Uses of Interface org.biojava.bio.dist.DistributionFactory (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojava.bio.dist.DistributionFactory

Packages that use DistributionFactory
org.biojava.bio.dist | Probability distributions over Alphabets.
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.
org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package.

Uses of DistributionFactory in org.biojava.bio.dist

Classes in org.biojava.bio.dist that implement DistributionFactory
`static class` | `DistributionFactory.DefaultDistributionFactory` The default DistributionFactory implementation.
`class` | `OrderNDistributionFactory` Default factory for Order-N distributions.

Fields in org.biojava.bio.dist declared as DistributionFactory
`static DistributionFactory` | `OrderNDistributionFactory.DEFAULT` Factory which used DistributionFactory.DEFAULT to create conditioned distributions.
`static DistributionFactory` | `DistributionFactory.DEFAULT` The default DistributionFactory object.

Constructors in org.biojava.bio.dist with parameters of type DistributionFactory
`OrderNDistributionFactory(DistributionFactory df)` Construct a new OrderNDistributionFactory with a specified factory for conditioned distributions.
`TranslatedDistribution(ReversibleTranslationTable table, Distribution other, DistributionFactory distFact)` Create a new TranslatedDistribution.

Uses of DistributionFactory in org.biojava.bio.dp

Constructors in org.biojava.bio.dp with parameters of type DistributionFactory
`ProfileHMM(Alphabet alpha, int columns, DistributionFactory matchFactory, DistributionFactory insertFactory)` Deprecated.
`ProfileHMM(Alphabet alpha, int columns, DistributionFactory matchFactory, DistributionFactory insertFactory, String name)` Create a new ProfileHMM.
`SimpleWeightMatrix(Alphabet alpha, int columns, DistributionFactory dFact)`

Uses of DistributionFactory in org.biojava.bio.program.hmmer

Constructors in org.biojava.bio.program.hmmer with parameters of type DistributionFactory
`HmmerProfileHMM(Alphabet alpha, int columns, DistributionFactory matchFactory, DistributionFactory insertFactory, String name)`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES