org.biojava.bio.program.hmmer (BioJava-1.5-beta API)
Keywords: org.biojava.bio.program.hmmer package

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## Package org.biojava.bio.program.hmmer

Tools for working with profile Hidden Markov Models from the HMMer package.

See:
Description

Class Summary
FullHmmerProfileHMM | This is a class for representing the full HMMER generated Profile HMM (including loop states N and C terminal looping states).
HmmerProfileHMM | This is a class for representing HMMER generated Profile HMM.
HmmerProfileParser | A class for parsing in Hmmer markov models from HMM_ls files generated by HMMER training note that this class is still currently experimental.
ProfileEmissionState | A state in a HMMer model.

## Package org.biojava.bio.program.hmmer Description

Tools for working with profile Hidden Markov Models from the HMMer package. See the HMMer website for more information.

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