Uses of Interface org.biojava.bio.search.SearchContentHandler (BioJava-1.5-beta API)

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## Uses of Interface
org.biojava.bio.search.SearchContentHandler

Packages that use SearchContentHandler
org.biojava.bio.program.sax | Parsers which offer XML representations of the output from common bioinformatics tools.
org.biojava.bio.program.ssbind | Creation of objects from SAX events using the BioJava BlastLikeDataSetCollection DTD.
org.biojava.bio.search | Interfaces and classes for representing sequence similarity search results.

Uses of SearchContentHandler in org.biojava.bio.program.sax

Classes in org.biojava.bio.program.sax that implement SearchContentHandler
`class` | `FastaSearchSAXParser` `FastaSearchSAXParser` is a SAX2 compliant parser for '-m 10' format output from the the Fasta search program (see the Fasta documentation for details of this format).

Uses of SearchContentHandler in org.biojava.bio.program.ssbind

Classes in org.biojava.bio.program.ssbind that implement SearchContentHandler
`class` | `BlastLikeHomologyBuilder` `BlastLikeHomologyBuilder` populates a `List` with `Homology` instances created from SAX events supplied via a `SeqSimilarityAdapter`.
`class` | `BlastLikeSearchBuilder` `BlastLikeSearchBuilder` will create `SeqSimilaritySearchResult`s from SAX events via a `SeqSimilarityAdapter`.
`class` | `SimilarityPairBuilder` `SimilarityPairBuilder` annotates query and subject `Sequence` with `SimilarityPairFeature`s created from SAX events supplied via a `SeqSimilarityAdapter`.

Methods in org.biojava.bio.program.ssbind that return SearchContentHandler
`SearchContentHandler` | `SeqSimilarityAdapter.getSearchContentHandler()` `getSearchContentHandler` gets the handler which will recieve the method calls generated by the adapter.
`SearchContentHandler` | `SeqSimilarityStAXAdapter.getSearchContentHandler()` `getSearchContentHandler` gets the handler which will receive the method calls generated by the adapter.

Methods in org.biojava.bio.program.ssbind with parameters of type SearchContentHandler
`void` | `SeqSimilarityAdapter.setSearchContentHandler(SearchContentHandler scHandler)` `setSearchContentHandler` sets the handler which will recieve the method calls generated by the adapter.
`void` | `SeqSimilarityStAXAdapter.setSearchContentHandler(SearchContentHandler scHandler)` `setSearchContentHandler` sets the handler which will recieve the method calls generated by the adapter.

Uses of SearchContentHandler in org.biojava.bio.search

Subinterfaces of SearchContentHandler in org.biojava.bio.search
`interface` | `SearchBuilder` The `SearchBuilder` interface is to be used by objects which accumulate state via a `SearchContentHandler` and then construct a `SeqSimilaritySearchResult` object.

Classes in org.biojava.bio.search that implement SearchContentHandler
`class` | `FilteringContentHandler`
`class` | `SearchContentAdapter` An adapter for SearchContentHandler.
`class` | `SearchContentFilter` Filtering implementation of SearchContentHandler that by default passes all messages on to the next delegate in the chain.
`class` | `SearchContentHandlerDebugger` This class prints to a PrintStream calls to the SearchContentHandler interface in human readable form.

Methods in org.biojava.bio.search with parameters of type SearchContentHandler
`void` | `FilteringContentHandler.setSearchContentHandler(SearchContentHandler delegate)`

Constructors in org.biojava.bio.search with parameters of type SearchContentHandler
`FilteringContentHandler(BlastLikeSearchFilter filter, SearchContentHandler delegate)`
`SearchContentFilter(SearchContentHandler delegate)`

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