), Expect = 1e-07
 Identities = 35/94 (37%), Positives = 49/94 (51%), Gaps = 1/94 (1%)
 Frame = +1

Query: 49  KTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEY 108
           K  + KE  K  D  K  K +   E  T    + E K K KDPN PKR PSAFF+F  ++
Sbjct: 79  KVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAK-KDPNKPKRAPSAFFVFLEDF 255

Query: 109 RPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQP 142
           R   K E+P + ++  V K  G+ W + +  +K P
Sbjct: 256 RVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAP 360


 Score = 54.7 bits (129), Expect = 1e-06
 Identities = 27/76 (35%), Positives = 42/76 (54%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP KP+   S++  F++  R   KK++P+     S   K   ++WK+MS  EK  +E+
Sbjct: 193 KKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKA-VSAVGKAGGQKWKSMSQAEKAPYEE 369

Query: 62  MAKADKARYEREMKTY 77
            A   KA YE++M  Y
Sbjct: 370 KAAKRKAEYEKQMDAY 417


>Y08807 Z.mays mRNA for HMG protein
           Length = 731
           
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +1

Query: 86  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPXX 144
           K  KDPN PKRPPSAFF+F  E+R   K +HP +  +  + K  G+ W + +  +K P  
Sbjct: 97  KAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAPYV 276

Query: 145 XXXXXXXXXXXXDIAAYRAKGKPD 168
                        I AY  K   D
Sbjct: 277 SKAEKLKAEYTKKIDAYNNKQSGD 348


 Score = 51.2 bits (120), Expect = 1e-05
 Identities = 27/90 (30%), Positives = 47/90 (52%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R+++K+KHP+     S   K   ++WK++S  EK  +   A
Sbjct: 109 DPNKPKRPPSAFFVFMEEFRKDYKEKHPNVK-QVSVIGKAGGDKWKSLSDAEKAPYVSKA 285

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNA 93
           +  KA Y +++  Y        K+  DP A
Sbjct: 286 EKLKAEYTKKIDAY------NNKQSGDPTA 357


>X80463 M.musculus HMG1-R-159 gene
           Length = 192
           
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 25/36 (69%), Positives = 30/36 (82%)
 Frame = +3

Query: 27  KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           +++ P    NFSEFS KCSERW+TM+AKEKGKFEDM
Sbjct: 81  QEEAPGCFFNFSEFSMKCSERWETMTAKEKGKFEDM 188


 Score = 53.9 bits (127), Expect = 2e-06
 Identities = 27/37 (72%), Positives = 28/37 (74%)
 Frame = +1

Query: 1  GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNF 37
          GK DPKK RGKMSSYAFF+QT    HKKKH DAS  F
Sbjct: 4  GKKDPKKLRGKMSSYAFFLQTFWV*HKKKHLDASSTF 114


>I66612 Sequence 12 from patent US 5670621.
            Length = 3292
            
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 37/131 (28%), Positives = 59/131 (44%)
 Frame = +1

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K  PK+P    S+Y  F  + R E  ++ P+A V   E SK  S RWK ++  +K  F +
Sbjct: 907  KQGPKRPS---SAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYE 1071

Query: 62   MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
              + +  +Y              +  ++    PKRP   F  F  E RP +  E+P   +
Sbjct: 1072 EFRTNWEKYR-----------VVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGL 1218

Query: 122  GDVAKKLGEMW 132
             ++ K +GE W
Sbjct: 1219 IEITKIIGERW 1251


 Score = 39.5 bits (90), Expect = 0.047
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = +1

Query: 83  ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           E +K+ K    PKRP SA+FLF    R ++  + P   + +++K     W     D K+P
Sbjct: 886 ERRKQLKK-QGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKP 1062


>I66611 Sequence 10 from patent US 5670621.
            Length = 2384
            
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 9/88 (10%)
 Frame = +3

Query: 54   KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 113
            K++ K E   K +K   E+E       K  +KKK KD   PKR  +AF L+ ++ R  IK
Sbjct: 1683 KKEKKSEKKEKKEKKHKEKERT-----KKPSKKK-KDSGKPKRATTAFMLWLNDTRESIK 1844

Query: 114  GEHPGLSIGDVAKKLGEM---------WNNTAADDKQ 141
             E+PG+ + ++AKK GEM         W + AA DKQ
Sbjct: 1845 RENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQ 1955


>X68408 D.melanogaster SSRP1 mRNA
            Length = 2384
            
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 9/88 (10%)
 Frame = +3

Query: 54   KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 113
            K++ K E   K +K   E+E       K  +KKK KD   PKR  +AF L+ ++ R  IK
Sbjct: 1683 KKEKKSEKKEKKEKKHKEKERT-----KKPSKKK-KDSGKPKRATTAFMLWLNDTRESIK 1844

Query: 114  GEHPGLSIGDVAKKLGEM---------WNNTAADDKQ 141
             E+PG+ + ++AKK GEM         W + AA DKQ
Sbjct: 1845 RENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQ 1955


>Z28032;Y13137 S.cerevisiae chromosome XI reading frame ORF YKL032c
            Length = 3499
            
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 37/131 (28%), Positives = 59/131 (44%)
 Frame = -1

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K  PK+P    S+Y  F  + R E  ++ P+A V   E SK  S RWK ++  +K  F +
Sbjct: 2215 KQGPKRPS---SAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYE 2051

Query: 62   MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
              + +  +Y              +  ++    PKRP   F  F  E RP +  E+P   +
Sbjct: 2050 EFRTNWEKYR-----------VVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGL 1904

Query: 122  GDVAKKLGEMW 132
             ++ K +GE W
Sbjct: 1903 IEITKIIGERW 1871


 Score = 39.5 bits (90), Expect = 0.047
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = -1

Query: 83   ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            E +K+ K    PKRP SA+FLF    R ++  + P   + +++K     W     D K+P
Sbjct: 2236 ERRKQLKK-QGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKP 2060


>L16900 Yeast intrastrand crosslink recognition protein (Ixr1) gene,
            Length = 3036
            
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 37/131 (28%), Positives = 59/131 (44%)
 Frame = +3

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K  PK+P    S+Y  F  + R E  ++ P+A V   E SK  S RWK ++  +K  F +
Sbjct: 2037 KQGPKRPS---SAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYE 2201

Query: 62   MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
              + +  +Y              +  ++    PKRP   F  F  E RP +  E+P   +
Sbjct: 2202 EFRTNWEKYR-----------VVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGL 2348

Query: 122  GDVAKKLGEMW 132
             ++ K +GE W
Sbjct: 2349 IEITKIIGERW 2381


 Score = 39.5 bits (90), Expect = 0.047
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = +3

Query: 83   ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            E +K+ K    PKRP SA+FLF    R ++  + P   + +++K     W     D K+P
Sbjct: 2016 ERRKQLKK-QGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKP 2192


>X71622 S.cerevisiae DNA sequence for Kazal serine protease inhibitor
            signature
            Length = 11719
            
 Score = 57.8 bits (137), Expect = 1e-07
 Identities = 37/131 (28%), Positives = 59/131 (44%)
 Frame = -1

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K  PK+P    S+Y  F  + R E  ++ P+A V   E SK  S RWK ++  +K  F +
Sbjct: 9469 KQGPKRPS---SAYFLFSMSIRNELLQQFPEAKV--PELSKLASARWKELTDDQKKPFYE 9305

Query: 62   MAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 121
              + +  +Y              +  ++    PKRP   F  F  E RP +  E+P   +
Sbjct: 9304 EFRTNWEKYR-----------VVRDAYEKTLPPKRPSGPFIQFTQEIRPTVVKENPDKGL 9158

Query: 122  GDVAKKLGEMW 132
             ++ K +GE W
Sbjct: 9157 IEITKIIGERW 9125


 Score = 39.5 bits (90), Expect = 0.047
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = -1

Query: 83   ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            E +K+ K    PKRP SA+FLF    R ++  + P   + +++K     W     D K+P
Sbjct: 9490 ERRKQLKK-QGPKRPSSAYFLFSMSIRNELLQQFPEAKVPELSKLASARWKELTDDQKKP 9314


>Y14074 Arabidopsis thaliana mRNA for HMG gamma protein
           Length = 701
           
 Score = 57.4 bits (136), Expect = 2e-07
 Identities = 33/102 (32%), Positives = 47/102 (45%), Gaps = 1/102 (0%)
 Frame = +1

Query: 63  AKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSI 121
           +KA     ++ +KT     G  KK  KDPN PKRPPSAFF+F  ++R +    +P   S+
Sbjct: 19  SKAGATSTDQRLKTRGRKAG--KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSV 192

Query: 122 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAK 164
             V K  G  W +   +DK P              ++  Y  K
Sbjct: 193 ATVGKAAGARWKSMTDEDKAPYVAKAESRKTEYIKNVQQYNLK 321


>X78993 S.cerevisiae genomic DNA 70kb region of the right arm of
            chromosome II.
            Length = 69748
            
 Score = 56.6 bits (134), Expect = 3e-07
 Identities = 27/71 (38%), Positives = 43/71 (60%)
 Frame = -3

Query: 7    KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 66
            +P  ++S+Y FF    R+  + ++PD  V F +  +   ERWK ++A+EK  +E  A+AD
Sbjct: 6641 RP*ERLSAYMFFANENRDIVRSENPD--VTFGQVGRILGERWKALTAEEKQPYESKAQAD 6468

Query: 67   KARYEREMKTY 77
            K RYE E + Y
Sbjct: 6467 KKRYESEKELY 6435


 Score = 42.6 bits (98), Expect = 0.005
 Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 3/62 (4%)
 Frame = -3

Query: 81   KGETKKKFKDPNAPKRP---PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 137
            KG  ++  ++     RP    SA+  F +E R  ++ E+P ++ G V + LGE W    A
Sbjct: 6686 KGTKEEDHQEKEGS*RP*ERLSAYMFFANENRDIVRSENPDVTFGQVGRILGERWKALTA 6507

Query: 138  DDKQP 142
            ++KQP
Sbjct: 6506 EEKQP 6492


>Y08297 Z.mays mRNA for HMGc1 protein
           Length = 784
           
 Score = 56.2 bits (133), Expect = 4e-07
 Identities = 27/58 (46%), Positives = 36/58 (61%), Gaps = 1/58 (1%)
 Frame = +2

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPG-LSIGDVAKKLGEMWNNTAADDKQP 142
           +KK      PKRPPSAFF+F SE+R + +  HPG  S+  V+K  GE W   +  +KQP
Sbjct: 158 RKKAAASGKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMSDQEKQP 334


 Score = 46.1 bits (107), Expect = 5e-04
 Identities = 26/87 (29%), Positives = 44/87 (49%)
 Frame = +2

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+P    S++  F+   R+E++  HP  + + +  SK   E+W+ MS +EK  + D 
Sbjct: 179 GKPKRPP---SAFFVFMSEFRQEYQALHP-GNKSVATVSKAAGEKWRAMSDQEKQPYVDQ 346

Query: 63  AKADKARYEREMKTYIPPKGETKKKFK 89
           A   K  YE+    +   +  + KK K
Sbjct: 347 AGQKKQDYEKTKANFDKKESTSSKKAK 427


>D13491 A.thaliana mRNA for high mobility group protein, complete cds.
            Length = 2114
            
 Score = 56.2 bits (133), Expect = 4e-07
 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 14/78 (17%)
 Frame = +2

Query: 53   AKEKGKFEDMAKADKARYEREMKTY--IPPKGET------------KKKFKDPNAPKRPP 98
            A E G  E   K+ K   ++E  +   +PPK +T             KK KDPNAPKR  
Sbjct: 1568 ASEGGVGEIKEKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPNAPKRAM 1747

Query: 99   SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGE 130
            S F  F    R  IK EHPG++ G+V K LG+
Sbjct: 1748 SGFMFFSQMERDNIKKEHPGIAFGEVGKVLGD 1843


 Score = 44.1 bits (102), Expect = 0.002
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = +2

Query: 2    KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
            K DP  P+  MS + FF Q  R+  KK+HP   + F E  K   ++        K   + 
Sbjct: 1715 KKDPNAPKRAMSGFMFFSQMERDNIKKEHP--GIAFGEVGKVLGDKCVKCLLMIKSHMKP 1888

Query: 62   MAKADKARYEREMKTYIPPK 81
              + DK RY+ E+  Y  P+
Sbjct: 1889 RLQVDKQRYKDEISDYKNPQ 1948


>X58245 Soybean mRNA for HMG-1 like protein
           Length = 761
           
 Score = 56.2 bits (133), Expect = 4e-07
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 86  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPXX 144
           K  KDPN PKRPPSAFF+F  E+R     EHP   ++  V K  G  W   +  +K P  
Sbjct: 142 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYV 321

Query: 145 XXXXXXXXXXXXDIAAYRAK 164
                       ++ AY  K
Sbjct: 322 AKSEKRKVEYEKNMRAYNKK 381


 Score = 51.2 bits (120), Expect = 1e-05
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
 Frame = +1

Query: 1   GKG----DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 56
           GKG    DP KP+   S++  F++  R+   K+HP+     S   K    +WKTMS  EK
Sbjct: 133 GKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKA-VSAVGKAAGAKWKTMSDAEK 309

Query: 57  GKFEDMAKADKARYEREMKTYIPPKGE 83
             +   ++  K  YE+ M+ Y   + E
Sbjct: 310 APYVAKSEKRKVEYEKNMRAYNKKQAE 390


>L08825 Drosophila melanogaster single-stranded recognition protein
            (SSRP)
            Length = 2443
            
 Score = 55.8 bits (132), Expect = 6e-07
 Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
 Frame = +1

Query: 54   KEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK 113
            K++ K E   K +K   E+E       K  +KKK KD   PKR  +AF L+ ++ R   K
Sbjct: 1666 KKEKKSEKKEKKEKKHKEKERT-----KKPSKKK-KDSGKPKRATTAFMLWLNDTRESYK 1827

Query: 114  GEHPGLSIGDVAKKLGEM---------WNNTAADDKQ 141
             E+PG+ + ++AKK GEM         W + AA DKQ
Sbjct: 1828 RENPGIKVTEIAKKGGEMWKELKDKSKWEDAAAKDKQ 1938


>L22300 Chilo iridescent virus type 6 zinc finger protein and
            non-histone
            Length = 5702
            
 Score = 55.4 bits (131), Expect = 7e-07
 Identities = 39/134 (29%), Positives = 60/134 (44%)
 Frame = +3

Query: 8    PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 67
            P+   SSY FF Q  R     + PD   N  +      ++W  +  +++ K++ MA  D+
Sbjct: 927  PKRNKSSYLFFCQEIRPSIVAEMPDIKPN--QVMVHLGKKWSELPLEDRKKYDVMAVEDR 1100

Query: 68   ARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKK 127
             RY            E  KK   P       S +  FC++ R KIK + P L+  D+  K
Sbjct: 1101 KRYLASK--------EANKKLNKPVKI----SGYLQFCADER-KIKLKFPDLTTKDITAK 1241

Query: 128  LGEMWNNTAADDKQ 141
            LG MWN+   ++ Q
Sbjct: 1242 LGGMWNDYKKNNPQ 1283


 Score = 43.0 bits (99), Expect = 0.004
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 92  NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           N PKR  S++  FC E RP I  E P +    V   LG+ W+    +D++
Sbjct: 921 NVPKRNKSSYLFFCQEIRPSIVAEMPDIKPNQVMVHLGKKWSELPLEDRK 1070


>M81360 Babesia bovis non-histone protein mRNA, complete cds.
           Length = 401
           
 Score = 55.0 bits (130), Expect = 1e-06
 Identities = 27/80 (33%), Positives = 41/80 (50%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +SSY FF +  R E   ++P+ + + +   K     W  +S +EK  +E 
Sbjct: 117 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYER 296

Query: 62  MAKADKARYEREMKTYIPPK 81
           M+  D+ RYERE   Y   K
Sbjct: 297 MSDEDRVRYEREKAEYAQRK 356


 Score = 47.6 bits (111), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 36/58 (61%), Gaps = 2/58 (3%)
 Frame = +3

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQP 142
           +K  KDPNAPKR  S++  F  E R +I  E+P ++  +  + K +G  WN  + ++K+P
Sbjct: 108 RKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKP 287


>AF000195 Caenorhabditis elegans cosmid C32F10.
             Length = 30102
             
 Score = 54.3 bits (128), Expect = 2e-06
 Identities = 34/93 (36%), Positives = 52/93 (55%)
 Frame = -1

Query: 49    KTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEY 108
             + +  K+K   E   K +K   E+ +K     KG   KK KDPN PKR  +A+ ++ +  
Sbjct: 12192 ENIEPKKKESKEKKNKREKK--EKPVKEKAVKKG---KKTKDPNEPKRATTAYIIWFNAN 12028

Query: 109   RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             R  +K +  G ++GDVAKK G  W + +ADDK+
Sbjct: 12027 RNSMKED--GDTLGDVAKKAGAKWKSMSADDKK 11935


>X53461;X53260 Human mRNA for upstream binding factor (hUBF)
            Length = 3097
            
 Score = 53.9 bits (127), Expect = 2e-06
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +1

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 1129 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 1308

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 1309 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 1488

Query: 135  TAADDK 140
             +   K
Sbjct: 1489 LSEKKK 1506


 Score = 53.1 bits (125), Expect = 4e-06
 Identities = 39/140 (27%), Positives = 68/140 (47%), Gaps = 3/140 (2%)
 Frame = +1

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1345 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 1518

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 1519 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 1659

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1660 KNDRVKALKAMEMTWNNMEKKEK 1728


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +1

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1702 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 1881

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1882 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1986


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 319 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 480

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 481 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 597


 Score = 35.6 bits (80), Expect = 0.69
 Identities = 27/91 (29%), Positives = 46/91 (49%), Gaps = 18/91 (19%)
 Frame = +1

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
           ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 778 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 951

Query: 81  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                          K E + K K    P K PP+++ L+C+E    +K
Sbjct: 952 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 1098


>X53390 Human mRNA for upstream binding factor (hUBF)
            Length = 3097
            
 Score = 53.9 bits (127), Expect = 2e-06
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +1

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 1129 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 1308

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 1309 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 1488

Query: 135  TAADDK 140
             +   K
Sbjct: 1489 LSEKKK 1506


 Score = 53.1 bits (125), Expect = 4e-06
 Identities = 39/140 (27%), Positives = 68/140 (47%), Gaps = 3/140 (2%)
 Frame = +1

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1345 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 1518

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 1519 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 1659

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1660 KNDRVKALKAMEMTWNNMEKKEK 1728


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +1

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1702 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 1881

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1882 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1986


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 319 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 480

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 481 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 597


 Score = 35.6 bits (80), Expect = 0.69
 Identities = 27/91 (29%), Positives = 46/91 (49%), Gaps = 18/91 (19%)
 Frame = +1

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
           ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 778 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 951

Query: 81  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                          K E + K K    P K PP+++ L+C+E    +K
Sbjct: 952 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 1098


>M61725 Rat transcription factor UBF2 mRNA.
            Length = 2452
            
 Score = 53.9 bits (127), Expect = 2e-06
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +3

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 1137 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 1316

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 1317 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 1496

Query: 135  TAADDK 140
             +   K
Sbjct: 1497 LSEKKK 1514


 Score = 52.3 bits (123), Expect = 6e-06
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
 Frame = +3

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1353 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 1526

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER+      P GE + + K P +PKR           ++  + G++    
Sbjct: 1527 AREAALKAQSERK------PGGEREDRGKLPESPKRAEEI-------WQQSVIGDYLARF 1667

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1668 KNDRVKALKAMEMTWNNMEKKEK 1736


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +3

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1710 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 1889

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1890 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1994


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 438 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 599

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 600 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 716


>M61726 Rat transcription factor UBF1 mRNA.
            Length = 2563
            
 Score = 53.9 bits (127), Expect = 2e-06
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +3

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 1248 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 1427

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 1428 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 1607

Query: 135  TAADDK 140
             +   K
Sbjct: 1608 LSEKKK 1625


 Score = 52.3 bits (123), Expect = 6e-06
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
 Frame = +3

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1464 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 1637

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER+      P GE + + K P +PKR           ++  + G++    
Sbjct: 1638 AREAALKAQSERK------PGGEREDRGKLPESPKRAEEI-------WQQSVIGDYLARF 1778

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1779 KNDRVKALKAMEMTWNNMEKKEK 1847


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +3

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1821 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 2000

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 2001 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 2105


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 438 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 599

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 600 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 716


 Score = 35.6 bits (80), Expect = 0.69
 Identities = 27/91 (29%), Positives = 46/91 (49%), Gaps = 18/91 (19%)
 Frame = +3

Query: 23   REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
            ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 897  KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 1070

Query: 81   ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                           K E + K K    P K PP+++ L+C+E    +K
Sbjct: 1071 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 1217


>X56687 H.sapiens mRNA for autoantigen NOR-90
            Length = 2489
            
 Score = 53.9 bits (127), Expect = 2e-06
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +3

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 1050 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQA 1229

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 1230 TSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 1409

Query: 135  TAADDK 140
             +   K
Sbjct: 1410 LSEKKK 1427


 Score = 53.1 bits (125), Expect = 4e-06
 Identities = 39/140 (27%), Positives = 68/140 (47%), Gaps = 3/140 (2%)
 Frame = +3

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1266 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 1439

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER+      P GE +++ K P +PKR           ++  + G++    
Sbjct: 1440 AREAALKAQSERK------PGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 1580

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1581 KNDRVKALKAMEMTWNNMEKKEK 1649


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +3

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1623 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 1802

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1803 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1907


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 351 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 512

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 513 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 629


>X60831 Mouse ubf gene for transcription factor UBF
            Length = 3031
            
 Score = 53.5 bits (126), Expect = 3e-06
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 29/97 (29%)
 Frame = +3

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 1032 CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 1211

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ E P LS  ++ + L  MWN+
Sbjct: 1212 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWND 1391

Query: 135  TAADDK 140
                 K
Sbjct: 1392 LTEKKK 1409


 Score = 51.2 bits (120), Expect = 1e-05
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
 Frame = +3

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  ++ K+K K++
Sbjct: 1248 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLTEKKKAKYK 1421

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER+      P GE + + K P +PKR           ++  + G++    
Sbjct: 1422 AREAALKAQSERK------PGGEREDRGKLPESPKRAEEI-------WQQSVIGDYLARF 1562

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1563 KNDRVKALKAMEMTWNNMEKKEK 1631


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +3

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1605 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKF 1784

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1785 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1889


 Score = 37.9 bits (86), Expect = 0.14
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +3

Query: 35  VNFSEFS-KKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +FS   C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 222 VAFKDFSGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 383

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +F F  E R K    HP +S  D+ K L + +
Sbjct: 384 PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 500


 Score = 34.4 bits (77), Expect = 1.6
 Identities = 27/91 (29%), Positives = 45/91 (48%), Gaps = 18/91 (19%)
 Frame = +3

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
           ++ + K  PDA+    E      ++W  +S K+  K+   A   +  YE  M+ YI    
Sbjct: 681 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKTLKWIHKALEQRKEYEEIMRDYIQKHP 854

Query: 81  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                          K E + K K    P K PP+++ L+C+E    +K
Sbjct: 855 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 1001


>X76774 P.sativum mRNA for HMG1 protein
           Length = 807
           
 Score = 53.1 bits (125), Expect = 4e-06
 Identities = 29/86 (33%), Positives = 40/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 79  PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI-KGEHPGLSIGDVAKKLGEMWNNTAA 137
           P KG   K+ KDPN PKRPPSAFF+F  ++R +  KG     ++  V K  G  W +   
Sbjct: 117 PAKG---KEPKDPNKPKRPPSAFFVFMEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTE 287

Query: 138 DDKQPXXXXXXXXXXXXXXDIAAYRAK 164
            +K P               + +Y  K
Sbjct: 288 AEKAPYAAKAEKRKAEYEKSMKSYNKK 368


 Score = 50.8 bits (119), Expect = 2e-05
 Identities = 26/80 (32%), Positives = 42/80 (52%)
 Frame = +3

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP KP+   S++  F++  R++ KK + D     S   K    +WK+M+  EK  +   A
Sbjct: 141 DPNKPKRPPSAFFVFMEDFRKQFKKGNADNKA-VSAVGKAAGAKWKSMTEAEKAPYAAKA 317

Query: 64  KADKARYEREMKTYIPPKGE 83
           +  KA YE+ MK+Y   + E
Sbjct: 318 EKRKAEYEKSMKSYNKKQAE 377


>L42570 Cricetulus griseus ribosomal transcription factor (UBF1) mRNA,
            Length = 2416
            
 Score = 52.7 bits (124), Expect = 5e-06
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +1

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 988  CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 1167

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ + P LS  ++ + L  MWN+
Sbjct: 1168 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEQRPELSESELTRLLARMWND 1347

Query: 135  TAADDK 140
             +   K
Sbjct: 1348 LSEKKK 1365


 Score = 51.9 bits (122), Expect = 8e-06
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
 Frame = +1

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1204 GKGGSEKPKRPVSAMFIFSEEKRRQLQEQRPELSE--SELTRLLARMWNDLSEKKKAKYK 1377

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER       P GE +++ K P +PKR           ++  + G++    
Sbjct: 1378 AREAALKAQSER------MPGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 1518

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1519 KNDRVKALKAMEMTWNNMEKKEK 1587


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +1

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1561 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGMPKKPPMNGYQKF 1740

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1741 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1845


 Score = 35.6 bits (80), Expect = 0.69
 Identities = 27/91 (29%), Positives = 46/91 (49%), Gaps = 18/91 (19%)
 Frame = +1

Query: 23  REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-- 80
           ++ + K  PDA+    E      ++W  +S K++ K+   A   +  YE  M+ YI    
Sbjct: 637 KKVYLKVRPDATTK--EVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHP 810

Query: 81  ---------------KGETKKKFKDPNAP-KRPPSAFFLFCSEYRPKIK 113
                          K E + K K    P K PP+++ L+C+E    +K
Sbjct: 811 ELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAELMANMK 957


 Score = 34.0 bits (76), Expect = 2.0
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +1

Query: 35  VNFSEF-SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +F    C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 178 VAFKDFLGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 339

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +  F  E R K    HP +S  D+ K L + +
Sbjct: 340 PKKPLTPYLRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 456


>Y14075 Arabidopsis thaliana mRNA for HMG delta protein
           Length = 539
           
 Score = 52.7 bits (124), Expect = 5e-06
 Identities = 22/57 (38%), Positives = 35/57 (60%), Gaps = 1/57 (1%)
 Frame = +1

Query: 86  KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQP 142
           KK KDPN PK+PPS FF+F  ++R +    +P   S+G+V +  G+ W     +++ P
Sbjct: 76  KKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAP 249


 Score = 40.2 bits (92), Expect = 0.027
 Identities = 19/74 (25%), Positives = 37/74 (49%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           DP +P+   S +  F+   R+E    +PD + +     +   ++WKTM+ +E+  F   +
Sbjct: 88  DPNRPKKPPSPFFVFLDDFRKEFNLANPD-NKSVGNVGRAAGKKWKTMTEEERAPFVAKS 264

Query: 64  KADKARYEREMKTY 77
           ++ K  Y   M+ Y
Sbjct: 265 QSKKTEYAVTMQQY 306


>L42571 Cricetulus griseus ribosomal transcription factor (UBF2) mRNA,
            Length = 2305
            
 Score = 52.7 bits (124), Expect = 5e-06
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 29/97 (29%)
 Frame = +1

Query: 44   CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKF 88
            CS++WK +S KEK  +       K  YE E+  ++    E                KK+ 
Sbjct: 877  CSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQT 1056

Query: 89   KDPNA--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNN 134
              P +              PKRP SA F+F  E R +++ + P LS  ++ + L  MWN+
Sbjct: 1057 TSPASKKPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEQRPELSESELTRLLARMWND 1236

Query: 135  TAADDK 140
             +   K
Sbjct: 1237 LSEKKK 1254


 Score = 51.9 bits (122), Expect = 8e-06
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
 Frame = +1

Query: 1    GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
            GKG  +KP+  +S+   F +  R + +++ P+ S   SE ++  +  W  +S K+K K++
Sbjct: 1093 GKGGSEKPKRPVSAMFIFSEEKRRQLQEQRPELSE--SELTRLLARMWNDLSEKKKAKYK 1266

Query: 61   DMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 120
                A KA+ ER       P GE +++ K P +PKR           ++  + G++    
Sbjct: 1267 AREAALKAQSER------MPGGEREERGKLPESPKRAEEI-------WQQSVIGDYLARF 1407

Query: 121  IGDVAKKLGEM---WNNTAADDK 140
              D  K L  M   WNN    +K
Sbjct: 1408 KNDRVKALKAMEMTWNNMEKKEK 1476


 Score = 41.4 bits (95), Expect = 0.012
 Identities = 29/94 (30%), Positives = 41/94 (42%), Gaps = 3/94 (3%)
 Frame = +1

Query: 48   WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGET--KKKFKDPNAPKRPP-SAFFLF 104
            W  M  KEK  +   A  D+ RYERE+     P   T   KK K    PK+PP + +  F
Sbjct: 1450 WNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSSKKMKFQGMPKKPPMNGYQKF 1629

Query: 105  CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
              E      GE   L + +   ++G  W   +   K+
Sbjct: 1630 SQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKE 1734


 Score = 34.0 bits (76), Expect = 2.0
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +1

Query: 35  VNFSEF-SKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNA 93
           V F +F    C  +W  +S  E  KF  + +      E     Y   KG  KK  K P+ 
Sbjct: 178 VAFKDFLGDMCKLKWVEIS-NEVRKFRTLTELILDAQEHVKNPY---KG--KKLKKHPDF 339

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW 132
           PK+P + +  F  E R K    HP +S  D+ K L + +
Sbjct: 340 PKKPLTPYLRFFMEKRAKYAKLHPEMSNLDLTKILSKKY 456


>U10401 Caenorhabditis elegans cosmid T20B12
             Length = 36811
             
 Score = 52.3 bits (123), Expect = 6e-06
 Identities = 32/90 (35%), Positives = 50/90 (55%)
 Frame = -1

Query: 52    SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK 111
             S + KG+ ++  +  + R ++E        G+  KK KDPNAPKR  SA+  +    R +
Sbjct: 14866 SKRRKGEPKEKREKKEKREKKE--------GKKGKKDKDPNAPKRATSAYMQWFLASRNE 14711

Query: 112   IKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
             +K +  G S+ DVAKK G  W   ++DDK+
Sbjct: 14710 LKED--GDSVADVAKKGGAKWKTMSSDDKK 14627


 Score = 35.2 bits (79), Expect(2) = 0.001
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 58    KFEDMAKADKARYEREMKTYI---PPKGETKKKFKDPNAPKRPPSAFFLFCSEY 108
             K+E+ A+ DK+RYE+EMK Y    PP   +K      +     PS+      EY
Sbjct: 14574 KWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSGPSSSKAISKEY 14413


 Score = 29.3 bits (64), Expect(2) = 0.001
 Identities = 16/53 (30%), Positives = 26/53 (48%)
 Frame = -1

Query: 4     DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 56
             DP  P+   S+Y  +    R E K+     +    + +KK   +WKTMS+ +K
Sbjct: 14776 DPNAPKRATSAYMQWFLASRNELKEDGDSVA----DVAKKGGAKWKTMSSDDK 14630


>X53025 P.falciparum DNA for erythrocyte membrane-associated antigen
           (clone
           Length = 253
           
 Score = 51.5 bits (121), Expect = 1e-05
 Identities = 26/58 (44%), Positives = 34/58 (57%), Gaps = 2/58 (3%)
 Frame = +2

Query: 85  KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQP 142
           +KK KDP+APKR  SA+  F  E R +I  + P LS  +  V K +GE WN     +K P
Sbjct: 41  RKKKKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAP 220


 Score = 47.6 bits (111), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 32/65 (48%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           K DP  P+  +S+Y FF +  R E   K P+ S + +   K   E W  +  KEK  FE 
Sbjct: 50  KKDPHAPKRSLSAYMFFAKEKRAEIISKQPELSKDVATVGKMIGEAWNKLGEKEKAPFEK 229

Query: 62  MAKAD 66
            A+ D
Sbjct: 230 KAQED 244


>U57939 Mus musculus mitochondrial transcription factor A gene,
           nuclear
           Length = 1449
           
 Score = 50.4 bits (118), Expect = 2e-05
 Identities = 45/137 (32%), Positives = 68/137 (48%), Gaps = 21/137 (15%)
 Frame = +1

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   MSSY  F      + K KHPDA +  SE  +K +  W+ +   EK  +E   K
Sbjct: 241 PKKP---MSSYLRFSTEQLPKFKAKHPDAKL--SELVRKIAALWRELPEAEKKVYEADFK 405

Query: 65  ADKARYEREMKTY---IPP-------KGETKKKFKDP-----------NAPKRPPSAFFL 103
           A+   Y+  +  Y   + P       K   +++ K               PKRP SA+ +
Sbjct: 406 AEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNI 585

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + SE   + K +    S     K + E W N + ++KQ
Sbjct: 586 YVSESFQEAKDD----SAQGKLKLVNEAWKNLSPEEKQ 687


 Score = 44.5 bits (103), Expect = 0.001
 Identities = 25/75 (33%), Positives = 39/75 (51%)
 Frame = +1

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K       +      K  +E WK +S +EK  +  +
Sbjct: 550 GKPKRPR---SAYNIYVSESFQEAKDDSAQGKL------KLVNEAWKNLSPEEKQAYIQL 702

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY+ EMK++
Sbjct: 703 AKDDRIRYDNEMKSW 747


>U63859 Mus musculus mitochondrial transcription factor A pseudogene
           mRNA,
           Length = 1318
           
 Score = 50.4 bits (118), Expect = 2e-05
 Identities = 45/137 (32%), Positives = 68/137 (48%), Gaps = 21/137 (15%)
 Frame = +2

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   MSSY  F      + K KHPDA +  SE  +K +  W+ +   EK  +E   K
Sbjct: 449 PKKP---MSSYLRFSTEQLPKFKAKHPDAKL--SELVRKIAALWRELPEAEKKVYEADFK 613

Query: 65  ADKARYEREMKTY---IPP-------KGETKKKFKDP-----------NAPKRPPSAFFL 103
           A+   Y+  +  Y   + P       K   +++ K               PKRP SA+ +
Sbjct: 614 AEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNI 793

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + SE   + K +    S     K + E W N + ++KQ
Sbjct: 794 YVSESFQEAKDD----SAQGKLKLVNEAWKNLSPEEKQ 895


 Score = 44.5 bits (103), Expect = 0.001
 Identities = 25/75 (33%), Positives = 39/75 (51%)
 Frame = +2

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K       +      K  +E WK +S +EK  +  +
Sbjct: 758 GKPKRPR---SAYNIYVSESFQEAKDDSAQGKL------KLVNEAWKNLSPEEKQAYIQL 910

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY+ EMK++
Sbjct: 911 AKDDRIRYDNEMKSW 955


>U63858 Mus musculus mitochondrial transcription factor A mRNA,
           complete
           Length = 772
           
 Score = 50.4 bits (118), Expect = 2e-05
 Identities = 45/137 (32%), Positives = 68/137 (48%), Gaps = 21/137 (15%)
 Frame = +2

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   MSSY  F      + K KHPDA +  SE  +K +  W+ +   EK  +E   K
Sbjct: 83  PKKP---MSSYLRFSTEQLPKFKAKHPDAKL--SELVRKIAALWRELPEAEKKVYEADFK 247

Query: 65  ADKARYEREMKTY---IPP-------KGETKKKFKDP-----------NAPKRPPSAFFL 103
           A+   Y+  +  Y   + P       K   +++ K               PKRP SA+ +
Sbjct: 248 AEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNI 427

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + SE   + K +    S     K + E W N + ++KQ
Sbjct: 428 YVSESFQEAKDD----SAQGKLKLVNEAWKNLSPEEKQ 529


 Score = 44.5 bits (103), Expect = 0.001
 Identities = 25/75 (33%), Positives = 39/75 (51%)
 Frame = +2

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K       +      K  +E WK +S +EK  +  +
Sbjct: 392 GKPKRPR---SAYNIYVSESFQEAKDDSAQGKL------KLVNEAWKNLSPEEKQAYIQL 544

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY+ EMK++
Sbjct: 545 AKDDRIRYDNEMKSW 589


>U13695 Human homolog of yeast mutL (hPMS1) gene, complete cds.
            Length = 3063
            
 Score = 50.4 bits (118), Expect = 2e-05
 Identities = 35/98 (35%), Positives = 53/98 (53%)
 Frame = +3

Query: 6    KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKA 65
            KKP   MS+ A FVQ  R +   ++P  S+   + + +  E WKT+S +EK K+E+ A  
Sbjct: 1794 KKP---MSASALFVQDHRPQFLIENPKTSLE--DATLQIEELWKTLSEEEKLKYEEKATK 1958

Query: 66   DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFL 103
            D  RY  +MK  I  + E++   KD     +P SA+ L
Sbjct: 1959 DLERYNSQMKRAI--EQESQMSLKDGRKKIKPTSAWNL 2066


 Score = 36.0 bits (81), Expect = 0.53
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 95   KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
            K+P SA  LF  ++RP+   E+P  S+ D   ++ E+W   + ++K
Sbjct: 1794 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEK 1931


>L07107 Mus musculus HMG box protein mRNA, complete cds.
           Length = 745
           
 Score = 50.4 bits (118), Expect = 2e-05
 Identities = 45/137 (32%), Positives = 68/137 (48%), Gaps = 21/137 (15%)
 Frame = +1

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   MSSY  F      + K KHPDA +  SE  +K +  W+ +   EK  +E   K
Sbjct: 46  PKKP---MSSYLRFSTEQLPKFKAKHPDAKL--SELVRKIAALWRELPEAEKKVYEADFK 210

Query: 65  ADKARYEREMKTY---IPP-------KGETKKKFKDP-----------NAPKRPPSAFFL 103
           A+   Y+  +  Y   + P       K   +++ K               PKRP SA+ +
Sbjct: 211 AEWKAYKEAVSKYKEQLTPSQLMGMEKEARQRRLKKKALVKRRELILLGKPKRPRSAYNI 390

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + SE   + K +    S     K + E W N + ++KQ
Sbjct: 391 YVSESFQEAKDD----SAQGKLKLVNEAWKNLSPEEKQ 492


 Score = 44.5 bits (103), Expect = 0.001
 Identities = 25/75 (33%), Positives = 39/75 (51%)
 Frame = +1

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K       +      K  +E WK +S +EK  +  +
Sbjct: 355 GKPKRPR---SAYNIYVSESFQEAKDDSAQGKL------KLVNEAWKNLSPEEKQAYIQL 507

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY+ EMK++
Sbjct: 508 AKDDRIRYDNEMKSW 552


>U35728 Xenopus laevis transcription factor A (xl-mtTFA) mRNA,
           nuclear gene
           Length = 2003
           
 Score = 49.6 bits (116), Expect = 4e-05
 Identities = 46/136 (33%), Positives = 79/136 (57%), Gaps = 28/136 (20%)
 Frame = +3

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PK+P   +S Y  +    R +  K++P+A +   + +K  +  WK +++ EK  +E +AK
Sbjct: 384 PKRP---LSGYLRYSVEQRPKLHKQYPEAKM--MDLTKIIALEWKGLASTEKEPYEAVAK 548

Query: 65  ADKARYEREMKTY---IPP---------------KGETKKKFKDPNA---PKRPPSAFFL 103
           AD  +Y  E+K Y   + P               K ++ +K ++  A   PKRP S F +
Sbjct: 549 ADLKKYREEVKQYREALSPVQLELHREQRRQRLAKRKSVRKKRELTALGRPKRPRSPFNI 728

Query: 104 FCSEYRPKIKG---EHPGLSIGDVAKKL----GEMWNNTAADDK 140
           F SE+    KG   +    S+ D  ++L     + +N+ A DDK
Sbjct: 729 FMSEHFQDAKGTSSQTKMKSLRDEWERLHNTQKQTYNHLAQDDK 860


 Score = 40.6 bits (93), Expect = 0.021
 Identities = 19/74 (25%), Positives = 32/74 (42%)
 Frame = +3

Query: 94  PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXX 153
           PKRP S +  +  E RPK+  ++P   + D+ K +   W   A+ +K+P           
Sbjct: 384 PKRPLSGYLRYSVEQRPKLHKQYPEAKMMDLTKIIALEWKGLASTEKEPYEAVAKADLKK 563

Query: 154 XXXDIAAYRAKGKP 167
              ++  YR    P
Sbjct: 564 YREEVKQYREALSP 605


 Score = 35.6 bits (80), Expect = 0.69
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
 Frame = +3

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFS-KKCSERWKTMSAKEKGKFED 61
           G PK+PR   + +         EH +   DA    S+   K   + W+ +   +K  +  
Sbjct: 693 GRPKRPRSPFNIFM-------SEHFQ---DAKGTSSQTKMKSLRDEWERLHNTQKQTYNH 842

Query: 62  MAKADKARYEREMKTYIPPKGE----------TKKKFKDPNAPK 95
           +A+ DK RYE EMK++     E           +K+FK P A +
Sbjct: 843 LAQDDKIRYENEMKSWEEQMIEIGRGDLIRLNQRKRFKKPRATR 974


>M62810 Human mitochondrial transcription factor 1 mRNA, complete
           cds.
           Length = 1936
           
 Score = 48.8 bits (114), Expect = 7e-05
 Identities = 41/137 (29%), Positives = 71/137 (50%), Gaps = 21/137 (15%)
 Frame = +1

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           PKKP   +SSY  F +      K ++PDA    +E  ++ ++RW+ +   +K  ++D  +
Sbjct: 280 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 444

Query: 65  ADKARYERE--------------------MKTYIPPKGETKKK-FKDPNAPKRPPSAFFL 103
           A+   Y+ E                    M  ++  K  TKKK       PKRP SA+ +
Sbjct: 445 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 624

Query: 104 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQ 141
           + +E   + KG+ P     +  K + E W N +  +K+
Sbjct: 625 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKE 726


 Score = 42.6 bits (98), Expect = 0.005
 Identities = 26/75 (34%), Positives = 36/75 (47%)
 Frame = +1

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K   P   +      K   E WK +S  EK  +   
Sbjct: 589 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 741

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY  EMK++
Sbjct: 742 AKEDETRYHNEMKSW 786


>Z48008;Z71256 S.cerevisiae chromosome IV cosmid 8119.
            Length = 37404
            
 Score = 47.3 bits (110), Expect = 2e-04
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
 Frame = -2

Query: 68   ARYEREMKTYIPPKGETKK---KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDV 124
            A +++E+ T    K +TK+   K +DPN PKRP +A+ L+C   + +I+ ++  L   DV
Sbjct: 6980 ASFKQELLTKPFRKSKTKRHKVKERDPNMPKRPTNAYLLYCEMNKERIR-QNGSL---DV 6813

Query: 125  AKKLGEMWNNTAADDKQP 142
             + L E W N    D++P
Sbjct: 6812 TRDLAEGWKNLNEQDRKP 6759


 Score = 32.8 bits (73), Expect = 4.6
 Identities = 14/74 (18%), Positives = 36/74 (47%)
 Frame = -2

Query: 4    DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
            DP  P+   ++Y  + +  +E  ++          + ++  +E WK ++ +++  +  + 
Sbjct: 6905 DPNMPKRPTNAYLLYCEMNKERIRQN------GSLDVTRDLAEGWKNLNEQDRKPYYKLY 6744

