Uses of Interface org.biojava.bio.seq.SequenceAnnotator (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Interface
org.biojava.bio.seq.SequenceAnnotator

Packages that use SequenceAnnotator
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.
org.biojava.bio.molbio | The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR.
org.biojava.bio.program.gff | GFF manipulation.
org.biojava.bio.seq.db | Collections of biological sequence data.

Uses of SequenceAnnotator in org.biojava.bio.dp

Classes in org.biojava.bio.dp that implement SequenceAnnotator
`class` | `WeightMatrixAnnotator` Annotates a sequence with hits to a weight-matrix.

Uses of SequenceAnnotator in org.biojava.bio.molbio

Classes in org.biojava.bio.molbio that implement SequenceAnnotator
`class` | `RestrictionMapper` `RestrictionMapper` is a class for annotating `Sequence`s with `Feature`s which represent restriction sites.

Uses of SequenceAnnotator in org.biojava.bio.program.gff

Methods in org.biojava.bio.program.gff that return SequenceAnnotator
`SequenceAnnotator` | `GFFEntrySet.getAnnotator()` Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet.
`SequenceAnnotator` | `GFFEntrySet.getAnnotator(boolean checkSeqName)` Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet.

Uses of SequenceAnnotator in org.biojava.bio.seq.db

Constructors in org.biojava.bio.seq.db with parameters of type SequenceAnnotator
`AnnotatedSequenceDB(SequenceDB parent, SequenceAnnotator a)`

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES