Uses of Interface org.biojavax.CrossRef (BioJava-1.5-beta API)

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## Uses of Interface
org.biojavax.CrossRef

Packages that use CrossRef
org.biojavax | The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio.db.biosql |
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features.

Uses of CrossRef in org.biojavax

Classes in org.biojavax that implement CrossRef
`class` | `SimpleCrossRef` A basic CrossRef implementation.

Methods in org.biojavax that return CrossRef
`CrossRef` | `DocRef.getCrossref()` The document reference may refer to an object in another database.
`CrossRef` | `SimpleDocRef.getCrossref()` The document reference may refer to an object in another database.
`CrossRef` | `SimpleRankedCrossRef.getCrossRef()` Return the cross reference associated with this object.
`CrossRef` | `RankedCrossRef.getCrossRef()` Return the cross reference associated with this object.

Methods in org.biojavax with parameters of type CrossRef
`BioEntry` | `CrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry`
`BioEntry` | `DummyCrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry` All responses are null.
`SymbolList` | `CrossReferenceResolver.getRemoteSymbolList(CrossRef cr, Alphabet a)` Given a cross reference, return the corresponding symbol list.
`SymbolList` | `DummyCrossReferenceResolver.getRemoteSymbolList(CrossRef cr, Alphabet a)` Given a cross reference, return the corresponding symbol list. All responses are instances of InfinitelyAmbiguousSymbolList.
`void` | `DocRef.setCrossref(CrossRef crossref)` The document reference may refer to an object in another database.
`void` | `SimpleDocRef.setCrossref(CrossRef crossref)` The document reference may refer to an object in another database.

Constructors in org.biojavax with parameters of type CrossRef
`SimpleRankedCrossRef(CrossRef crossref, int rank)` Constructs a new crossref with a rank.

Uses of CrossRef in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql with parameters of type CrossRef
`BioEntry` | `BioSQLCrossReferenceResolver.getRemoteBioEntry(CrossRef cr)` Given the `CrossRef` return the corresponding `BioEntry`
`SymbolList` | `BioSQLCrossReferenceResolver.getRemoteSymbolList(CrossRef cr, Alphabet a)` Given a cross reference, return the corresponding symbol list.

Uses of CrossRef in org.biojavax.bio.seq

Methods in org.biojavax.bio.seq that return CrossRef
`CrossRef` | `MultiSourceCompoundRichLocation.getCrossRef()` Retrieves the crossref associated with this location. ALWAYS RETURNS NULL
`CrossRef` | `SimpleRichLocation.getCrossRef()` Retrieves the crossref associated with this location.
`CrossRef` | `EmptyRichLocation.getCrossRef()` Retrieves the crossref associated with this location. ALWAYS RETURNS NULL
`CrossRef` | `RichLocation.getCrossRef()` Retrieves the crossref associated with this location.

Methods in org.biojavax.bio.seq with parameters of type CrossRef
`protected void` | `SimpleRichLocation.setCrossRef(CrossRef crossRef)`

Constructors in org.biojavax.bio.seq with parameters of type CrossRef
`SimpleRichLocation(Position pos, int rank, RichLocation.Strand strand, CrossRef crossRef)` Creates a new instance of SimpleRichSequenceLocation that points to a single position on another sequence.
`SimpleRichLocation(Position min, Position max, int rank, RichLocation.Strand strand, CrossRef crossRef)` Creates a new instance of SimpleRichSequenceLocation that points to a range position on another sequence.

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