Uses of Class org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
org.biojava.bio.symbol.IntegerAlphabet.IntegerSymbol

Packages that use IntegerAlphabet.IntegerSymbol
org.biojava.bio.program.phred | Parser for Phred output
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them.

Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.program.phred

Methods in org.biojava.bio.program.phred that return IntegerAlphabet.IntegerSymbol
`static IntegerAlphabet.IntegerSymbol` | `PhredTools.integerSymbolFromPhred(Symbol phredSym)` Retrives the IntegerSymbol component of the Phred BasisSymbol from the PHRED alphabet.

Methods in org.biojava.bio.program.phred with parameters of type IntegerAlphabet.IntegerSymbol
`static double` | `PhredTools.pFromQuality(IntegerAlphabet.IntegerSymbol quality)` Calculates the probability of an error from the quality score via the formula P_e = 10**(QV/-10)

Uses of IntegerAlphabet.IntegerSymbol in org.biojava.bio.symbol

Methods in org.biojava.bio.symbol that return IntegerAlphabet.IntegerSymbol
`IntegerAlphabet.IntegerSymbol` | `IntegerAlphabet.getSymbol(int val)` Retrieve the Symbol for an int.
`IntegerAlphabet.IntegerSymbol` | `IntegerAlphabet.SubIntegerAlphabet.getSymbol(int val)`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES