Uses of Package org.biojava.bio.dist (BioJava-1.5-beta API)

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Package
org.biojava.bio.dist

Packages that use org.biojava.bio.dist
org.biojava.bio.dist | Probability distributions over Alphabets.
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms.
org.biojava.bio.gui | Graphical interfaces for biojava objects.
org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package.
org.biojava.bio.program.phred | Parser for Phred output
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects.
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them.
org.biojavax.ga.functions | GA functions
org.biojavax.ga.util | Utility functions and helper classes

Classes in org.biojava.bio.dist used by org.biojava.bio.dist
AbstractDistribution An abstract implementation of Distribution.
Count An encapsulation of a count over the Symbols within an alphabet.
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory A thing that can make Distributions.
DistributionTrainer An object that can be used to train a distribution up.
DistributionTrainerContext A context within a group of DistributionTrainers can be trained together.
IgnoreCountsTrainer A distribution trainer that just ignores all counts.
OrderNDistribution Provides an N'th order distribution.
SimpleDistribution A simple implementation of a distribution, which works with any finite alphabet.

Classes in org.biojava.bio.dist used by org.biojava.bio.dp
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory A thing that can make Distributions.
DistributionTrainerContext A context within a group of DistributionTrainers can be trained together.
SimpleDistributionTrainerContext A no-frills implementation of DistributionTrainerContext.

Classes in org.biojava.bio.dist used by org.biojava.bio.gui
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.

Classes in org.biojava.bio.dist used by org.biojava.bio.program.hmmer
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.
DistributionFactory A thing that can make Distributions.

Classes in org.biojava.bio.dist used by org.biojava.bio.program.phred
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.

Classes in org.biojava.bio.dist used by org.biojava.bio.seq
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.

Classes in org.biojava.bio.dist used by org.biojava.bio.symbol
Distribution An encapsulation of a probability distribution over the Symbols within an alphabet.

Classes in org.biojava.bio.dist used by org.biojavax.ga.functions
OrderNDistribution Provides an N'th order distribution.

Classes in org.biojava.bio.dist used by org.biojavax.ga.util
OrderNDistribution Provides an N'th order distribution.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES