org.biojava.bio.structure (BioJava-1.5-beta API)
Keywords: org.biojava.bio.structure package

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## Package org.biojava.bio.structure

Interfaces and classes for protein structure (PDB).

See:
Description

Interface Summary
AminoAcid | AminoAcid inherits most from Hetatom.
Atom | simple interface of an Atom.
Chain | Defines the interface for a Chain.
Group | This is the datastructure for a single Group of atoms.
Structure | Interface for a structure object.

Class Summary
AlphaCTools | AlphaCTools is a collection of static convenience methods for dealing with Alpha Carbon Backbone Phi / Psi angles.
AminoAcidImpl | AminoAcid inherits most from Hetatom.
AtomImpl | Implementation of an Atom of a PDB file.
AtomIterator | an iterator over all atoms of a structure / group.
Calc | utility operations on Atoms, AminoAcids, etc.
ChainImpl | A Chain in a PDB file.
GroupIterator | an iterator over all groups of a structure.
HetatomImpl | Generic Implementation of a Group interface.
Mutator | A class that can change one amino acid to another.
NucleotideImpl | A nucleotide group is almost the same as a Hetatm group.
StandardAminoAcid | A class that provides a set of standard amino acids
StructureImpl | Implementation of a PDB Structure.
StructureTools | a class that provides some tool methods
SVDSuperimposer | a class that calculates the superimposition between two sets of atoms inspired by the biopython SVDSuperimposer class...

Exception Summary
StructureException | An exception during the parsing of a PDB file.

## Package org.biojava.bio.structure Description

Interfaces and classes for protein structure (PDB).

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