Query: 64   KADKARYEREMKTY 77
              D+ RY+ EM+ Y
Sbjct: 6743 SEDRERYQMEMEIY 6702


>L28094 Barley mRNA sequence.
           Length = 942
           
 Score = 46.9 bits (109), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 79  PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAA 137
           PP+G  +++ + P +P+  P AFF+   E+R + K ++P   S+  V K  GE W + + 
Sbjct: 177 PPRGRRERQARTPTSPRGTP-AFFVSMGEFREEFKQKNPKNKSVAPVGKAAGERWKSLSE 353

Query: 138 DDKQPXXXXXXXXXXXXXXDIAAY 161
            +K P               IAAY
Sbjct: 354 PEKAPFVAKANKLKGEYNKAIAAY 425


>M63424 Tetrahymena thermophila high-mobility-group protein C (HMG
           C), 3'
           Length = 686
           
 Score = 46.1 bits (107), Expect = 5e-04
 Identities = 25/82 (30%), Positives = 45/82 (54%)
 Frame = +1

Query: 5   PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 64
           P  P+  +S++  F     E  KK++P+A +  +E +   +E+WK +  KEK K+E +  
Sbjct: 214 PAPPKRPLSAFFLFK*HNYE*VKKENPNAKI--TELTSMIAEKWKAVGEKEKKKYETL*S 387

Query: 65  ADKARYEREMKTYIPPKGETKK 86
             KA+YE+ +  Y    G+ +K
Sbjct: 388 EAKAKYEKAL*AYEKKYGKPEK 453


 Score = 38.7 bits (88), Expect = 0.080
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +1

Query: 89  KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXX 148
           K P  PKRP SAFFLF       +K E+P   I ++   + E W      +K+       
Sbjct: 208 K*PAPPKRPLSAFFLFK*HNYE*VKKENPNAKITELTSMIAEKWKAVGEKEKKKYETL*S 387

Query: 149 XXXXXXXXDIAAYRAK-GKPD 168
                    + AY  K GKP+
Sbjct: 388 EAKAKYEKAL*AYEKKYGKPE 450


>U63860 Mus musculus mitochondrial transcription factor A pseudogene
           mRNA,
           Length = 1085
           
 Score = 44.5 bits (103), Expect = 0.001
 Identities = 25/75 (33%), Positives = 39/75 (51%)
 Frame = +3

Query: 3   GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 62
           G PK+PR   S+Y  +V    +E K       +      K  +E WK +S +EK  +  +
Sbjct: 186 GKPKRPR---SAYNIYVSESFQEAKDDSAQGKL------KLVNEAWKNLSPEEKQAYIQL 338

Query: 63  AKADKARYEREMKTY 77
           AK D+ RY+ EMK++
Sbjct: 339 AKDDRIRYDNEMKSW 383


>Z69727 S.pombe chromosome I cosmid c4G9.
             Length = 40915
             
 Score = 43.8 bits (101), Expect = 0.002
 Identities = 34/97 (35%), Positives = 58/97 (59%), Gaps = 28/97 (28%)
 Frame = -3

Query: 46    ERWKTMSAKE----KGKFEDMAKADKARYEREMKTYIPPK--GETKKKFKD--------- 90
             +++K ++A E    K K ++   A+K R+   ++++ P +   E +++ K+         
Sbjct: 22727 QKYKALTADEIQKYKNKLQEQFDAEKKRFMETLRSFTPTEIDSENRRRSKEAHSTGSRYY 22548

Query: 91    ----PNAPKRPPSAFFLFCSEYR--PKIKGEHPGLSIGDVAKKLGE-------MWNNTAA 137
                 P+ PK+P SAF LF  E R  PK++ E   L I +    L E        W   A 
Sbjct: 22547 RLRHPDVPKKPSSAFILFYKELRNNPKLRQE---LGIPEAISTLVEETQNASKAWKELAE 22377

Query: 138   DDKQP 142
             D K+P
Sbjct: 22376 DKKKP 22362


 Score = 37.1 bits (84), Expect = 0.24
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = -3

Query: 5     PKKPRGKMSSYAFFVQTCREEHKKKH----PDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
             PKKP    S++  F +  R   K +     P+A     E ++  S+ WK ++  +K  F 
Sbjct: 22526 PKKPS---SAFILFYKELRNNPKLRQELGIPEAISTLVEETQNASKAWKELAEDKKKPFI 22356

Query: 61    DMAKADKARYEREMK 75
             D +KA K +Y++ MK
Sbjct: 22355 DKSKALKEQYDKFMK 22311


>Y07542 X.laevis mRNA for SOX3 protein
           Length = 1691
           
 Score = 39.5 bits (90), Expect = 0.047
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +1

Query: 80  PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 139
           P G+      D +  KRP +AF ++    R K+  E+P +   +++K+LG  W   +  D
Sbjct: 160 PGGKGNASTLDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGADWKLLSDSD 339

Query: 140 KQP 142
           K+P
Sbjct: 340 KRP 348


>X86381 P.paniscus SRY gene
           Length = 615
           
 Score = 39.5 bits (90), Expect = 0.047
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +1

Query: 83  ETKKKFKDP--NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
           ET +  KD   +  KRP +AFF++  + R K+  E+P +   +++K+LG  W    A +K
Sbjct: 139 ETGENSKDSVQDRVKRPMNAFFVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTAAEK 318

Query: 141 QP 142
            P
Sbjct: 319 WP 324


 Score = 35.2 bits (79), Expect = 0.91
 Identities = 27/104 (25%), Positives = 42/104 (39%)
 Frame = +1

Query: 4   DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
           D  + R K    AFFV +  +  K    +  +  SE SK+   +WK ++A EK  F   A
Sbjct: 160 DSVQDRVKRPMNAFFVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTAAEKWPFFQEA 339

Query: 64  KADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSE 107
           +  +A +  +   Y   +   K      N    P     + CSE
Sbjct: 340 QKLQAMHREKYPNY-KYRPRRKANMLPKNCSLLPADPASVLCSE 468


>Z30265 O.aries sry gene for sex determining region of Y chromosome
           Length = 723
           
 Score = 39.1 bits (89), Expect = 0.061
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = +1

Query: 81  KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 140
           +GE  ++    N  KRP +AF ++  E R K+  E+P L   +++K+LG  W      +K
Sbjct: 157 RGENVRE-SSQNHVKRPMNAFIVWSRERRRKVALENPKLQNSEISKQLGYEWKRLTDAEK 333

Query: 141 QP 142
           +P
Sbjct: 334 RP 339


>Z30327 B.taurus sry gene for sex-determining region Y
           Length = 690
           
 Score = 38.7 bits (88), Expect = 0.080
 Identities = 17/48 (35%), Positives = 28/48 (57%)
 Frame = +1

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 163 KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 306


>Z30321 B.bonasus sry gene encoding sex-determining region Y
           Length = 690
           
 Score = 38.7 bits (88), Expect = 0.080
 Identities = 17/48 (35%), Positives = 28/48 (57%)
 Frame = +1

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 163 KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 306


>I34580 Sequence 1 from patent US 5596089.
            Length = 1661
            
 Score = 38.7 bits (88), Expect = 0.080
 Identities = 17/48 (35%), Positives = 28/48 (57%)
 Frame = +3

Query: 95   KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 1074 KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 1217


>E11537 DNA from Y chromosome which contain bovine Sry gene.
            Length = 2840
            
 Score = 38.7 bits (88), Expect = 0.080
 Identities = 17/48 (35%), Positives = 28/48 (57%)
 Frame = +2

Query: 95   KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 1229 KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 1372


>U15569;L36821 Bos taurus sex determining region Y protein (SRY) gene,
            complete
            Length = 1800
            
