BioPattern (BioJava-1.5-beta API)
Keywords: org.biojava.bio.search.BioPattern interface

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## org.biojava.bio.search
Interface BioPattern

All Known Implementing Classes:
  MaxMismatchPattern, SeqContentPattern

    public interface BioPattern

Author:
  Matthew Pocock

Method Summary
`BioMatcher` | `matcher(SymbolList symList)` Get a matcher that will use these parameters to search a SymbolList.

Method Detail

### matcher

    BioMatcher matcher(SymbolList symList)
                       throws IllegalAlphabetException

  Get a matcher that will use these parameters to search a SymbolList.

  The resulting BioMatcher is independant of this BioPattern. In particular, calling any mutator methods on this pattern will not affect the matcher.

  Parameters:
    `symList` - the SymbolList to match against
  Returns:
    a BioMatcher that will perform the search
  Throws:
    `IllegalAlphabetException` - if symList is not over the right alphabet

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