SwissprotSequenceDB (BioJava-1.5-beta API)
Keywords: org.biojava.bio.seq.db.SwissprotSequenceDB class

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## org.biojava.bio.seq.db
Class SwissprotSequenceDB

    java.lang.Object
      org.biojava.bio.seq.db.SwissprotSequenceDB

    public class SwissprotSequenceDB

extends Object

This class contains functions accessing sequences in swiss-prot.

Author:
  Lei Lai, Matthew Pocock

Constructor Summary
`SwissprotSequenceDB()`

Method Summary
`boolean` | `checkIOException()`
`protected URL` | `getAddress(String id)`
`protected Alphabet` | `getAlphabet()`
`String` | `getName()`
`Sequence` | `getSequence(String id)`
`protected SequenceFormat` | `getSequenceFormat()`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### SwissprotSequenceDB

    public SwissprotSequenceDB()

Method Detail

### getSequenceFormat

    protected SequenceFormat getSequenceFormat()

### getAlphabet

    protected Alphabet getAlphabet()

### getAddress

    protected URL getAddress(String id)
                      throws MalformedURLException

  Throws:
    `MalformedURLException`

### getName

    public String getName()

### getSequence

    public Sequence getSequence(String id)
                         throws BioException

  Throws:
    `BioException`

### checkIOException

    public boolean checkIOException()

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