 Score = 38.7 bits (88), Expect = 0.080
 Identities = 17/48 (35%), Positives = 28/48 (57%)
 Frame = +3

Query: 95   KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
            KRP +AF ++  E R K+  E+P +   D++K+LG  W      +K+P
Sbjct: 1074 KRPMNAFIVWSRERRRKVALENPKMKNSDISKQLGYEWKRLTDAEKRP 1217


>D83256 Rainbow trout mRNA for SoxP1, complete cds.
           Length = 3626
           
 Score = 38.3 bits (87), Expect = 0.10
 Identities = 20/65 (30%), Positives = 38/65 (57%)
 Frame = +1

Query: 78  IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 137
           +P +G    K K P+  KRP +AF ++    R K+  ++P L   +++K LG++W   + 
Sbjct: 502 MPVRGNGSLKNK-PHV-KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSE 675

Query: 138 DDKQP 142
           ++K+P
Sbjct: 676 NEKRP 690


>U66141 Mus musculus transcription factor Sox-M (sox-M) mRNA,
           partial cds.
           Length = 2761
           
 Score = 38.3 bits (87), Expect = 0.10
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K     KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 540 TLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 719

Query: 136 AADDKQP 142
              DK+P
Sbjct: 720 NESDKRP 740


>AF017182 Mus musculus putative transcription factor (Sox10) mRNA,
           partial
           Length = 2761
           
 Score = 38.3 bits (87), Expect = 0.10
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K     KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 605 TLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 784

Query: 136 AADDKQP 142
              DK+P
Sbjct: 785 NESDKRP 805


>AJ001029 Rattus norvegicus mRNA for Sox10 protein
           Length = 3030
           
 Score = 38.3 bits (87), Expect = 0.10
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K     KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 838 TLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 1017

Query: 136 AADDKQP 142
              DK+P
Sbjct: 1018NESDKRP 1038


>AJ001183 Homo sapiens mRNA for Sox10 protein
           Length = 2565
           
 Score = 38.3 bits (87), Expect = 0.10
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +1

Query: 76  TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 135
           T +P         K     KRP +AF ++    R K+  ++P L   +++K LG++W   
Sbjct: 376 TLVPMPVRVNGASKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 555

Query: 136 AADDKQP 142
              DK+P
Sbjct: 556 NESDKRP 576


>Z30646 C.hircus SRY gene for sex determining region Y
           Length = 723
           
 Score = 37.9 bits (86), Expect = 0.14
 Identities = 17/48 (35%), Positives = 28/48 (57%)
 Frame = +1

Query: 95  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP 142
           KRP +AF ++  E R K+  E+P L   +++K+LG  W      +K+P
Sbjct: 196 KRPMNAFIVWSRERRRKVALENPKLQNSEISKQLGYEWKRLTDAEKRP 339


>L29543 Mus pahari sex-determining protein gene, 5' end.
           Length = 515
           
 Score = 35.6 bits (80), Expect = 0.69
 Identities = 26/90 (28%), Positives = 41/90 (44%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 90  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 254

Query: 62  MAKADKARYEREMKTYIPPKGETKKKFKDP 91
            A+  K  +  +   Y   K +  +K K P
Sbjct: 255 EAQRLKTLHREKYPNY---KYQPHRKAKVP 335


>X89730 R.norvegicus DNA for Sry gene (partial)
           Length = 459
           
 Score = 35.6 bits (80), Expect = 0.69
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  SE SK+   +WK+++  EK  F  
Sbjct: 100 EGQVKRPMN-----AFMVWSRGERHKLAQQNPSMQNSEISKQLGYQWKSLTEAEKRPFFQ 264

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 265 EAQRLKTLHREKYPNY 312


>U70658 Mus hortulanus sex determining protein (Sry) gene, complete
           cds.
           Length = 1263
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 40  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 204

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 205 EAQRLKTLHREKYPNY 252


>AF009521 Mus spretus sex determining protein (Sry) gene, complete
           cds.
           Length = 1408
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 70  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 234

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 235 EAQRLKTLHREKYPNY 282


>U70651 Mus musculus musculus sex determining protein (Sry) gene,
           complete
           Length = 1611
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 61  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 225

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 226 EAQRLKTLHREKYPNY 273


>U70642 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1546
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +1

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 67  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 231

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 232 EAQRLKTLHREKYPNY 279


>U70659 Mus spretus sex determining protein (Sry) gene, complete
           cds.
           Length = 1405
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70657 Mus musculus castaneus sex determining protein (Sry) gene,
           complete
           Length = 1549
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70654 Mus musculus musculus sex determining protein (Sry) gene,
           complete
           Length = 1598
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 60  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 224

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 225 EAQRLKTLHREKYPNY 272


>U70653 Mus musculus musculus sex determining protein (Sry) gene,
           complete
           Length = 1586
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 60  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 224

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 225 EAQRLKTLHREKYPNY 272


>U70652 Mus musculus musculus sex determining protein (Sry) gene,
           complete
           Length = 1612
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 68  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 232

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 233 EAQRLKTLHREKYPNY 280


>U70650 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1552
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70649 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1547
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70648 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1546
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70647 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1546
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70646 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1558
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70645 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1546
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70644 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1549
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 65  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 229

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 230 EAQRLKTLHREKYPNY 277


>U70641 Mus musculus domesticus sex determining protein (Sry) gene,
           Length = 1550
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 60  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 224

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 225 EAQRLKTLHREKYPNY 272


>L29550 Mus spicilegus Y-linked sex determining (Sry) gene, partial
           cds.
           Length = 515
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 90  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 254

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 255 EAQRLKTLHREKYPNY 302


>L29544 Mus spretus sex-determing protein gene, 5' end.
           Length = 515
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 90  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 254

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 255 EAQRLKTLHREKYPNY 302


>L29551 Mus musculus domesticus Y-linked sex determining (Sry) gene,
           Length = 515
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +3

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 90  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 254

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 255 EAQRLKTLHREKYPNY 302


>AF009519 Mus musculus domesticus sex determining protein (Sry)
           gene,
           Length = 1560
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 68  EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 232

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 233 EAQRLKTLHREKYPNY 280


>U03645 Mus musculus domesticus Torino (Sry) gene, complete cds.
           Length = 2215
           
 Score = 34.8 bits (78), Expect = 1.2
 Identities = 22/76 (28%), Positives = 35/76 (45%)
 Frame = +2

Query: 2   KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 61
           +G  K+P       AF V +  E HK    + S+  +E SK+   RWK+++  EK  F  
Sbjct: 707 EGHVKRPMN-----AFMVWSRGERHKLAQQNPSMQNTEISKQLGCRWKSLTEAEKRPFFQ 871

Query: 62  MAKADKARYEREMKTY 77
            A+  K  +  +   Y
Sbjct: 872 EAQRLKTLHREKYPNY 919


  Database: embl.fas
    Posted date:  May 15, 1998  5:37 PM
  Number of letters in database: 675,252,082
  Number of sequences in database:  442,729
  
Lambda     K      H
   0.313    0.131    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140890138
Number of Sequences: 442729
Number of extensions: 2085205
Number of successful extensions: 9457
Number of sequences better than 10.0: 460
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8813
Number of HSP's gapped (non-prelim): 503
length of query: 214
length of database: 225,084,027
effective HSP length: 55
effective length of query: 159
effective length of database: 200,733,932
effective search space: 31916695188
effective search space used: 31916695188
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 70 (31.7 bits)
