Uses of Interface org.biojavax.bio.seq.RichLocation (BioJava-1.5-beta API)

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## Uses of Interface
org.biojavax.bio.seq.RichLocation

Packages that use RichLocation
org.biojavax | The Biojava extensions packages, classes that extend the core biojava functionality
org.biojavax.bio.db.biosql |
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features.
org.biojavax.bio.seq.io | Classes to support the I/O of RichSequence and Bioentry objects.

Uses of RichLocation in org.biojavax

Methods in org.biojavax that return RichLocation
`RichLocation` | `RankedDocRef.getLocation()` If this object was constructed using a location instead of two integers, then this method will return that location.
`RichLocation` | `SimpleRankedDocRef.getLocation()`

Methods in org.biojavax with parameters of type RichLocation
`protected void` | `SimpleRankedDocRef.setLocation(RichLocation location)`

Constructors in org.biojavax with parameters of type RichLocation
`SimpleRankedDocRef(DocRef docref, RichLocation location, int rank)` Constructs a new docref for a given location.

Uses of RichLocation in org.biojavax.bio.db.biosql

Methods in org.biojavax.bio.db.biosql that return RichLocation
`RichLocation` | `BioSQLFeatureFilter.ContainedByRichLocation.getRichLocation()`
`RichLocation` | `BioSQLFeatureFilter.OverlapsRichLocation.getRichLocation()`

Constructors in org.biojavax.bio.db.biosql with parameters of type RichLocation
`BioSQLFeatureFilter.ContainedByRichLocation(RichLocation loc)` Creates a filter that returns everything contained within loc.
`BioSQLFeatureFilter.OverlapsRichLocation(RichLocation loc)` Creates a filter that returns everything overlapping loc.

Uses of RichLocation in org.biojavax.bio.seq

Classes in org.biojavax.bio.seq that implement RichLocation
`class` | `CompoundRichLocation` An implementation of RichLocation which covers multiple locations, but on the same strand of the same (optionally circular) sequence.
`class` | `EmptyRichLocation` An Empty implementation of RichLocation.
`class` | `MultiSourceCompoundRichLocation` An implementation of RichLocation which possibly covers multiple locations, on different strands, different circular lengths, or different sequences.
`class` | `SimpleRichLocation` A simple implementation of RichLocation.

Fields in org.biojavax.bio.seq declared as RichLocation
`static RichLocation` | `RichLocation.EMPTY_LOCATION` The empty location matches nothing.

Methods in org.biojavax.bio.seq that return RichLocation
`static RichLocation` | `RichLocation.Tools.construct(Collection members)` Constructs a RichLocation object based on the given collection of members.
`static RichLocation` | `RichLocation.Tools.enrich(Location l)` Attempts to convert a plain Location into a RichLocation.

Methods in org.biojavax.bio.seq with parameters of type RichLocation
`static Collection` | `RichLocation.Tools.flatten(RichLocation location)` Takes a location and returns the set of all members.

Uses of RichLocation in org.biojavax.bio.seq.io

Methods in org.biojavax.bio.seq.io that return RichLocation
`static RichLocation` | `GenbankLocationParser.parseLocation(Namespace featureNS, String featureAccession, String locationString)` Parses a location.
`static RichLocation` | `UniProtLocationParser.parseLocation(String loc)` Parses a location.

Methods in org.biojavax.bio.seq.io with parameters of type RichLocation
`static String` | `GenbankLocationParser.writeLocation(RichLocation l)` Writes a location in Genbank format.
`static String` | `UniProtLocationParser.writeLocation(RichLocation l)` Writes a location in UniProt format.

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