Uses of Class org.biojava.bio.seq.io.agave.StAXFeatureHandler (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
org.biojava.bio.seq.io.agave.StAXFeatureHandler

Packages that use StAXFeatureHandler
org.biojava.bio.seq.io.agave | Classes for converting between AGAVE XML and BioJava objects.

Uses of StAXFeatureHandler in org.biojava.bio.seq.io.agave

Subclasses of StAXFeatureHandler in org.biojava.bio.seq.io.agave
`class` | `AGAVEAssemblyHandler`
`class` | `AGAVEBioSeqHandler` Handles the AGAVE <bio_sequence> element
`class` | `AGAVEBioSequenceHandler` Handles the AGAVE <bio_sequence> element
`class` | `AGAVECdsHandler` Handles the AGAVE <cds> element
`class` | `AGAVEChromosomeHandler` Handles the AGAVE <chromosome> element
`class` | `AGAVEClassificationHandler`
`class` | `AGAVECompResultHandler`
`class` | `AGAVEComputationHandler`
`class` | `AGAVEContigHandler` Handles the AGAVE <contig> element
`class` | `AGAVEEvidenceHandler`
`class` | `AGAVEFragmentOrderHandler`
`class` | `AGAVEFragmentOrientationHandler`
`class` | `AGAVEGeneHandler`
`class` | `AGAVEHandler` Handles the root AGAVE element modified for agave format
`class` | `AGAVEMrnaHandler` Handles the AGAVE <mrna> element
`class` | `AGAVEPredictedProteinHandler` Handles the AGAVE <predicted_protein> element
`class` | `AGAVEQueryRegionPropHandler`
`class` | `AGAVEResultGroupHandler`
`class` | `AGAVESeqFeatureHandler` seq_feature
`class` | `AGAVESeqMapHandler` sequence_map
`class` | `AGAVETranscriptHandler` transcript
`class` | `AGAVEUnorderedFragmentsHandler` unordered_fragments

Fields in org.biojava.bio.seq.io.agave declared as StAXFeatureHandler
`protected StAXFeatureHandler` | `StAXFeatureHandler.staxenv`
`protected StAXFeatureHandler` | `StAXPropertyHandler.staxenv`

Methods in org.biojava.bio.seq.io.agave with parameters of type StAXFeatureHandler
`StAXContentHandler` | `StAXHandlerFactory.getHandler(StAXFeatureHandler staxenv)` Return a suitable StAX content handler.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES