BioGetSeq (BioJava Applications API)
Keywords: org.biojava.app.BioGetSeq class

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## org.biojava.app
Class BioGetSeq

    java.lang.Object
      org.biojava.app.BioGetSeq

    public class BioGetSeq

extends Object

`BioGetSeq` is a user application for retrieving sequences from flat file databanks which have been indexed according to the Open Bioinformatics Database Access (OBDA) indexing standard. See the BIODATABASE-ACCESS-HOWTO for more information.

Author:
  Keith James, Matthew Pocock
Useage:

  `java org.biojava.app.BioGetSeq` | `-d dataSource [-n namespace] [-f format]`
  `java org.biojava.app.BioGetSeq` | `-h`

Option:

  `-d, --dbname` | Specifies a symbolic data source
  `-f, --format` | The output format {@biojava.default fasta}
  `-h, --help` | Command-line help
  `-n, --namespace` | Specifies the namespace within which to search {@biojava.default ID}

Constructor Summary
`BioGetSeq()`

Method Summary
`static void` | `main(String[] argv)`

Methods inherited from class java.lang.Object
`clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### BioGetSeq

    public BioGetSeq()

Method Detail

### main

    public static void main(String[] argv)
                     throws Exception

  Throws:
    `Exception`

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