ssbind (BioJava Demos API)
Keywords: ssbind package

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## Package ssbind

Class Summary
AlignmentBuilder | This filter intercepts the querySequence and subjectSequence events to build an alignment.
CountHits | Prints out a count of the total number of hits in a report.
CountSubHits | Prints out a count of the total number of sub hits in a report.
Echoer | Echo the event stream to stdout with prety indenting.
FilterByValue | Filter complete sub hits by the numerical value of some property.
ListQueries | Lists all query sequence names in the report.
ListSubjects | Lists all subject sequence names in the report.
ProcessBlastReport | Driver script that parses a blast report and pumps the result through a configurable chain of filters and handlers.
PropertyEchoer | Print out the value of a single property.
SubHitBuilder | Build SeqSimilaritySearchSubHit instances from the sub hit info.
SubHitFilter | Abstract base class for things that will allow or disallow whole sub hit messages through to the next handler.

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